Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03857

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03856 and MPMX19_03857 are separated by 143 nucleotidesMPMX19_03857 and MPMX19_03858 are separated by 65 nucleotides MPMX19_03856: MPMX19_03856 - Multidrug resistance protein MdtA, at 102,328 to 103,449 _03856 MPMX19_03857: MPMX19_03857 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 103,593 to 104,408 _03857 MPMX19_03858: MPMX19_03858 - Multidrug resistance protein MdtK, at 104,474 to 105,898 _03858 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.653 kb on + strand, within MPMX19_03856at 102.653 kb on + strand, within MPMX19_03856at 102.653 kb on + strand, within MPMX19_03856at 102.653 kb on + strand, within MPMX19_03856at 102.653 kb on + strand, within MPMX19_03856at 102.654 kb on - strand, within MPMX19_03856at 102.654 kb on - strand, within MPMX19_03856at 102.654 kb on - strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.665 kb on + strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.666 kb on - strand, within MPMX19_03856at 102.719 kb on + strand, within MPMX19_03856at 102.719 kb on + strand, within MPMX19_03856at 102.740 kb on + strand, within MPMX19_03856at 102.740 kb on + strand, within MPMX19_03856at 102.740 kb on + strand, within MPMX19_03856at 102.741 kb on - strand, within MPMX19_03856at 102.741 kb on - strand, within MPMX19_03856at 102.741 kb on - strand, within MPMX19_03856at 102.741 kb on - strand, within MPMX19_03856at 102.920 kb on + strand, within MPMX19_03856at 102.920 kb on + strand, within MPMX19_03856at 102.920 kb on + strand, within MPMX19_03856at 102.920 kb on + strand, within MPMX19_03856at 102.920 kb on + strand, within MPMX19_03856at 102.921 kb on - strand, within MPMX19_03856at 102.921 kb on - strand, within MPMX19_03856at 102.921 kb on - strand, within MPMX19_03856at 103.052 kb on + strand, within MPMX19_03856at 103.053 kb on - strand, within MPMX19_03856at 103.470 kb on + strandat 104.016 kb on + strand, within MPMX19_03857at 104.016 kb on + strand, within MPMX19_03857at 104.016 kb on + strand, within MPMX19_03857at 104.016 kb on + strand, within MPMX19_03857at 104.016 kb on + strand, within MPMX19_03857at 104.017 kb on - strand, within MPMX19_03857at 104.017 kb on - strand, within MPMX19_03857at 104.017 kb on - strand, within MPMX19_03857at 104.017 kb on - strand, within MPMX19_03857at 104.017 kb on - strand, within MPMX19_03857at 104.028 kb on + strand, within MPMX19_03857at 104.028 kb on + strand, within MPMX19_03857at 104.028 kb on + strand, within MPMX19_03857at 104.029 kb on - strand, within MPMX19_03857at 104.029 kb on - strand, within MPMX19_03857at 104.029 kb on - strand, within MPMX19_03857at 104.029 kb on - strand, within MPMX19_03857at 104.029 kb on - strand, within MPMX19_03857at 104.058 kb on + strand, within MPMX19_03857at 104.059 kb on - strand, within MPMX19_03857at 104.059 kb on - strand, within MPMX19_03857at 104.059 kb on - strand, within MPMX19_03857at 104.059 kb on - strand, within MPMX19_03857at 104.124 kb on + strand, within MPMX19_03857at 104.125 kb on - strand, within MPMX19_03857at 104.125 kb on - strand, within MPMX19_03857at 104.126 kb on + strand, within MPMX19_03857at 104.126 kb on + strand, within MPMX19_03857at 