Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04794 and MPMX19_04795 are separated by 20 nucleotides MPMX19_04795 and MPMX19_04796 are separated by 4 nucleotides
MPMX19_04794: MPMX19_04794 - hypothetical protein, at 192,571 to 193,977
_04794
MPMX19_04795: MPMX19_04795 - hypothetical protein, at 193,998 to 194,675
_04795
MPMX19_04796: MPMX19_04796 - hypothetical protein, at 194,680 to 196,947
_04796
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.185 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.602 kb on - strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.617 kb on - strand, within MPMX19_04794 at 193.617 kb on - strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.796 kb on + strand, within MPMX19_04794 at 193.797 kb on - strand, within MPMX19_04794 at 193.797 kb on - strand, within MPMX19_04794 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.640 kb on + strand at 194.681 kb on + strand at 194.681 kb on + strand at 194.682 kb on - strand at 194.682 kb on - strand at 194.690 kb on + strand at 194.690 kb on + strand at 194.691 kb on - strand at 194.691 kb on - strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.711 kb on + strand at 194.711 kb on + strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.717 kb on + strand at 194.717 kb on + strand at 194.717 kb on + strand at 194.718 kb on - strand at 194.718 kb on - strand at 194.718 kb on - strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.755 kb on + strand at 194.755 kb on + strand at 194.755 kb on + strand at 194.756 kb on - strand at 194.756 kb on - strand at 194.948 kb on + strand, within MPMX19_04796 at 195.341 kb on + strand, within MPMX19_04796 at 195.341 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.663 kb on - strand, within MPMX19_04796
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 193,019 + MPMX19_04794 0.32 -2.2 193,019 + MPMX19_04794 0.32 +0.2 193,019 + MPMX19_04794 0.32 +0.8 193,019 + MPMX19_04794 0.32 +0.2 193,019 + MPMX19_04794 0.32 +0.0 193,019 + MPMX19_04794 0.32 -0.1 193,020 - MPMX19_04794 0.32 +0.4 193,020 - MPMX19_04794 0.32 -1.6 193,020 - MPMX19_04794 0.32 -0.8 193,142 + MPMX19_04794 0.41 -1.7 193,142 + MPMX19_04794 0.41 -0.6 193,142 + MPMX19_04794 0.41 +0.6 193,142 + MPMX19_04794 0.41 +0.2 193,142 + MPMX19_04794 0.41 +0.7 193,142 + MPMX19_04794 0.41 +1.5 193,143 - MPMX19_04794 0.41 +0.2 193,143 - MPMX19_04794 0.41 -0.4 193,143 - MPMX19_04794 0.41 -0.4 193,143 - MPMX19_04794 0.41 -1.6 193,183 + MPMX19_04794 0.43 +0.1 193,183 + MPMX19_04794 0.43 +0.3 193,183 + MPMX19_04794 0.43 -1.3 193,183 + MPMX19_04794 0.43 +0.3 193,184 - MPMX19_04794 0.44 +0.2 193,184 - MPMX19_04794 0.44 +0.0 193,184 - MPMX19_04794 0.44 -0.0 193,184 - MPMX19_04794 0.44 -0.2 193,184 - MPMX19_04794 0.44 -1.3 193,184 - MPMX19_04794 0.44 +0.9 193,184 - MPMX19_04794 0.44 +0.2 193,184 - MPMX19_04794 0.44 -0.5 193,185 + MPMX19_04794 0.44 +0.0 193,348 + MPMX19_04794 0.55 +0.5 193,348 + MPMX19_04794 0.55 -1.1 193,348 + MPMX19_04794 0.55 +0.0 193,348 + MPMX19_04794 0.55 +0.5 193,349 - MPMX19_04794 0.55 -1.4 193,349 - MPMX19_04794 0.55 +0.7 193,349 - MPMX19_04794 0.55 -1.2 193,427 + MPMX19_04794 0.61 -0.1 193,427 + MPMX19_04794 0.61 -0.2 193,427 + MPMX19_04794 0.61 -0.3 193,427 + MPMX19_04794 0.61 -1.1 193,427 + MPMX19_04794 0.61 -0.3 193,427 + MPMX19_04794 0.61 -0.8 193,427 + MPMX19_04794 0.61 +0.0 193,427 + MPMX19_04794 0.61 -1.5 193,427 + MPMX19_04794 0.61 +0.2 193,427 + MPMX19_04794 0.61 -1.3 193,427 + MPMX19_04794 0.61 -0.1 193,427 + MPMX19_04794 0.61 -0.7 193,428 - MPMX19_04794 0.61 +0.4 193,428 - MPMX19_04794 0.61 -0.3 193,428 - MPMX19_04794 0.61 +0.7 193,428 - MPMX19_04794 0.61 -1.8 193,428 - MPMX19_04794 0.61 +0.3 193,428 - MPMX19_04794 0.61 -1.4 193,428 - MPMX19_04794 0.61 -1.4 193,428 - MPMX19_04794 0.61 -1.7 193,428 - MPMX19_04794 0.61 +0.7 193,428 - MPMX19_04794 0.61 +0.2 193,428 - MPMX19_04794 0.61 -1.1 193,428 - MPMX19_04794 0.61 -1.8 193,428 - MPMX19_04794 0.61 -0.6 193,578 + MPMX19_04794 0.72 +0.5 193,578 + MPMX19_04794 0.72 -0.8 193,578 + MPMX19_04794 0.72 -1.0 193,578 + MPMX19_04794 0.72 +1.3 193,579 - MPMX19_04794 0.72 -0.8 193,579 - MPMX19_04794 0.72 -0.1 193,579 - MPMX19_04794 0.72 +1.4 193,580 + MPMX19_04794 0.72 -1.2 193,580 + MPMX19_04794 0.72 -0.8 193,580 + MPMX19_04794 0.72 -0.6 193,580 + MPMX19_04794 0.72 +0.2 193,580 + MPMX19_04794 0.72 -1.0 193,580 + MPMX19_04794 0.72 -2.1 193,580 + MPMX19_04794 0.72 -0.8 193,580 + MPMX19_04794 0.72 -0.3 193,580 + MPMX19_04794 0.72 -1.8 193,581 - MPMX19_04794 0.72 +0.2 193,581 - MPMX19_04794 0.72 +0.5 193,581 - MPMX19_04794 0.72 +1.2 193,581 - MPMX19_04794 0.72 -0.8 193,581 - MPMX19_04794 0.72 -0.7 193,581 - MPMX19_04794 0.72 -1.0 193,581 - MPMX19_04794 0.72 -1.1 193,602 - MPMX19_04794 0.73 -1.3 193,616 + MPMX19_04794 0.74 -0.3 193,616 + MPMX19_04794 0.74 +0.0 193,616 + MPMX19_04794 0.74 +0.7 193,617 - MPMX19_04794 0.74 +1.0 193,617 - MPMX19_04794 0.74 -0.7 193,794 + MPMX19_04794 0.87 -0.0 193,794 + MPMX19_04794 0.87 +1.5 193,794 + MPMX19_04794 0.87 -1.1 193,794 + MPMX19_04794 0.87 +0.3 193,794 + MPMX19_04794 0.87 +0.3 193,794 + MPMX19_04794 0.87 -0.3 193,794 + MPMX19_04794 0.87 -0.2 193,794 + MPMX19_04794 0.87 +2.0 193,794 + MPMX19_04794 0.87 -3.3 193,794 + MPMX19_04794 0.87 -1.3 193,794 + MPMX19_04794 0.87 -2.3 193,794 + MPMX19_04794 0.87 -1.3 193,794 + MPMX19_04794 