Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03768 and MPMX19_03769 are separated by 284 nucleotides MPMX19_03769 and MPMX19_03770 are separated by 351 nucleotides
MPMX19_03768: MPMX19_03768 - hypothetical protein, at 11,321 to 12,223
_03768
MPMX19_03769: MPMX19_03769 - hypothetical protein, at 12,508 to 13,458
_03769
MPMX19_03770: MPMX19_03770 - hypothetical protein, at 13,810 to 13,980
_03770
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.601 kb on - strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.786 kb on + strand, within MPMX19_03768 at 11.810 kb on - strand, within MPMX19_03768 at 11.870 kb on + strand, within MPMX19_03768 at 12.118 kb on + strand, within MPMX19_03768 at 12.176 kb on + strand at 12.297 kb on - strand at 12.433 kb on + strand at 12.481 kb on - strand at 12.484 kb on + strand at 12.484 kb on + strand at 12.503 kb on - strand at 12.547 kb on + strand at 12.590 kb on + strand at 12.754 kb on - strand, within MPMX19_03769 at 12.754 kb on - strand, within MPMX19_03769 at 12.885 kb on + strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.962 kb on - strand, within MPMX19_03769 at 13.024 kb on - strand, within MPMX19_03769 at 13.030 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.183 kb on + strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.262 kb on + strand, within MPMX19_03769 at 13.262 kb on + strand, within MPMX19_03769 at 13.263 kb on - strand, within MPMX19_03769 at 13.307 kb on + strand, within MPMX19_03769 at 13.307 kb on + strand, within MPMX19_03769 at 13.308 kb on - strand, within MPMX19_03769 at 13.334 kb on + strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.436 kb on + strand at 13.436 kb on + strand at 13.452 kb on + strand at 13.452 kb on + strand at 13.523 kb on + strand at 13.526 kb on + strand at 13.582 kb on + strand at 13.583 kb on - strand at 13.665 kb on + strand at 13.665 kb on + strand at 13.665 kb on + strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 14.042 kb on + strand at 14.043 kb on - strand at 14.043 kb on - strand at 14.043 kb on - strand at 14.126 kb on + strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.192 kb on - strand at 14.226 kb on + strand at 14.227 kb on - strand at 14.235 kb on + strand at 14.276 kb on - strand at 14.357 kb on + strand at 14.358 kb on - strand at 14.403 kb on + strand at 14.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 11,601 - MPMX19_03768 0.31 +0.2 11,700 + MPMX19_03768 0.42 +0.6 11,700 + MPMX19_03768 0.42 -0.0 11,786 + MPMX19_03768 0.51 +1.1 11,810 - MPMX19_03768 0.54 +0.1 11,870 + MPMX19_03768 0.61 -0.2 12,118 + MPMX19_03768 0.88 +0.2 12,176 + -2.3 12,297 - -2.4 12,433 + +0.0 12,481 - -1.5 12,484 + +1.7 12,484 + -0.6 12,503 - +1.3 12,547 + -0.3 12,590 + +0.3 12,754 - MPMX19_03769 0.26 -1.5 12,754 - MPMX19_03769 0.26 +1.0 12,885 + MPMX19_03769 0.40 -0.5 12,886 - MPMX19_03769 0.40 -1.3 12,886 - MPMX19_03769 0.40 -0.1 12,886 - MPMX19_03769 0.40 +0.4 12,961 + MPMX19_03769 0.48 -1.1 12,961 + MPMX19_03769 0.48 -0.8 12,962 - MPMX19_03769 0.48 +1.0 13,024 - MPMX19_03769 0.54 +2.7 13,030 + MPMX19_03769 0.55 +1.7 13,106 + MPMX19_03769 0.63 -0.3 13,106 + MPMX19_03769 0.63 -1.2 13,106 + MPMX19_03769 0.63 +0.9 13,106 + MPMX19_03769 0.63 +0.5 13,106 + MPMX19_03769 0.63 +0.3 13,136 + MPMX19_03769 0.66 -1.3 13,136 + MPMX19_03769 0.66 +0.3 13,136 + MPMX19_03769 0.66 +0.7 13,136 + MPMX19_03769 0.66 +1.3 13,137 - MPMX19_03769 0.66 -2.0 13,137 - MPMX19_03769 0.66 +0.7 13,137 - MPMX19_03769 0.66 +1.7 13,137 - MPMX19_03769 0.66 +0.7 13,183 + MPMX19_03769 0.71 -0.4 13,184 - MPMX19_03769 0.71 +0.5 13,184 - MPMX19_03769 0.71 +1.2 13,184 - MPMX19_03769 0.71 -0.3 13,262 + MPMX19_03769 0.79 +0.4 13,262 + MPMX19_03769 0.79 +0.4 13,263 - MPMX19_03769 0.79 +0.1 13,307 + MPMX19_03769 0.84 -0.4 13,307 + MPMX19_03769 0.84 +0.5 13,308 - MPMX19_03769 0.84 -0.2 13,334 + MPMX19_03769 0.87 -0.4 13,335 - MPMX19_03769 0.87 +0.9 13,335 - MPMX19_03769 0.87 +0.1 13,335 - MPMX19_03769 0.87 +0.1 13,335 - MPMX19_03769 0.87 +0.1 13,335 - MPMX19_03769 0.87 -1.1 13,436 + -0.5 13,436 + -1.0 13,452 + -0.1 13,452 + -1.2 13,523 + +0.9 13,526 + +0.0 13,582 + -1.7 13,583 - -0.7 13,665 + +0.3 13,665 + -0.0 13,665 + -0.3 13,666 - -0.5 13,666 - -1.3 13,666 - -0.3 13,666 - +0.3 13,666 - -0.4 13,666 - +0.5 13,666 - -0.3 13,666 - +1.0 13,666 - -1.5 14,042 + +0.7 14,043 - -0.5 14,043 - -1.2 14,043 - -0.4 14,126 + -0.5 14,127 - -0.7 14,127 - -0.5 14,127 - -1.1 14,127 - -0.7 14,127 - +0.0 14,127 - -0.7 14,127 - -0.3 14,192 - -1.0 14,226 + -1.4 14,227 - -2.5 14,235 + +0.1 14,276 - -1.0 14,357 + +1.0 14,358 - +0.7 14,403 + +0.7 14,458 + -0.3
Or see this region's nucleotide sequence