Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04321 and MPMX19_04322 are separated by 73 nucleotides MPMX19_04322 and MPMX19_04323 are separated by 161 nucleotides MPMX19_04323 and MPMX19_04324 overlap by 8 nucleotides MPMX19_04324 and MPMX19_04325 are separated by 11 nucleotides
MPMX19_04321: MPMX19_04321 - Sec-independent protein translocase protein TatB, at 686,621 to 687,157
_04321
MPMX19_04322: MPMX19_04322 - Sec-independent protein translocase protein TatA, at 687,231 to 687,470
_04322
MPMX19_04323: MPMX19_04323 - Segregation and condensation protein B, at 687,632 to 688,249
_04323
MPMX19_04324: MPMX19_04324 - Segregation and condensation protein A, at 688,242 to 689,072
_04324
MPMX19_04325: MPMX19_04325 - hypothetical protein, at 689,084 to 689,761
_04325
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 687.480 kb on - strand at 687.480 kb on - strand at 687.480 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.243 kb on + strand at 688.243 kb on + strand at 688.243 kb on + strand at 688.243 kb on + strand at 688.243 kb on + strand at 688.243 kb on + strand at 688.244 kb on - strand at 688.244 kb on - strand at 688.244 kb on - strand at 688.244 kb on - strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.309 kb on + strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.310 kb on - strand at 688.513 kb on + strand, within MPMX19_04324 at 688.513 kb on + strand, within MPMX19_04324 at 688.513 kb on + strand, within MPMX19_04324 at 688.574 kb on - strand, within MPMX19_04324 at 688.574 kb on - strand, within MPMX19_04324 at 688.574 kb on - strand, within MPMX19_04324 at 688.606 kb on + strand, within MPMX19_04324 at 688.606 kb on + strand, within MPMX19_04324 at 688.606 kb on + strand, within MPMX19_04324 at 688.606 kb on + strand, within MPMX19_04324 at 688.607 kb on - strand, within MPMX19_04324 at 688.607 kb on - strand, within MPMX19_04324 at 688.607 kb on - strand, within MPMX19_04324 at 688.810 kb on + strand, within MPMX19_04324 at 688.810 kb on + strand, within MPMX19_04324 at 688.811 kb on - strand, within MPMX19_04324 at 688.837 kb on + strand, within MPMX19_04324 at 688.837 kb on + strand, within MPMX19_04324 at 688.837 kb on + strand, within MPMX19_04324 at 688.837 kb on + strand, within MPMX19_04324 at 688.838 kb on - strand, within MPMX19_04324 at 688.838 kb on - strand, within MPMX19_04324 at 688.838 kb on - strand, within MPMX19_04324 at 688.838 kb on - strand, within MPMX19_04324 at 688.838 kb on - strand, within MPMX19_04324 at 688.891 kb on + strand, within MPMX19_04324 at 688.891 kb on + strand, within MPMX19_04324 at 688.891 kb on + strand, within MPMX19_04324 at 688.892 kb on - strand, within MPMX19_04324 at 689.082 kb on + strand at 689.082 kb on + strand at 689.082 kb on + strand at 689.082 kb on + strand at 689.082 kb on + strand at 689.082 kb on + strand at 689.082 kb on + strand at 689.083 kb on - strand at 689.