104.126 kb on + strand, within MPMX19_03857at 104.127 kb on - strand, within MPMX19_03857at 104.127 kb on - strand, within MPMX19_03857at 104.181 kb on + strand, within MPMX19_03857at 104.181 kb on + strand, within MPMX19_03857at 104.181 kb on + strand, within MPMX19_03857at 104.182 kb on - strand, within MPMX19_03857at 104.182 kb on - strand, within MPMX19_03857at 104.182 kb on - strand, within MPMX19_03857at 104.522 kb on + strandat 104.522 kb on + strandat 104.523 kb on - strandat 104.523 kb on - strandat 104.523 kb on - strandat 104.524 kb on + strandat 104.524 kb on + strandat 104.524 kb on + strandat 104.524 kb on + strandat 104.525 kb on - strandat 104.525 kb on - strandat 104.525 kb on - strandat 104.525 kb on - strandat 104.525 kb on - strandat 104.636 kb on + strand, within MPMX19_03858at 104.636 kb on + strand, within MPMX19_03858at 104.636 kb on + strand, within MPMX19_03858at 104.636 kb on + strand, within MPMX19_03858at 104.636 kb on + strand, within MPMX19_03858at 104.637 kb on - strand, within MPMX19_03858at 104.637 kb on - strand, within MPMX19_03858at 104.927 kb on + strand, within MPMX19_03858at 104.927 kb on + strand, within MPMX19_03858at 104.927 kb on + strand, within MPMX19_03858at 104.928 kb on - strand, within MPMX19_03858at 104.928 kb on - strand, within MPMX19_03858at 104.928 kb on - strand, within MPMX19_03858at 104.928 kb on - strand, within MPMX19_03858at 104.928 kb on - strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.258 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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102,653 + MPMX19_03856 0.29 +0.0
102,653 + MPMX19_03856 0.29 +0.3
102,653 + MPMX19_03856 0.29 +1.0
102,653 + MPMX19_03856 0.29 -1.7
102,653 + MPMX19_03856 0.29 +0.4
102,654 - MPMX19_03856 0.29 -0.5
102,654 - MPMX19_03856 0.29 -1.3
102,654 - MPMX19_03856 0.29 -0.3
102,665 + MPMX19_03856 0.30 -0.6
102,665 + MPMX19_03856 0.30 -1.1
102,665 + MPMX19_03856 0.30 +0.1
102,665 + MPMX19_03856 0.30 -2.5
102,665 + MPMX19_03856 0.30 +0.3
102,665 + MPMX19_03856 0.30 -1.7
102,665 + MPMX19_03856 0.30 +0.1
102,665 + MPMX19_03856 0.30 +0.0
102,665 + MPMX19_03856 0.30 -0.1
102,665 + MPMX19_03856 0.30 -2.5
102,665 + MPMX19_03856 0.30 -2.2
102,666 - MPMX19_03856 0.30 -2.0
102,666 - MPMX19_03856 0.30 -1.7
102,666 - MPMX19_03856 0.30 -0.2
102,666 - MPMX19_03856 0.30 -1.1
102,666 - MPMX19_03856 0.30 -0.5
102,666 - MPMX19_03856 0.30 -0.2
102,666 - MPMX19_03856 0.30 -2.0
102,666 - MPMX19_03856 0.30 -0.2
102,666 - MPMX19_03856 0.30 -1.3
102,719 + MPMX19_03856 0.35 -1.1
102,719 + MPMX19_03856 0.35 +0.3
102,740 + MPMX19_03856 0.37 -2.0
102,740 + MPMX19_03856 0.37 -0.7
102,740 + MPMX19_03856 0.37 +0.2
102,741 - MPMX19_03856 0.37 +0.9
102,741 - MPMX19_03856 0.37 -1.6
102,741 - MPMX19_03856 0.37 -1.5
102,741 - MPMX19_03856 0.37 -0.3
102,920 + MPMX19_03856 0.53 -1.5
102,920 + MPMX19_03856 0.53 -1.9
102,920 + MPMX19_03856 0.53 -0.3
102,920 + MPMX19_03856 0.53 -0.2
102,920 + MPMX19_03856 0.53 +0.2
102,921 - MPMX19_03856 0.53 -1.5
102,921 - MPMX19_03856 0.53 -0.2
102,921 - MPMX19_03856 0.53 +0.6
103,052 + MPMX19_03856 0.65 -0.3
103,053 - MPMX19_03856 0.65 -0.4
103,470 + +0.7
104,016 + MPMX19_03857 0.52 -1.0
104,016 + MPMX19_03857 0.52 -3.1
104,016 + MPMX19_03857 0.52 +1.4
