Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03305

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03304 and MPMX19_03305 are separated by 19 nucleotidesMPMX19_03305 and MPMX19_03306 are separated by 31 nucleotides MPMX19_03304: MPMX19_03304 - Pyridoxal 4-dehydrogenase, at 650,919 to 651,947 _03304 MPMX19_03305: MPMX19_03305 - L-fucose mutarotase, at 651,967 to 652,422 _03305 MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635 _03306 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1at 651.019 kb on - strandat 651.019 kb on - strandat 651.105 kb on + strand, within MPMX19_03304at 651.105 kb on + strand, within MPMX19_03304at 651.105 kb on + strand, within MPMX19_03304at 651.106 kb on - strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.235 kb on - strand, within MPMX19_03304at 651.271 kb on - strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.687 kb on + strand, within MPMX19_03304at 651.688 kb on - strand, within MPMX19_03304at 651.875 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.373 kb on - strand, within MPMX19_03305at 652.420 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.581 kb on - strand, within MPMX19_03306at 652.941 kb on + strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.967 kb on + strand, within MPMX19_03306at 652.968 kb on - strand, within MPMX19_03306

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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651,019 - +0.2
651,019 - +0.8
651,105 + MPMX19_03304 0.18 -1.8
651,105 + MPMX19_03304 0.18 +0.8
651,105 + MPMX19_03304 0.18 -0.9
651,106 - MPMX19_03304 0.18 +0.0
651,234 + MPMX19_03304 0.31 +0.9
651,234 + MPMX19_03304 0.31 +0.2
651,234 + MPMX19_03304 0.31 -0.1
651,235 - MPMX19_03304 0.31 +0.4
651,271 - MPMX19_03304 0.34 -0.3
651,276 + MPMX19_03304 0.35 -0.9
651,276 + MPMX19_03304 0.35 +1.0
651,276 + MPMX19_03304 0.35 -1.1
651,276 + MPMX19_03304 0.35 -1.1
651,276 + MPMX19_03304 0.35 +0.7
651,277 - MPMX19_03304 0.35 -1.6
651,277 - MPMX19_03304 0.35 -0.6
651,277 - MPMX19_03304 0.35 +0.4
651,681 + MPMX19_03304 0.74 -0.4
651,681 + MPMX19_03304 0.74 -0.2
651,681 + MPMX19_03304 0.74 -1.5
651,682 - MPMX19_03304 0.74 -0.3
651,682 - MPMX19_03304 0.74 +0.7
651,687 + MPMX19_03304 0.75 -0.8
651,688 - MPMX19_03304 0.75 -0.9
651,875 + -0.3
651,959 + -0.0
651,959 + -0.5
651,959 + -0.9
651,959 + -0.4
651,960 - -0.5
651,960 - -0.6
651,960 - +0.5
651,960 - +0.2
651,960 - -0.8
652,318 + MPMX19_03305 0.77 +0.7
652,318 + MPMX19_03305 0.77 -0.9
652,318 + MPMX19_03305 0.77 +0.1
652,318 + MPMX19_03305 0.77 +1.1
652,318 + MPMX19_03305 0.77 +0.1
652,319 - MPMX19_03305 0.77 -0.5
652,319 - MPMX19_03305 0.77 +0.7
652,319 - MPMX19_03305 0.77 +1.7
652,319 - MPMX19_03305 0.77 +0.0
652,319 - MPMX19_03305 0.77 -2.0
652,372 + MPMX19_03305 0.89 -0.8
652,372 + MPMX19_03305 0.89 -0.2
652,373 - MPMX19_03305 0.89 +1.7
652,420 + -1.1
652,502 + +1.0
652,502 + -1.1
652,502 + +0.9
652,580 + MPMX19_03306 0.11 +0.5
652,580 + MPMX19_03306 0.11 -0.0
652,580 + MPMX19_03306 0.11 -0.3
652,580 + MPMX19_03306 0.11 +0.1
652,581 - MPMX19_03306 0.11 +0.7
652,941 + MPMX19_03306 0.41 -1.6
652,942 - MPMX19_03306 0.41 -1.1
652,942 - MPMX19_03306 0.41 -0.3
652,942 - MPMX19_03306 0.41 +0.0
652,967 + MPMX19_03306 0.43 -0.6
652,968 - MPMX19_03306 0.43 -0.8

Or see this region's nucleotide sequence