0.87 -0.1 193,794 + MPMX19_04794 0.87 +0.3 193,794 + MPMX19_04794 0.87 -0.8 193,795 - MPMX19_04794 0.87 +0.2 193,795 - MPMX19_04794 0.87 +0.2 193,795 - MPMX19_04794 0.87 +0.6 193,795 - MPMX19_04794 0.87 -0.3 193,795 - MPMX19_04794 0.87 +0.2 193,795 - MPMX19_04794 0.87 +0.7 193,795 - MPMX19_04794 0.87 -1.4 193,795 - MPMX19_04794 0.87 +1.3 193,795 - MPMX19_04794 0.87 -0.8 193,795 - MPMX19_04794 0.87 -0.1 193,796 + MPMX19_04794 0.87 -0.0 193,797 - MPMX19_04794 0.87 -0.5 193,797 - MPMX19_04794 0.87 -1.4 194,182 + MPMX19_04795 0.27 +0.7 194,182 + MPMX19_04795 0.27 +0.1 194,182 + MPMX19_04795 0.27 -0.8 194,182 + MPMX19_04795 0.27 +0.7 194,182 + MPMX19_04795 0.27 +0.2 194,182 + MPMX19_04795 0.27 +0.9 194,182 + MPMX19_04795 0.27 +0.6 194,182 + MPMX19_04795 0.27 +1.2 194,182 + MPMX19_04795 0.27 +0.2 194,182 + MPMX19_04795 0.27 -0.1 194,183 - MPMX19_04795 0.27 -0.8 194,183 - MPMX19_04795 0.27 +0.7 194,183 - MPMX19_04795 0.27 -2.4 194,183 - MPMX19_04795 0.27 -0.7 194,183 - MPMX19_04795 0.27 -0.5 194,183 - MPMX19_04795 0.27 +0.1 194,183 - MPMX19_04795 0.27 -0.5 194,183 - MPMX19_04795 0.27 +1.2 194,640 + +0.1 194,681 + +0.0 194,681 + +0.2 194,682 - -0.5 194,682 - -0.2 194,690 + -0.8 194,690 + -0.8 194,691 - -1.2 194,691 - -0.7 194,693 + -0.0 194,693 + +0.9 194,693 + -0.2 194,693 + -0.7 194,693 + -1.1 194,693 + +0.4 194,693 + +1.2 194,693 + +0.1 194,693 + +0.3 194,694 - -0.4 194,694 - -1.6 194,694 - -0.9 194,694 - +0.2 194,694 - -2.4 194,711 + +1.0 194,711 + -1.1 194,712 - +0.2 194,712 - +1.1 194,712 - -0.7 194,712 - -0.8 194,712 - +1.2 194,714 + -0.8 194,714 + +0.0 194,714 + -0.1 194,714 + -0.1 194,714 + +0.2 194,714 + +0.9 194,714 + -0.6 194,714 + -0.3 194,714 + -0.6 194,714 + +0.4 194,714 + +1.2 194,714 + +0.5 194,715 - -0.3 194,715 - -0.6 194,715 - -0.7 194,715 - -0.4 194,715 - -1.4 194,715 - +0.7 194,715 - +0.7 194,715 - +0.8 194,715 - -2.5 194,715 - +0.9 194,715 - +0.3 194,715 - -0.7 194,715 - -1.6 194,717 + -0.5 194,717 + +1.1 194,717 + -0.5 194,718 - -1.4 194,718 - -0.9 194,718 - -0.3 194,738 + +1.5 194,738 + -2.1 194,738 + +1.7 194,738 + -1.8 194,739 - -0.7 194,739 - -0.3 194,739 - -1.3 194,739 - -0.8 194,739 - +0.0 194,739 - +2.2 194,739 - -1.0 194,755 + -1.2 194,755 + +0.2 194,755 + -1.3 194,756 - +2.3 194,756 - +1.7 194,948 + MPMX19_04796 0.12 +0.3 195,341 + MPMX19_04796 0.29 -0.3 195,341 + MPMX19_04796 0.29 +0.4 195,368 + MPMX19_04796 0.30 -2.3 195,368 + MPMX19_04796 0.30 -0.8 195,368 + MPMX19_04796 0.30 +2.2 195,369 - MPMX19_04796 0.30 +0.0 195,369 - MPMX19_04796 0.30 -0.8 195,369 - MPMX19_04796 0.30 -0.7 195,369 - MPMX19_04796 0.30 +0.0 195,663 - MPMX19_04796 0.43 +0.5
Or see this region's nucleotide sequence