Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03936 and MPMX19_03937 are separated by 160 nucleotides MPMX19_03937 and MPMX19_03938 are separated by 42 nucleotides
MPMX19_03936: MPMX19_03936 - Acetyl-CoA acetyltransferase, at 216,671 to 217,852
_03936
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
MPMX19_03938: MPMX19_03938 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 219,189 to 220,796
_03938
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.867 kb on + strand at 217.867 kb on + strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.924 kb on - strand at 217.959 kb on + strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.988 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.145 kb on - strand at 219.145 kb on - strand at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 217,040 + MPMX19_03936 0.31 -0.7 217,040 + MPMX19_03936 0.31 -0.2 217,040 + MPMX19_03936 0.31 -0.7 217,041 - MPMX19_03936 0.31 -0.6 217,041 - MPMX19_03936 0.31 -0.1 217,041 - MPMX19_03936 0.31 -0.9 217,127 + MPMX19_03936 0.39 +0.4 217,127 + MPMX19_03936 0.39 -0.3 217,127 + MPMX19_03936 0.39 -1.0 217,127 + MPMX19_03936 0.39 -0.0 217,127 + MPMX19_03936 0.39 -0.8 217,127 + MPMX19_03936 0.39 +0.4 217,127 + MPMX19_03936 0.39 -0.5 217,128 - MPMX19_03936 0.39 +0.1 217,128 - MPMX19_03936 0.39 +0.1 217,128 - MPMX19_03936 0.39 +0.3 217,128 - MPMX19_03936 0.39 +0.5 217,178 + MPMX19_03936 0.43 +0.2 217,178 + MPMX19_03936 0.43 -0.5 217,179 - MPMX19_03936 0.43 -0.4 217,179 - MPMX19_03936 0.43 +0.7 217,179 - MPMX19_03936 0.43 -0.4 217,775 + -0.5 217,775 + -0.5 217,775 + -0.6 217,775 + +0.5 217,776 - -0.7 217,776 - -0.6 217,776 - -2.0 217,850 + -0.0 217,850 + -1.5 217,850 + +0.4 217,850 + -0.4 217,850 + +1.0 217,850 + +0.7 217,850 + +0.4 217,850 + +0.8 217,851 - -0.4 217,851 - -1.8 217,851 - -1.2 217,851 - -1.9 217,851 - -0.8 217,851 - -1.0 217,851 - -0.8 217,851 - -0.0 217,867 + +0.7 217,867 + -1.5 217,868 - +0.5 217,868 - -0.6 217,868 - -1.9 217,868 - +0.1 217,868 - +0.3 217,868 - -0.2 217,868 - +0.7 217,924 - +0.6 217,959 + +0.5 217,960 - -0.5 217,960 - +0.5 217,960 - -1.1 217,960 - +1.4 217,960 - -0.2 217,960 - +0.3 217,988 + -0.9 217,990 + -1.2 217,990 + +1.9 217,990 + -0.1 217,990 + -1.0 217,990 + -0.1 217,990 + -1.5 217,990 + -1.1 217,990 + -0.9 217,990 + +0.0 217,990 + -0.0 217,990 + +0.1 218,211 + MPMX19_03937 0.17 -1.2 218,211 + MPMX19_03937 0.17 +0.7 218,211 + MPMX19_03937 0.17 +0.8 218,211 + MPMX19_03937 0.17 -1.3 218,212 - MPMX19_03937 0.18 +0.2 218,212 - MPMX19_03937 0.18 +0.1 218,583 + MPMX19_03937 0.50 -0.0 218,701 - MPMX19_03937 0.61 +2.2 218,701 - MPMX19_03937 0.61 +1.4 218,797 - MPMX19_03937 0.69 +0.1 218,797 - MPMX19_03937 0.69 -0.0 218,797 - MPMX19_03937 0.69 +0.1 218,797 - MPMX19_03937 0.69 -0.0 219,033 + +1.0 219,033 + +0.1 219,033 + +0.3 219,033 + +0.2 219,033 + -0.8 219,033 + -0.9 219,033 + -1.6 219,033 + -1.1 219,033 + -0.4 219,034 - -0.1 219,034 - -1.0 219,034 - -1.4 219,034 - -0.1 219,034 - +0.1 219,063 + -1.3 219,063 + -0.8 219,063 + -0.6 219,063 + +0.7 219,063 + +0.1 219,064 - -0.6 219,064 - -0.2 219,064 - -1.3 219,064 - -0.6 219,090 + -1.2 219,090 + -0.3 219,090 + +0.1 219,090 + -0.1 219,090 + -0.9 219,090 + +0.3 219,090 + -0.4 219,090 + +1.0 219,090 + -0.3 219,091 - +1.7 219,091 - +1.7 219,091 - +0.4 219,091 - +0.1 219,091 - -1.0 219,091 - -2.1 219,091 - -1.0 219,091 - -0.2 219,091 - +0.3 219,144 + -1.2 219,144 + -1.9 219,144 + +0.4 219,144 + +0.6 219,145 - +0.1 219,145 - -0.2 219,432 + MPMX19_03938 0.15 -1.8 219,432 + MPMX19_03938 0.15 +0.1 219,432 + MPMX19_03938 0.15 -1.3 219,432 + MPMX19_03938 0.15 -0.0 219,432 + MPMX19_03938 0.15 +1.1 219,432 + MPMX19_03938 0.15 +1.2 219,433 - MPMX19_03938 0.15 +0.3 219,433 - MPMX19_03938 0.15 +0.9 219,537 + MPMX19_03938 0.22 -1.0 219,537 + MPMX19_03938 0.22 -1.0 219,537 + MPMX19_03938 0.22 -0.4 219,537 + MPMX19_03938 0.22 -0.4 219,537 + MPMX19_03938 0.22 +0.5 219,537 + MPMX19_03938 0.22 -1.3 219,537 + MPMX19_03938 0.22 -0.5 219,537 + MPMX19_03938 0.22 -1.6 219,537 + MPMX19_03938 0.22 -0.4 219,537 + MPMX19_03938 0.22 -1.5 219,537 + MPMX19_03938 0.22 -1.5 219,537 + MPMX19_03938 0.22 +0.2 219,537 + MPMX19_03938 0.22 -0.5 219,537 + MPMX19_03938 0.22 -1.0 219,538 - MPMX19_03938 0.22 -0.3 219,538 - MPMX19_03938 0.22 +0.1 219,538 - MPMX19_03938 0.22 +1.1 219,538 - MPMX19_03938 0.22 +1.1 219,538 - MPMX19_03938 0.22 +0.1 219,538 - MPMX19_03938 0.22 +1.3 219,538 - MPMX19_03938 0.22 +0.2 219,538 - MPMX19_03938 0.22 +0.1 219,538 - MPMX19_03938 0.22 +0.9 219,538 - MPMX19_03938 0.22 +0.7 219,538 - MPMX19_03938 0.22 +3.7 219,538 - MPMX19_03938 0.22 +0.1 219,540 + MPMX19_03938 0.22 -0.9 219,540 + MPMX19_03938 0.22 +0.1 219,609 + MPMX19_03938 0.26 -0.3 219,609 + MPMX19_03938 0.26 -0.7 219,609 + MPMX19_03938 0.26 -0.8 219,609 + MPMX19_03938 0.26 -1.6 219,609 + MPMX19_03938 0.26 +0.2 219,609 + MPMX19_03938 0.26 -0.9 219,609 + MPMX19_03938 0.26 +2.3 219,609 + MPMX19_03938 0.26 +0.5 219,609 + MPMX19_03938 0.26 +0.9 219,609 + MPMX19_03938 0.26 +0.3 219,609 + MPMX19_03938 0.26 -0.5 219,609 + MPMX19_03938 0.26 +0.1 219,610 - MPMX19_03938 0.26 +0.3 219,610 - MPMX19_03938 0.26 +1.1 219,610 - MPMX19_03938 0.26 +0.9 219,610 - MPMX19_03938 0.26 -0.4 219,610 - MPMX19_03938 0.26 +0.3 219,610 - MPMX19_03938 0.26 +2.1 219,610 - MPMX19_03938 0.26 +0.2 219,610 - MPMX19_03938 0.26 -0.6 219,610 - MPMX19_03938 0.26 +0.8 219,610 - MPMX19_03938 0.26 -0.3 219,610 - MPMX19_03938 0.26 -0.1 219,610 - MPMX19_03938 0.26 -0.3 219,610 - MPMX19_03938 0.26 -1.3 219,610 - MPMX19_03938 0.26 -1.0 219,610 - MPMX19_03938 0.26 +0.4 219,610 - MPMX19_03938 0.26 -1.3 219,690 + MPMX19_03938 0.31 -0.6 219,690 + MPMX19_03938 0.31 +0.2 219,690 + MPMX19_03938 0.31 -0.6 219,690 + MPMX19_03938 0.31 +0.5 219,690 + MPMX19_03938 0.31 +0.5 219,691 - MPMX19_03938 0.31 -0.2 219,691 - MPMX19_03938 0.31 +0.1 219,691 - MPMX19_03938 0.31 +0.5 219,691 - MPMX19_03938 0.31 -0.5 219,768 + MPMX19_03938 0.36 -0.0 219,768 + MPMX19_03938 0.36 +0.3 219,768 + MPMX19_03938 0.36 -0.4 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 +0.7 219,768 + MPMX19_03938 0.36 -0.7 219,768 + MPMX19_03938 0.36 +1.0 219,768 + MPMX19_03938 0.36 +0.0 219,768 + MPMX19_03938 0.36 -1.5 219,768 + MPMX19_03938 0.36 -0.9 219,768 + MPMX19_03938 0.36 +0.6 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 +0.6 219,768 + MPMX19_03938 0.36 +0.6 219,769 - MPMX19_03938 0.36 -1.3 219,769 - MPMX19_03938 0.36 +0.9 219,769 - MPMX19_03938 0.36 -0.1 219,769 - MPMX19_03938 0.36 +0.4 219,769 - MPMX19_03938 0.36 -0.3 219,769 - MPMX19_03938 0.36 -2.1 219,931 - MPMX19_03938 0.46 +1.0 219,931 - MPMX19_03938 0.46 -1.0 219,931 - MPMX19_03938 0.46 +0.0 220,056 + MPMX19_03938 0.54 +1.3 220,056 + MPMX19_03938 0.54 -1.1 220,056 + MPMX19_03938 0.54 +1.0 220,056 + MPMX19_03938 0.54 -0.2 220,056 + MPMX19_03938 0.54 +0.8 220,056 + MPMX19_03938 0.54 -0.2 220,056 + MPMX19_03938 0.54 +0.7 220,056 + MPMX19_03938 0.54 +0.6 220,057 - MPMX19_03938 0.54 -1.3 220,057 - MPMX19_03938 0.54 +1.7 220,057 - MPMX19_03938 0.54 -1.5 220,057 - MPMX19_03938 0.54 -1.6 220,057 - MPMX19_03938 0.54 +0.2 220,057 - MPMX19_03938 0.54 -0.3 220,057 - MPMX19_03938 0.54 +0.1 220,057 - MPMX19_03938 0.54 -0.3
Or see this region's nucleotide sequence