Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04731

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04729 and MPMX19_04730 are separated by 140 nucleotidesMPMX19_04730 and MPMX19_04731 are separated by 10 nucleotidesMPMX19_04731 and MPMX19_04732 overlap by 8 nucleotidesMPMX19_04732 and MPMX19_04733 are separated by 100 nucleotides MPMX19_04729: MPMX19_04729 - hypothetical protein, at 120,784 to 121,857 _04729 MPMX19_04730: MPMX19_04730 - Transcription elongation factor GreB, at 121,998 to 122,570 _04730 MPMX19_04731: MPMX19_04731 - hypothetical protein, at 122,581 to 123,630 _04731 MPMX19_04732: MPMX19_04732 - hypothetical protein, at 123,623 to 124,513 _04732 MPMX19_04733: MPMX19_04733 - hypothetical protein, at 124,614 to 125,357 _04733 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1at 121.658 kb on + strand, within MPMX19_04729at 121.664 kb on + strand, within MPMX19_04729at 121.665 kb on - strand, within MPMX19_04729at 121.665 kb on - strand, within MPMX19_04729at 121.694 kb on + strand, within MPMX19_04729at 121.695 kb on - strand, within MPMX19_04729at 121.695 kb on - strand, within MPMX19_04729at 122.061 kb on - strand, within MPMX19_04730at 122.061 kb on - strand, within MPMX19_04730at 122.082 kb on + strand, within MPMX19_04730at 122.082 kb on + strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.121 kb on + strand, within MPMX19_04730at 122.122 kb on - strand, within MPMX19_04730at 122.129 kb on - strand, within MPMX19_04730at 122.129 kb on - strand, within MPMX19_04730at 122.855 kb on + strand, within MPMX19_04731at 122.856 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.314 kb on + strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.726 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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121,658 + MPMX19_04729 0.81 +0.0
121,664 + MPMX19_04729 0.82 -0.6
121,665 - MPMX19_04729 0.82 +0.5
121,665 - MPMX19_04729 0.82 +0.1
121,694 + MPMX19_04729 0.85 +0.2
121,695 - MPMX19_04729 0.85 -1.7
121,695 - MPMX19_04729 0.85 -0.3
122,061 - MPMX19_04730 0.11 -0.4
122,061 - MPMX19_04730 0.11 -1.1
122,082 + MPMX19_04730 0.15 -0.8
122,082 + MPMX19_04730 0.15 +0.7
122,083 - MPMX19_04730 0.15 -0.3
122,083 - MPMX19_04730 0.15 -0.1
122,083 - MPMX19_04730 0.15 -0.8
122,121 + MPMX19_04730 0.21 +0.6
122,122 - MPMX19_04730 0.22 -0.5
122,129 - MPMX19_04730 0.23 -2.0
122,129 - MPMX19_04730 0.23 -1.3
122,855 + MPMX19_04731 0.26 -0.8
122,856 - MPMX19_04731 0.26 +0.6
122,979 - MPMX19_04731 0.38 -1.5
122,979 - MPMX19_04731 0.38 -0.1
123,002 + MPMX19_04731 0.40 -0.9
123,002 + MPMX19_04731 0.40 +1.5
123,003 - MPMX19_04731 0.40 +0.7
123,003 - MPMX19_04731 0.40 +0.7
123,086 + MPMX19_04731 0.48 -0.1
123,086 + MPMX19_04731 0.48 +0.6
123,086 + MPMX19_04731 0.48 -0.3
123,086 + MPMX19_04731 0.48 -1.7
123,087 - MPMX19_04731 0.48 -0.1
123,087 - MPMX19_04731 0.48 +1.7
123,087 - MPMX19_04731 0.48 -0.0
123,087 - MPMX19_04731 0.48 +0.5
123,087 - MPMX19_04731 0.48 +0.6
123,314 + MPMX19_04731 0.70 +0.0
123,315 - MPMX19_04731 0.70 -0.3
123,315 - MPMX19_04731 0.70 +0.7
123,315 - MPMX19_04731 0.70 +1.4
123,726 + MPMX19_04732 0.12 -1.3
123,816 + MPMX19_04732 0.22 +0.7
123,816 + MPMX19_04732 0.22 +0.1
123,816 + MPMX19_04732 0.22 -1.9
123,816 + MPMX19_04732 0.22 -0.1
123,816 + MPMX19_04732 0.22 +0.5
123,816 + MPMX19_04732 0.22 -1.6
123,817 - MPMX19_04732 0.22 -0.3
123,817 - MPMX19_04732 0.22 -1.2
123,817 - MPMX19_04732 0.22 +0.6
124,578 + +0.4
124,578 + +0.1
124,578 + +0.1
124,578 + -0.3
124,578 + -0.4
124,578 + -0.4
124,579 - -0.2
124,579 - -1.4
124,579 - +0.3
124,579 - -1.8
124,579 - -0.2
124,579 - -0.6
124,579 - -0.6

Or see this region's nucleotide sequence