Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03573

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03572 and MPMX19_03573 are separated by 25 nucleotidesMPMX19_03573 and MPMX19_03574 are separated by 103 nucleotides MPMX19_03572: MPMX19_03572 - Long-chain-fatty-acid--CoA ligase, at 992,895 to 994,412 _03572 MPMX19_03573: MPMX19_03573 - hypothetical protein, at 994,438 to 995,295 _03573 MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286 _03574 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.589 kb on + strand, within MPMX19_03572at 993.589 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.937 kb on + strand, within MPMX19_03572at 993.937 kb on + strand, within MPMX19_03572at 993.937 kb on + strand, within MPMX19_03572at 993.937 kb on + strand, within MPMX19_03572at 993.938 kb on - strand, within MPMX19_03572at 993.938 kb on - strand, within MPMX19_03572at 993.938 kb on - strand, within MPMX19_03572at 993.938 kb on - strand, within MPMX19_03572at 994.222 kb on + strand, within MPMX19_03572at 994.222 kb on + strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.223 kb on - strand, within MPMX19_03572at 994.439 kb on + strandat 994.565 kb on + strand, within MPMX19_03573at 994.565 kb on + strand, within MPMX19_03573at 994.566 kb on - strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.853 kb on + strand, within MPMX19_03573at 994.854 kb on - strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.989 kb on - strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.316 kb on + strandat 995.317 kb on - strandat 995.318 kb on + strandat 995.318 kb on + strandat 995.321 kb on + strandat 995.322 kb on - strandat 995.349 kb on - strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.951 kb on - strand, within MPMX19_03574at 996.008 kb on + strand, within MPMX19_03574

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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993,514 + MPMX19_03572 0.41 +0.1
993,514 + MPMX19_03572 0.41 -1.1
993,514 + MPMX19_03572 0.41 -1.7
993,514 + MPMX19_03572 0.41 -1.2
993,514 + MPMX19_03572 0.41 +0.1
993,515 - MPMX19_03572 0.41 -2.4
993,515 - MPMX19_03572 0.41 -0.6
993,515 - MPMX19_03572 0.41 +0.4
993,515 - MPMX19_03572 0.41 -2.8
993,515 - MPMX19_03572 0.41 -1.7
993,571 + MPMX19_03572 0.45 +0.6
993,571 + MPMX19_03572 0.45 +0.1
993,571 + MPMX19_03572 0.45 +0.4
993,571 + MPMX19_03572 0.45 -2.6
993,571 + MPMX19_03572 0.45 -0.6
993,571 + MPMX19_03572 0.45 +0.2
993,571 + MPMX19_03572 0.45 -0.4
993,571 + MPMX19_03572 0.45 +0.5
993,571 + MPMX19_03572 0.45 -0.5
993,571 + MPMX19_03572 0.45 +1.3
993,571 + MPMX19_03572 0.45 +0.2
993,571 + MPMX19_03572 0.45 -0.3
993,571 + MPMX19_03572 0.45 -1.1
993,571 + MPMX19_03572 0.45 +0.1
993,571 + MPMX19_03572 0.45 -0.4
993,571 + MPMX19_03572 0.45 -1.3
993,571 + MPMX19_03572 0.45 -0.0
993,571 + MPMX19_03572 0.45 -0.9
993,571 + MPMX19_03572 0.45 -0.1
993,571 + MPMX19_03572 0.45 -1.4