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 687,480 - -1.3 687,480 - -0.8 687,480 - -0.4 687,516 - +0.4 687,516 - +0.7 687,516 - +0.2 687,516 - -0.6 687,633 + +0.3 687,633 + +0.1 687,633 + +0.7 687,633 + -0.0 687,633 + -1.7 687,633 + +0.1 687,633 + -1.1 687,633 + +0.0 687,633 + -1.2 687,633 + -0.2 687,633 + +1.0 687,633 + -0.7 687,633 + -0.1 687,633 + -2.0 687,633 + -1.4 687,633 + -0.2 687,633 + -0.4 687,633 + -0.5 687,633 + -0.3 687,634 - -0.1 687,634 - -0.2 687,634 - -2.2 687,634 - -2.0 687,634 - -0.3 687,634 - +0.1 687,634 - -0.2 687,634 - +0.1 687,634 - -1.0 687,634 - -0.5 687,634 - -1.3 687,634 - +0.3 687,634 - -0.2 687,634 - -0.3 687,634 - -0.5 687,634 - +1.5 687,936 + MPMX19_04323 0.49 -0.3 687,936 + MPMX19_04323 0.49 +0.1 687,936 + MPMX19_04323 0.49 +1.1 687,936 + MPMX19_04323 0.49 +0.1 687,936 + MPMX19_04323 0.49 -0.4 687,937 - MPMX19_04323 0.49 -1.0 687,937 - MPMX19_04323 0.49 +0.9 687,937 - MPMX19_04323 0.49 +1.2 688,083 + MPMX19_04323 0.73 +1.3 688,083 + MPMX19_04323 0.73 +1.7 688,083 + MPMX19_04323 0.73 +0.4 688,083 + MPMX19_04323 0.73 -1.7 688,083 + MPMX19_04323 0.73 +1.1 688,083 + MPMX19_04323 0.73 -0.7 688,243 + -1.4 688,243 + +1.0 688,243 + -0.4 688,243 + +1.7 688,243 + -0.3 688,243 + +0.7 688,244 - +2.7 688,244 - -1.0 688,244 - -1.6 688,244 - -1.1 688,309 + -0.4 688,309 + -0.3 688,309 + +0.1 688,309 + -0.9 688,309 + -1.3 688,309 + -0.0 688,309 + +0.4 688,309 + +0.3 688,309 + -2.2 688,310 - -0.0 688,310 - -0.9 688,310 - +0.3 688,310 - +0.7 688,310 - -0.2 688,310 - +0.9 688,310 - -0.1 688,310 - -0.6 688,310 - +0.5 688,513 + MPMX19_04324 0.33 -1.2 688,513 + MPMX19_04324 0.33 +0.7 688,513 + MPMX19_04324 0.33 +0.6 688,574 - MPMX19_04324 0.40 +0.7 688,574 - MPMX19_04324 0.40 -0.0 688,574 - MPMX19_04324 0.40 -0.3 688,606 + MPMX19_04324 0.44 +0.6 688,606 + MPMX19_04324 0.44 +1.3 688,606 + MPMX19_04324 0.44 +0.1 688,606 + MPMX19_04324 0.44 -0.0 688,607 - MPMX19_04324 0.44 -0.9 688,607 - MPMX19_04324 0.44 +0.5 688,607 - MPMX19_04324 0.44 +1.1 688,810 + MPMX19_04324 0.68 +1.7 688,810 + MPMX19_04324 0.68 +0.1 688,811 - MPMX19_04324 0.68 +0.5 688,837 + MPMX19_04324 0.72 +1.6 688,837 + MPMX19_04324 0.72 -1.4 688,837 + MPMX19_04324 0.72 +1.1 688,837 + MPMX19_04324 0.72 -0.6 688,838 - MPMX19_04324 0.72 -0.5 688,838 - MPMX19_04324 0.72 +0.1 688,838 - MPMX19_04324 0.72 -0.7 688,838 - MPMX19_04324 0.72 -1.6 688,838 - MPMX19_04324 0.72 +0.7 688,891 + MPMX19_04324 0.78 +0.1 688,891 + MPMX19_04324 0.78 -1.1 688,891 + MPMX19_04324 0.78 +0.5 688,892 - MPMX19_04324 0.78 +0.9 689,082 + -0.7 689,082 + +0.0 689,082 + +0.1 689,082 + -0.1 689,082 + -0.4 689,082 + +0.7 689,082 + +1.0 689,083 - -0.6 689,083 - -2.2
Or see this region's nucleotide sequence