Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03298

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03296 and MPMX19_03297 overlap by 4 nucleotidesMPMX19_03297 and MPMX19_03298 are separated by 11 nucleotidesMPMX19_03298 and MPMX19_03299 are separated by 29 nucleotides MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093 _03296 MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803 _03297 MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546 _03298 MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475 _03299 Position (kb) 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.885 kb on - strand, within MPMX19_03296at 644.224 kb on + strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.304 kb on - strand, within MPMX19_03297at 644.808 kb on + strandat 645.008 kb on + strand, within MPMX19_03298at 645.008 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.462 kb on - strand, within MPMX19_03298at 645.644 kb on + strandat 645.644 kb on + strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.934 kb on + strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 645.935 kb on - strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.048 kb on + strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.049 kb on - strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.138 kb on + strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299at 646.139 kb on - strand, within MPMX19_03299

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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643,848 + MPMX19_03296 0.74 -1.0
643,848 + MPMX19_03296 0.74 +0.7
643,848 + MPMX19_03296 0.74 +0.0
643,849 - MPMX19_03296 0.74 -1.2
643,849 - MPMX19_03296 0.74 -0.0
643,849 - MPMX19_03296 0.74 -0.8
643,849 - MPMX19_03296 0.74 -0.3
643,849 - MPMX19_03296 0.74 -2.5
643,884 + MPMX19_03296 0.78 -1.5
643,884 + MPMX19_03296 0.78 -0.4
643,884 + MPMX19_03296 0.78 -1.0
643,884 + MPMX19_03296 0.78 -2.0
643,885 - MPMX19_03296 0.78 -0.3
644,224 + MPMX19_03297 0.19 +0.7
644,225 - MPMX19_03297 0.19 -1.0
644,225 - MPMX19_03297 0.19 -0.3
644,225 - MPMX19_03297 0.19 -0.1
644,304 - MPMX19_03297 0.30 -0.1
644,808 + +0.8
645,008 + MPMX19_03298 0.26 +0.3
645,008 + MPMX19_03298 0.26 +1.1
645,461 + MPMX19_03298 0.88 -0.3
645,461 + MPMX19_03298 0.88 +0.9
645,462 - MPMX19_03298 0.88 +0.4
645,644 + -0.7
645,644 + +0.0
645,645 - -1.7
645,645 - +0.7
645,645 - -3.0
645,645 - -1.3
645,645 - +0.2
645,645 - -0.3
645,645 - -1.5
645,934 + MPMX19_03299 0.40 +0.4
645,934 + MPMX19_03299 0.40 +0.0
645,934 + MPMX19_03299 0.40 +0.2
645,934 + MPMX19_03299 0.40 +0.1
645,934 + MPMX19_03299 0.40 -2.3
645,934 + MPMX19_03299 0.40 +0.2
645,934 + MPMX19_03299 0.40 -1.2
645,935 - MPMX19_03299 0.40 -0.9
645,935 - MPMX19_03299 0.40 -1.2
645,935 - MPMX19_03299 0.40 +0.7
645,935 - MPMX19_03299 0.40 -1.6
645,935 - MPMX19_03299 0.40 -0.3
646,048 + MPMX19_03299 0.52 -0.7
646,048 + MPMX19_03299 0.52 -1.1
646,049 - MPMX19_03299 0.53 -0.5
646,049 - MPMX19_03299 0.53 -1.0
646,049 - MPMX19_03299 0.53 -0.0
646,049 - MPMX19_03299 0.53 +0.7
646,049 - MPMX19_03299 0.53 +1.4
646,138 + MPMX19_03299 0.62 +0.1
646,138 + MPMX19_03299 0.62 -1.1
646,138 + MPMX19_03299 0.62 -0.6
646,138 + MPMX19_03299 0.62 +0.5
646,138 + MPMX19_03299 0.62 -0.1
646,139 - MPMX19_03299 0.63 -0.1
646,139 - MPMX19_03299 0.63 -0.7
646,139 - MPMX19_03299 0.63 -0.0
646,139 - MPMX19_03299 0.63 -1.0
646,139 - MPMX19_03299 0.63 -1.4

Or see this region's nucleotide sequence