993,571 + MPMX19_03572 0.45 +0.8
993,571 + MPMX19_03572 0.45 +0.9
993,571 + MPMX19_03572 0.45 +1.7
993,571 + MPMX19_03572 0.45 -0.3
993,571 + MPMX19_03572 0.45 -1.9
993,571 + MPMX19_03572 0.45 +1.7
993,571 + MPMX19_03572 0.45 -1.2
993,572 - MPMX19_03572 0.45 -2.4
993,572 - MPMX19_03572 0.45 -0.2
993,572 - MPMX19_03572 0.45 -0.2
993,572 - MPMX19_03572 0.45 -0.7
993,572 - MPMX19_03572 0.45 -0.8
993,572 - MPMX19_03572 0.45 -1.1
993,572 - MPMX19_03572 0.45 -0.5
993,572 - MPMX19_03572 0.45 -1.6
993,572 - MPMX19_03572 0.45 +0.1
993,572 - MPMX19_03572 0.45 -0.9
993,572 - MPMX19_03572 0.45 -0.9
993,572 - MPMX19_03572 0.45 -1.4
993,572 - MPMX19_03572 0.45 -1.5
993,572 - MPMX19_03572 0.45 +0.5
993,572 - MPMX19_03572 0.45 -0.5
993,572 - MPMX19_03572 0.45 -1.2
993,572 - MPMX19_03572 0.45 -1.0
993,572 - MPMX19_03572 0.45 +0.7
993,572 - MPMX19_03572 0.45 -0.4
993,572 - MPMX19_03572 0.45 +0.8
993,589 + MPMX19_03572 0.46 -0.0
993,589 + MPMX19_03572 0.46 -0.6
993,772 + MPMX19_03572 0.58 -0.2
993,772 + MPMX19_03572 0.58 -2.0
993,772 + MPMX19_03572 0.58 -1.6
993,772 + MPMX19_03572 0.58 +0.9
993,772 + MPMX19_03572 0.58 -0.1
993,772 + MPMX19_03572 0.58 +0.7
993,772 + MPMX19_03572 0.58 -0.9
993,772 + MPMX19_03572 0.58 -0.0
993,772 + MPMX19_03572 0.58 -0.2
993,772 + MPMX19_03572 0.58 -0.4
993,772 + MPMX19_03572 0.58 -0.9
993,772 + MPMX19_03572 0.58 -1.1
993,773 - MPMX19_03572 0.58 -0.6
993,773 - MPMX19_03572 0.58 +0.3
993,773 - MPMX19_03572 0.58 +1.0
993,773 - MPMX19_03572 0.58 -0.1
993,773 - MPMX19_03572 0.58 -0.5
993,773 - MPMX19_03572 0.58 +1.0
993,773 - MPMX19_03572 0.58 -0.1
993,773 - MPMX19_03572 0.58 -1.1
993,782 + MPMX19_03572 0.58 +1.1
993,782 + MPMX19_03572 0.58 +0.5
993,782 + MPMX19_03572 0.58 +1.0
993,782 + MPMX19_03572 0.58 -1.5
993,782 + MPMX19_03572 0.58 -0.9
993,782 + MPMX19_03572 0.58 -0.6
993,783 - MPMX19_03572 0.58 +0.1
993,783 - MPMX19_03572 0.58 -0.5
993,783 - MPMX19_03572 0.58 -0.6
993,783 - MPMX19_03572 0.58 -0.1
993,783 - MPMX19_03572 0.58 -1.4
993,783 - MPMX19_03572 0.58 +1.5
993,783 - MPMX19_03572 0.58 -0.3
993,783 - MPMX19_03572 0.58 +0.1
993,784 + MPMX19_03572 0.59 +2.7
993,784 + MPMX19_03572 0.59 -0.6
993,784 + MPMX19_03572 0.59 -0.3
993,784 + MPMX19_03572 0.59 -0.6
993,784 + MPMX19_03572 0.59 -1.3
993,784 + MPMX19_03572 0.59 +1.7
993,784 + MPMX19_03572 0.59 -0.5
993,784 + MPMX19_03572 0.59 +1.7
993,784 + MPMX19_03572 0.59 +0.1
993,784 + MPMX19_03572 0.59 +0.6
993,784 + MPMX19_03572 0.59 +0.6
993,784 + MPMX19_03572 0.59 -0.9
993,784 + MPMX19_03572 0.59 +0.5
993,784 + MPMX19_03572 0.59 -0.1
993,784 + MPMX19_03572 0.59 -0.3
993,784 + MPMX19_03572 0.59 -2.1
993,784 + MPMX19_03572 0.59 +0.0
993,784 + MPMX19_03572 0.59 -0.6
993,784 + MPMX19_03572 0.59 -0.1
993,784 + MPMX19_03572 0.59 -0.3
993,784 + MPMX19_03572 0.59 -0.1
993,784 + MPMX19_03572 0.59 -0.5
993,785 - MPMX19_03572 0.59 -0.4
993,785 - MPMX19_03572 0.59 -0.3
993,785 - MPMX19_03572 0.59 -0.5
993,785 - MPMX19_03572 0.59 -0.2
