Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04098 and MPMX19_04099 are separated by 259 nucleotides MPMX19_04099 and MPMX19_04100 are separated by 183 nucleotides MPMX19_04100 and MPMX19_04101 are separated by 27 nucleotides
MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594
_04098
MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285
_04099
MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233
_04100
MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565
_04101
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.395 kb on + strand at 405.428 kb on + strand at 405.428 kb on + strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.641 kb on - strand at 405.723 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.754 kb on + strand at 405.754 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.786 kb on - strand at 405.786 kb on - strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.953 kb on + strand, within MPMX19_04099 at 405.953 kb on + strand, within MPMX19_04099 at 405.954 kb on - strand, within MPMX19_04099 at 405.954 kb on - strand, within MPMX19_04099 at 406.202 kb on + strand, within MPMX19_04099 at 406.202 kb on + strand, within MPMX19_04099 at 406.203 kb on - strand, within MPMX19_04099 at 406.203 kb on - strand, within MPMX19_04099 at 406.217 kb on + strand, within MPMX19_04099 at 406.218 kb on - strand, within MPMX19_04099 at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.370 kb on - strand at 406.370 kb on - strand at 406.370 kb on - strand at 406.370 kb on - strand at 406.687 kb on + strand, within MPMX19_04100 at 406.687 kb on + strand, within MPMX19_04100 at 406.688 kb on - strand, within MPMX19_04100 at 406.688 kb on - strand, within MPMX19_04100 at 406.688 kb on - strand, within MPMX19_04100 at 406.688 kb on - strand, within MPMX19_04100 at 406.688 kb on - strand, within MPMX19_04100
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 405,266 + MPMX19_04098 0.85 +0.9 405,266 + MPMX19_04098 0.85 -0.0 405,266 + MPMX19_04098 0.85 -1.1 405,266 + MPMX19_04098 0.85 +0.5 405,266 + MPMX19_04098 0.85 -1.1 405,266 + MPMX19_04098 0.85 -0.2 405,267 - MPMX19_04098 0.85 +0.1 405,267 - MPMX19_04098 0.85 -0.4 405,267 - MPMX19_04098 0.85 +0.7 405,267 - MPMX19_04098 0.85 +0.5 405,267 - MPMX19_04098 0.85 +0.5 405,267 - MPMX19_04098 0.85 -1.2 405,267 - MPMX19_04098 0.85 +1.6 405,395 + +0.1 405,428 + +0.2 405,428 + -0.2 405,429 - -0.1 405,429 - -1.1 405,429 - +1.1 405,429 - -0.1 405,429 - +0.7 405,641 - -0.1 405,723 + -1.1 405,726 + +0.2 405,726 + +0.1 405,726 + +1.0 405,726 + -0.8 405,726 + -0.3 405,726 + -0.1 405,726 + +0.3 405,726 + -1.5 405,726 + +1.2 405,726 + +0.2 405,726 + -1.1 405,726 + -0.3 405,726 + +1.0 405,726 + -1.2 405,727 - -0.1 405,727 - -0.7 405,727 - +1.7 405,727 - -1.6 405,727 - -0.4 405,727 - -0.4 405,754 + -0.9 405,754 + -0.4 405,785 + +0.4 405,785 + -0.4 405,785 + -1.3 405,785 + +0.9 405,785 + +2.0 405,786 - -0.3 405,786 - -1.0 405,897 + +0.2 405,897 + -1.5 405,897 + -0.7 405,897 + -1.2 405,898 - MPMX19_04099 0.10 +0.9 405,898 - MPMX19_04099 0.10 +0.5 405,898 - MPMX19_04099 0.10 +0.7 405,898 - MPMX19_04099 0.10 -0.9 405,953 + MPMX19_04099 0.23 -1.6 405,953 + MPMX19_04099 0.23 +1.1 405,954 - MPMX19_04099 0.23 -2.6 405,954 - MPMX19_04099 0.23 -0.1 406,202 + MPMX19_04099 0.81 +0.8 406,202 + MPMX19_04099 0.81 -1.2 406,203 - MPMX19_04099 0.81 +0.9 406,203 - MPMX19_04099 0.81 +0.3 406,217 + MPMX19_04099 0.84 -0.1 406,218 - MPMX19_04099 0.84 -0.8 406,369 + +0.1 406,369 + -1.1 406,369 + +0.7 406,369 + -1.2 406,369 + -0.8 406,369 + +0.3 406,370 - +0.5 406,370 - -0.0 406,370 - +0.1 406,370 - -0.6 406,687 + MPMX19_04100 0.28 -0.2 406,687 + MPMX19_04100 0.28 -0.8 406,688 - MPMX19_04100 0.29 -0.3 406,688 - MPMX19_04100 0.29 +0.2 406,688 - MPMX19_04100 0.29 +1.1 406,688 - MPMX19_04100 0.29 -0.1 406,688 - MPMX19_04100 0.29 +0.4
Or see this region's nucleotide sequence