Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04434 and MPMX19_04435 are separated by 1 nucleotides MPMX19_04435 and MPMX19_04436 are separated by 260 nucleotides
MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813
_04434
MPMX19_04435: MPMX19_04435 - Succinate--CoA ligase [ADP-forming] subunit beta, at 799,815 to 801,014
_04435
MPMX19_04436: MPMX19_04436 - Formyl-CoA:oxalate CoA-transferase, at 801,275 to 802,549
_04436
Position (kb)
799
800
801
802 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 798.876 kb on + strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.723 kb on - strand, within MPMX19_04434 at 800.152 kb on + strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.971 kb on + strand at 800.998 kb on + strand at 800.998 kb on + strand at 800.998 kb on + strand at 800.999 kb on - strand at 801.181 kb on + strand at 801.276 kb on + strand at 801.276 kb on + strand at 801.276 kb on + strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.457 kb on - strand, within MPMX19_04436 at 801.457 kb on - strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.505 kb on - strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.868 kb on - strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 798,876 + +0.4 798,877 - -0.1 798,877 - -1.2 798,877 - -1.1 798,965 - +0.5 798,965 - -0.6 798,965 - -0.2 798,965 - +0.3 799,599 + MPMX19_04434 0.75 -0.1 799,599 + MPMX19_04434 0.75 -0.4 799,599 + MPMX19_04434 0.75 -1.2 799,599 + MPMX19_04434 0.75 -1.1 799,599 + MPMX19_04434 0.75 +0.4 799,599 + MPMX19_04434 0.75 +0.4 799,599 + MPMX19_04434 0.75 -1.9 799,599 + MPMX19_04434 0.75 +0.9 799,600 - MPMX19_04434 0.76 +0.1 799,600 - MPMX19_04434 0.76 +0.9 799,600 - MPMX19_04434 0.76 -1.0 799,600 - MPMX19_04434 0.76 -1.2 799,600 - MPMX19_04434 0.76 +0.7 799,600 - MPMX19_04434 0.76 -1.3 799,600 - MPMX19_04434 0.76 -0.8 799,600 - MPMX19_04434 0.76 -0.4 799,600 - MPMX19_04434 0.76 +0.7 799,600 - MPMX19_04434 0.76 -0.4 799,723 - MPMX19_04434 0.90 -1.5 800,152 + MPMX19_04435 0.28 -0.9 800,153 - MPMX19_04435 0.28 +0.4 800,153 - MPMX19_04435 0.28 -0.5 800,153 - MPMX19_04435 0.28 +1.0 800,153 - MPMX19_04435 0.28 +1.1 800,233 + MPMX19_04435 0.35 +0.7 800,233 + MPMX19_04435 0.35 +0.5 800,233 + MPMX19_04435 0.35 -0.1 800,233 + MPMX19_04435 0.35 +0.9 800,233 + MPMX19_04435 0.35 -0.5 800,233 + MPMX19_04435 0.35 +0.1 800,233 + MPMX19_04435 0.35 -0.1 800,233 + MPMX19_04435 0.35 -1.5 800,435 - MPMX19_04435 0.52 -0.7 800,435 - MPMX19_04435 0.52 -0.6 800,435 - MPMX19_04435 0.52 +0.2 800,435 - MPMX19_04435 0.52 -0.4 800,516 - MPMX19_04435 0.58 +0.6 800,516 - MPMX19_04435 0.58 +0.7 800,516 - MPMX19_04435 0.58 -0.6 800,663 - MPMX19_04435 0.71 -0.1 800,663 - MPMX19_04435 0.71 -2.2 800,663 - MPMX19_04435 0.71 +0.7 800,663 - MPMX19_04435 0.71 +0.8 800,663 - MPMX19_04435 0.71 +0.0 800,663 - MPMX19_04435 0.71 +0.2 800,663 - MPMX19_04435 0.71 -0.4 800,663 - MPMX19_04435 0.71 -0.0 800,663 - MPMX19_04435 0.71 -0.3 800,663 - MPMX19_04435 0.71 +0.6 800,663 - MPMX19_04435 0.71 +0.5 800,698 + MPMX19_04435 0.74 +0.4 800,698 + MPMX19_04435 0.74 -0.2 800,698 + MPMX19_04435 0.74 -1.0 800,698 + MPMX19_04435 0.74 +0.9 800,698 + MPMX19_04435 0.74 -0.1 800,698 + MPMX19_04435 0.74 +2.1 800,698 + MPMX19_04435 0.74 +0.3 800,698 + MPMX19_04435 0.74 +0.6 800,698 + MPMX19_04435 0.74 -0.5 