993,785 - MPMX19_03572 0.59 -0.5
993,785 - MPMX19_03572 0.59 -0.7
993,785 - MPMX19_03572 0.59 +0.4
993,785 - MPMX19_03572 0.59 -0.9
993,785 - MPMX19_03572 0.59 -1.2
993,785 - MPMX19_03572 0.59 -0.3
993,785 - MPMX19_03572 0.59 +0.5
993,785 - MPMX19_03572 0.59 -0.7
993,785 - MPMX19_03572 0.59 -0.9
993,785 - MPMX19_03572 0.59 -0.9
993,785 - MPMX19_03572 0.59 -1.7
993,785 - MPMX19_03572 0.59 -1.9
993,785 - MPMX19_03572 0.59 +1.4
993,785 - MPMX19_03572 0.59 -0.9
993,937 + MPMX19_03572 0.69 -2.5
993,937 + MPMX19_03572 0.69 +0.2
993,937 + MPMX19_03572 0.69 -0.4
993,937 + MPMX19_03572 0.69 +0.4
993,938 - MPMX19_03572 0.69 +0.4
993,938 - MPMX19_03572 0.69 -0.7
993,938 - MPMX19_03572 0.69 +0.1
993,938 - MPMX19_03572 0.69 -0.7
994,222 + MPMX19_03572 0.87 -0.3
994,222 + MPMX19_03572 0.87 -1.6
994,223 - MPMX19_03572 0.87 -2.6
994,223 - MPMX19_03572 0.87 -2.3
994,223 - MPMX19_03572 0.87 +0.3
994,223 - MPMX19_03572 0.87 +0.5
994,223 - MPMX19_03572 0.87 -0.4
994,223 - MPMX19_03572 0.87 -0.8
994,439 + +0.3
994,565 + MPMX19_03573 0.15 +0.1
994,565 + MPMX19_03573 0.15 +0.1
994,566 - MPMX19_03573 0.15 +0.7
994,628 + MPMX19_03573 0.22 +0.1
994,628 + MPMX19_03573 0.22 -0.2
994,628 + MPMX19_03573 0.22 +1.4
994,628 + MPMX19_03573 0.22 -2.0
994,628 + MPMX19_03573 0.22 +0.6
994,628 + MPMX19_03573 0.22 -1.9
994,628 + MPMX19_03573 0.22 -2.4
994,628 + MPMX19_03573 0.22 +0.3
994,628 + MPMX19_03573 0.22 -0.6
994,629 - MPMX19_03573 0.22 +0.5
994,629 - MPMX19_03573 0.22 -0.5
994,629 - MPMX19_03573 0.22 +0.5
994,629 - MPMX19_03573 0.22 -0.1
994,629 - MPMX19_03573 0.22 -0.4
994,629 - MPMX19_03573 0.22 +2.2
994,853 + MPMX19_03573 0.48 -0.0
994,854 - MPMX19_03573 0.48 -0.1
994,988 + MPMX19_03573 0.64 +0.1
994,988 + MPMX19_03573 0.64 +0.4
994,988 + MPMX19_03573 0.64 -0.3
994,989 - MPMX19_03573 0.64 -0.2
995,126 + MPMX19_03573 0.80 -1.1
995,126 + MPMX19_03573 0.80 -1.0
995,126 + MPMX19_03573 0.80 -1.1
995,126 + MPMX19_03573 0.80 -0.2
995,127 - MPMX19_03573 0.80 +0.6
995,127 - MPMX19_03573 0.80 +0.6
995,127 - MPMX19_03573 0.80 +0.5
995,127 - MPMX19_03573 0.80 +1.0
995,127 - MPMX19_03573 0.80 -0.1
995,316 + -0.5
995,317 - +1.5
995,318 + -0.4
995,318 + +0.3
995,321 + -0.5
995,322 - -1.3
995,349 - -0.5
995,404 + +0.8
995,404 + -1.7
995,404 + +0.4
995,404 + -0.3
995,404 + -0.5
995,404 + -1.2
995,404 + +1.1
995,405 - -1.3
995,405 - -0.9
995,405 - -0.2
995,405 - +0.4
995,405 - +0.1
995,405 - -1.0
995,948 + MPMX19_03574 0.62 -0.9
995,948 + MPMX19_03574 0.62 -1.1
995,948 + MPMX19_03574 0.62 +0.0
995,948 + MPMX19_03574 0.62 -0.3
995,948 + MPMX19_03574 0.62 -0.3
995,948 + MPMX19_03574 0.62 +0.6
995,948 + MPMX19_03574 0.62 +1.9
995,948 + MPMX19_03574 0.62 +0.3
995,948 + MPMX19_03574 0.62 -1.1
995,949 - MPMX19_03574 0.62 -0.5
995,949 - MPMX19_03574 0.62 -0.3
995,949 - MPMX19_03574 0.62 +1.5
995,949 - MPMX19_03574 0.62 -0.8
995,951 - MPMX19_03574 0.62 -0.6
996,008 + MPMX19_03574 0.69 -0.3

Or see this region's nucleotide sequence