Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03471

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03469 and MPMX19_03470 overlap by 4 nucleotidesMPMX19_03470 and MPMX19_03471 overlap by 4 nucleotidesMPMX19_03471 and MPMX19_03472 overlap by 4 nucleotidesMPMX19_03472 and MPMX19_03473 are separated by 217 nucleotides MPMX19_03469: MPMX19_03469 - hypothetical protein, at 879,509 to 880,183 _03469 MPMX19_03470: MPMX19_03470 - Phosphatidylinositol phosphate synthase, at 880,180 to 880,860 _03470 MPMX19_03471: MPMX19_03471 - Bifunctional protein Aas, at 880,857 to 884,270 _03471 MPMX19_03472: MPMX19_03472 - Fatty acid metabolism regulator protein, at 884,267 to 884,875 _03472 MPMX19_03473: MPMX19_03473 - hypothetical protein, at 885,093 to 885,506 _03473 Position (kb) 880 881 882 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 879.969 kb on + strand, within MPMX19_03469at 879.969 kb on + strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.311 kb on - strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.446 kb on - strand, within MPMX19_03470at 880.505 kb on + strand, within MPMX19_03470at 880.559 kb on + strand, within MPMX19_03470at 880.559 kb on + strand, within MPMX19_03470at 880.560 kb on - strand, within MPMX19_03470at 881.496 kb on - strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.498 kb on - strand, within MPMX19_03471at 881.560 kb on + strand, within MPMX19_03471at 881.561 kb on - strand, within MPMX19_03471at 881.566 kb on + strand, within MPMX19_03471at 881.566 kb on + strand, within MPMX19_03471at 881.567 kb on - strand, within MPMX19_03471at 881.567 kb on - strand, within MPMX19_03471at 881.638 kb on + strand, within MPMX19_03471at 881.638 kb on + strand, within MPMX19_03471at 882.298 kb on + strand, within MPMX19_03471at 882.299 kb on - strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.132 kb on + strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.133 kb on - strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.150 kb on + strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.151 kb on - strand, within MPMX19_03471at 883.210 kb on + strand, within MPMX19_03471at 883.210 kb on + strand, within MPMX19_03471at 883.211 kb on - strand, within MPMX19_03471at 883.211 kb on - strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.156 kb on - strandat 884.156 kb on - strandat 884.394 kb on + strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.470 kb on + strand, within MPMX19_03472at 884.471 kb on - strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.698 kb on - strand, within MPMX19_03472at 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.949 kb on + strandat 884.981 kb on + strandat 884.981 kb on + strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.984 kb on - strandat 884.984 kb on - strandat 884.991 kb on - strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.132 kb on + strandat 885.132 kb on + strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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879,969 + MPMX19_03469 0.68 -0.9
879,969 + MPMX19_03469 0.68 -0.3
879,970 - MPMX19_03469 0.68 +0.8
879,970 - MPMX19_03469 0.68 -0.2
880,068 + MPMX19_03469 0.83 +0.2
880,068 + MPMX19_03469 0.83 -0.1
880,068 + MPMX19_03469 0.83 -0.4
880,068 + MPMX19_03469 0.83 +0.2
880,068 + MPMX19_03469 0.83 -0.2
880,068 + MPMX19_03469 0.83 -0.5
880,069 - MPMX19_03469 0.83 +1.1
880,069 - MPMX19_03469 0.83 -1.2
880,069 - MPMX19_03469 0.83 -1.6
880,069 - MPMX19_03469 0.83 -1.5
880,069 - MPMX19_03469 0.83 -1.1
880,310 + MPMX19_03470 0.19 +0.8
880,310 + MPMX19_03470 0.19 -2.7
880,310 + MPMX19_03470 0.19 -0.6
880,311 - MPMX19_03470 0.19 -0.3
880,445 + MPMX19_03470 0.39 +1.7
880,445 + MPMX19_03470 0.39 -0.6
880,445 + MPMX19_03470 0.39 +0.3