104,016 + MPMX19_03857 0.52 -0.7
104,016 + MPMX19_03857 0.52 -0.6
104,017 - MPMX19_03857 0.52 -0.6
104,017 - MPMX19_03857 0.52 +1.0
104,017 - MPMX19_03857 0.52 -1.3
104,017 - MPMX19_03857 0.52 -1.5
104,017 - MPMX19_03857 0.52 -0.3
104,028 + MPMX19_03857 0.53 -1.1
104,028 + MPMX19_03857 0.53 -0.8
104,028 + MPMX19_03857 0.53 -2.5
104,029 - MPMX19_03857 0.53 +0.1
104,029 - MPMX19_03857 0.53 -1.0
104,029 - MPMX19_03857 0.53 -0.2
104,029 - MPMX19_03857 0.53 +0.3
104,029 - MPMX19_03857 0.53 -0.4
104,058 + MPMX19_03857 0.57 +0.6
104,059 - MPMX19_03857 0.57 -0.2
104,059 - MPMX19_03857 0.57 -1.4
104,059 - MPMX19_03857 0.57 +0.5
104,059 - MPMX19_03857 0.57 +0.1
104,124 + MPMX19_03857 0.65 -0.6
104,125 - MPMX19_03857 0.65 -0.3
104,125 - MPMX19_03857 0.65 +0.1
104,126 + MPMX19_03857 0.65 -0.1
104,126 + MPMX19_03857 0.65 +0.1
104,126 + MPMX19_03857 0.65 -1.2
104,127 - MPMX19_03857 0.65 -0.5
104,127 - MPMX19_03857 0.65 -0.7
104,181 + MPMX19_03857 0.72 -0.7
104,181 + MPMX19_03857 0.72 -0.1
104,181 + MPMX19_03857 0.72 +0.1
104,182 - MPMX19_03857 0.72 -0.9
104,182 - MPMX19_03857 0.72 -2.0
104,182 - MPMX19_03857 0.72 -0.1
104,522 + -1.2
104,522 + +0.7
104,523 - +0.4
104,523 - +1.7
104,523 - -1.6
104,524 + -0.1
104,524 + -1.3
104,524 + -1.0
104,524 + +0.7
104,525 - +0.2
104,525 - -0.2
104,525 - -0.9
104,525 - -1.9
104,525 - -0.5
104,636 + MPMX19_03858 0.11 -0.9
104,636 + MPMX19_03858 0.11 -0.7
104,636 + MPMX19_03858 0.11 +0.4
104,636 + MPMX19_03858 0.11 +0.1
104,636 + MPMX19_03858 0.11 +0.7
104,637 - MPMX19_03858 0.11 +1.0
104,637 - MPMX19_03858 0.11 +0.9
104,927 + MPMX19_03858 0.32 -0.6
104,927 + MPMX19_03858 0.32 -0.3
104,927 + MPMX19_03858 0.32 -0.2
104,928 - MPMX19_03858 0.32 -0.0
104,928 - MPMX19_03858 0.32 -0.0
104,928 - MPMX19_03858 0.32 +1.1
104,928 - MPMX19_03858 0.32 -0.8
104,928 - MPMX19_03858 0.32 -0.6
105,137 + MPMX19_03858 0.47 +0.2
105,137 + MPMX19_03858 0.47 +0.6
105,137 + MPMX19_03858 0.47 +1.1
105,137 + MPMX19_03858 0.47 -0.4
105,137 + MPMX19_03858 0.47 -0.3
105,138 - MPMX19_03858 0.47 -1.0
105,138 - MPMX19_03858 0.47 -0.0
105,138 - MPMX19_03858 0.47 -3.2
105,138 - MPMX19_03858 0.47 -1.7
105,138 - MPMX19_03858 0.47 +1.7
105,138 - MPMX19_03858 0.47 -1.2
105,140 + MPMX19_03858 0.47 -0.3
105,140 + MPMX19_03858 0.47 -0.6
105,140 + MPMX19_03858 0.47 -0.5
105,140 + MPMX19_03858 0.47 +1.1
105,140 + MPMX19_03858 0.47 -1.0
105,140 + MPMX19_03858 0.47 -2.3
105,140 + MPMX19_03858 0.47 +2.0
105,140 + MPMX19_03858 0.47 -0.1
105,141 - MPMX19_03858 0.47 -0.5
105,141 - MPMX19_03858 0.47 -0.7
105,141 - MPMX19_03858 0.47 -0.6
105,141 - MPMX19_03858 0.47 -1.2
105,141 - MPMX19_03858 0.47 -0.3
105,141 - MPMX19_03858 0.47 +0.0
105,141 - MPMX19_03858 0.47 -0.5
105,171 - MPMX19_03858 0.49 -0.4
105,171 - MPMX19_03858 0.49 -1.3
105,171 - MPMX19_03858 0.49 +0.1
105,171 - MPMX19_03858 0.49 -0.9
105,258 + MPMX19_03858 0.55 +0.3
105,371 + MPMX19_03858 0.63 -0.2
105,371 + MPMX19_03858 0.63 +1.3
105,371 + MPMX19_03858 0.63 +0.5
105,371 + MPMX19_03858 0.63 -0.9
105,371 + MPMX19_03858 0.63 -1.2
105,372 - MPMX19_03858 0.63 +0.1
105,372 - MPMX19_03858 0.63 -1.6
105,372 - MPMX19_03858 0.63 -0.3
105,372 - MPMX19_03858 0.63 -0.4
105,372 - MPMX19_03858 0.63 +0.0
105,372 - MPMX19_03858 0.63 +0.1

Or see this region's nucleotide sequence