800,971 + +0.3 800,998 + -1.4 800,998 + -1.1 800,998 + -0.2 800,999 - -0.3 801,181 + -1.0 801,276 + +0.9 801,276 + -0.0 801,276 + -0.9 801,277 - -0.4 801,277 - +0.2 801,277 - -2.0 801,277 - -2.2 801,456 + MPMX19_04436 0.14 -2.2 801,456 + MPMX19_04436 0.14 -0.3 801,456 + MPMX19_04436 0.14 +0.1 801,456 + MPMX19_04436 0.14 +0.4 801,457 - MPMX19_04436 0.14 -0.9 801,457 - MPMX19_04436 0.14 -0.6 801,504 + MPMX19_04436 0.18 -1.1 801,504 + MPMX19_04436 0.18 +0.0 801,504 + MPMX19_04436 0.18 -1.9 801,504 + MPMX19_04436 0.18 -1.5 801,505 - MPMX19_04436 0.18 -0.8 801,564 + MPMX19_04436 0.23 -0.3 801,564 + MPMX19_04436 0.23 +0.2 801,564 + MPMX19_04436 0.23 +1.1 801,564 + MPMX19_04436 0.23 +0.1 801,564 + MPMX19_04436 0.23 -0.8 801,564 + MPMX19_04436 0.23 -0.3 801,564 + MPMX19_04436 0.23 -0.0 801,564 + MPMX19_04436 0.23 -1.1 801,564 + MPMX19_04436 0.23 +0.2 801,564 + MPMX19_04436 0.23 +0.4 801,564 + MPMX19_04436 0.23 -0.7 801,565 - MPMX19_04436 0.23 -0.6 801,565 - MPMX19_04436 0.23 -1.5 801,565 - MPMX19_04436 0.23 -2.0 801,565 - MPMX19_04436 0.23 -1.1 801,565 - MPMX19_04436 0.23 -0.4 801,565 - MPMX19_04436 0.23 -1.1 801,565 - MPMX19_04436 0.23 -1.1 801,565 - MPMX19_04436 0.23 -0.9 801,565 - MPMX19_04436 0.23 -0.1 801,565 - MPMX19_04436 0.23 -0.7 801,672 + MPMX19_04436 0.31 -0.9 801,672 + MPMX19_04436 0.31 +0.0 801,672 + MPMX19_04436 0.31 +0.0 801,672 + MPMX19_04436 0.31 -0.6 801,673 - MPMX19_04436 0.31 -0.2 801,673 - MPMX19_04436 0.31 -0.8 801,673 - MPMX19_04436 0.31 -0.3 801,751 - MPMX19_04436 0.37 -0.9 801,751 - MPMX19_04436 0.37 +1.1 801,751 - MPMX19_04436 0.37 -0.5 801,751 - MPMX19_04436 0.37 -1.8 801,751 - MPMX19_04436 0.37 -0.8 801,751 - MPMX19_04436 0.37 -0.6 801,751 - MPMX19_04436 0.37 -1.0 801,751 - MPMX19_04436 0.37 +0.2 801,751 - MPMX19_04436 0.37 +1.6 801,751 - MPMX19_04436 0.37 -0.5 801,751 - MPMX19_04436 0.37 +0.1 801,751 - MPMX19_04436 0.37 -0.8 801,751 - MPMX19_04436 0.37 +0.5 801,751 - MPMX19_04436 0.37 -0.7 801,751 - MPMX19_04436 0.37 +0.7 801,751 - MPMX19_04436 0.37 -0.1 801,751 - MPMX19_04436 0.37 -0.3 801,751 - MPMX19_04436 0.37 -0.2 801,751 - MPMX19_04436 0.37 -0.2 801,751 - MPMX19_04436 0.37 -0.7 801,751 - MPMX19_04436 0.37 -0.6 801,757 - MPMX19_04436 0.38 -1.2 801,757 - MPMX19_04436 0.38 -0.2 801,757 - MPMX19_04436 0.38 -0.5 801,757 - MPMX19_04436 0.38 -1.3 801,757 - MPMX19_04436 0.38 -1.4 801,757 - MPMX19_04436 0.38 +0.5 801,757 - MPMX19_04436 0.38 +0.5 801,757 - MPMX19_04436 0.38 -0.9 801,757 - MPMX19_04436 0.38 +0.7 801,757 - MPMX19_04436 0.38 -1.5 801,757 - MPMX19_04436 0.38 -2.0 801,757 - MPMX19_04436 0.38 +0.2 801,757 - MPMX19_04436 0.38 -1.6 801,757 - MPMX19_04436 0.38 +1.1 801,868 - MPMX19_04436 0.47 -0.4 801,876 + MPMX19_04436 0.47 -2.1 801,876 + MPMX19_04436 0.47 -0.8 801,876 + MPMX19_04436 0.47 -1.2 801,876 + MPMX19_04436 0.47 -0.8 801,999 + MPMX19_04436 0.57 -1.2 801,999 + MPMX19_04436 0.57 +0.4 801,999 + MPMX19_04436 0.57 -1.0 801,999 + MPMX19_04436 0.57 -0.1 801,999 + MPMX19_04436 0.57 -0.8 801,999 + MPMX19_04436 0.57 +0.3 801,999 + MPMX19_04436 0.57 -0.1 802,000 - MPMX19_04436 0.57 -0.8 802,000 - MPMX19_04436 0.57 -0.4 802,000 - MPMX19_04436 0.57 +0.3 802,000 - MPMX19_04436 0.57 -0.0 802,000 - MPMX19_04436 0.57 -1.4 802,000 - MPMX19_04436 0.57 -2.3 802,000 - MPMX19_04436 0.57 -0.0
Or see this region's nucleotide sequence