880,446 - MPMX19_03470 0.39 +0.1
880,505 + MPMX19_03470 0.48 -0.5
880,559 + MPMX19_03470 0.56 +0.3
880,559 + MPMX19_03470 0.56 -1.5
880,560 - MPMX19_03470 0.56 -1.7
881,496 - MPMX19_03471 0.19 +0.1
881,497 + MPMX19_03471 0.19 +1.2
881,497 + MPMX19_03471 0.19 +0.4
881,497 + MPMX19_03471 0.19 +1.2
881,497 + MPMX19_03471 0.19 -0.5
881,497 + MPMX19_03471 0.19 -1.1
881,498 - MPMX19_03471 0.19 +0.5
881,560 + MPMX19_03471 0.21 -0.8
881,561 - MPMX19_03471 0.21 -0.1
881,566 + MPMX19_03471 0.21 -0.3
881,566 + MPMX19_03471 0.21 -0.5
881,567 - MPMX19_03471 0.21 +0.5
881,567 - MPMX19_03471 0.21 +0.7
881,638 + MPMX19_03471 0.23 +3.0
881,638 + MPMX19_03471 0.23 +0.7
882,298 + MPMX19_03471 0.42 -0.0
882,299 - MPMX19_03471 0.42 -1.1
883,132 + MPMX19_03471 0.67 -0.3
883,132 + MPMX19_03471 0.67 -0.7
883,132 + MPMX19_03471 0.67 -0.0
883,132 + MPMX19_03471 0.67 -0.6
883,132 + MPMX19_03471 0.67 +1.3
883,132 + MPMX19_03471 0.67 +0.5
883,132 + MPMX19_03471 0.67 -0.2
883,132 + MPMX19_03471 0.67 -0.8
883,132 + MPMX19_03471 0.67 -1.5
883,133 - MPMX19_03471 0.67 +0.1
883,133 - MPMX19_03471 0.67 -0.1
883,133 - MPMX19_03471 0.67 -1.6
883,133 - MPMX19_03471 0.67 -1.1
883,133 - MPMX19_03471 0.67 -2.3
883,133 - MPMX19_03471 0.67 -1.6
883,133 - MPMX19_03471 0.67 -0.6
883,133 - MPMX19_03471 0.67 -0.8
883,150 + MPMX19_03471 0.67 -0.1
883,150 + MPMX19_03471 0.67 +1.3
883,150 + MPMX19_03471 0.67 +0.8
883,150 + MPMX19_03471 0.67 -0.4
883,150 + MPMX19_03471 0.67 -0.9
883,150 + MPMX19_03471 0.67 -1.5
883,151 - MPMX19_03471 0.67 +0.5
883,151 - MPMX19_03471 0.67 -0.8
883,151 - MPMX19_03471 0.67 -1.2
883,151 - MPMX19_03471 0.67 -3.1
883,151 - MPMX19_03471 0.67 -0.9
883,151 - MPMX19_03471 0.67 -0.9
883,151 - MPMX19_03471 0.67 -1.3
883,151 - MPMX19_03471 0.67 -0.4
883,151 - MPMX19_03471 0.67 +0.4
883,151 - MPMX19_03471 0.67 +0.3
883,151 - MPMX19_03471 0.67 +0.7
883,151 - MPMX19_03471 0.67 +1.1
883,210 + MPMX19_03471 0.69 +0.5
883,210 + MPMX19_03471 0.69 -1.2
883,211 - MPMX19_03471 0.69 -2.1
883,211 - MPMX19_03471 0.69 -1.0
883,438 + MPMX19_03471 0.76 -0.0
883,438 + MPMX19_03471 0.76 -1.5
883,438 + MPMX19_03471 0.76 -0.3
883,438 + MPMX19_03471 0.76 -1.9
883,438 + MPMX19_03471 0.76 -1.6
883,438 + MPMX19_03471 0.76 -2.2
883,439 - MPMX19_03471 0.76 +0.4
883,439 - MPMX19_03471 0.76 +1.4
883,439 - MPMX19_03471 0.76 -1.9
883,439 - MPMX19_03471 0.76 -0.8
883,885 + MPMX19_03471 0.89 +0.4
883,885 + MPMX19_03471 0.89 -0.2
883,885 + MPMX19_03471 0.89 +2.3
883,885 + MPMX19_03471 0.89 -0.3
883,885 + MPMX19_03471 0.89 -2.4
883,885 + MPMX19_03471 0.89 +0.2
884,155 + -0.2
884,155 + +0.4
884,155 + -0.7
884,155 + -0.5
884,155 + -1.3
884,155 + -0.1
884,155 + -0.4
884,155 + -2.2
884,155 + -1.2
884,156 - +0.2
884,156 - -0.6
884,394 + MPMX19_03472 0.21 +0.1
884,395 - MPMX19_03472 0.21 -0.6
884,395 - MPMX19_03472 0.21 +1.1
884,470 + MPMX19_03472 0.33 -0.2
884,471 - MPMX19_03472 0.33 -1.1
884,697 + MPMX19_03472 0.71 +0.3
884,697 + MPMX19_03472 0.71 -0.1
884,697 + MPMX19_03472 0.71 +1.0
884,698 - MPMX19_03472 0.71 +1.9
884,944 - +0.5
884,944 - +0.1
884,944 - +0.1
884,944 - +0.1
884,948 - -0.6
884,948 - -0.8
884,948 - -1.3
884,949 + +0.7
884,981 + +0.1
884,981 + -0.4
884,982 - -0.6
884,982 - -0.3
884,982 - +1.7
884,984 - +0.5
884,984 - -0.3
884,991 - -0.1
885,092 + -0.4
885,092 + +1.0
885,092 + +0.1
885,092 + +0.1
885,092 + +2.3
885,092 + -1.1
885,092 + +0.4
885,093 - -0.9
885,093 - -0.2
885,093 - -0.3
885,093 - +1.1
885,132 + -0.0
885,132 + -1.1
885,133 - -1.2
885,133 - -0.5
885,133 - +1.4
885,186 + MPMX19_03473 0.22 -0.4
885,186 + MPMX19_03473 0.22 -0.1
885,186 + MPMX19_03473 0.22 -0.5
885,187 - MPMX19_03473 0.23 -0.1
885,187 - MPMX19_03473 0.23 -0.1
885,187 - MPMX19_03473 0.23 -1.1
885,187 - MPMX19_03473 0.23 +1.3
885,187 - MPMX19_03473 0.23 +0.0

Or see this region's nucleotide sequence