Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03126

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03125 and MPMX19_03126 are separated by 20 nucleotidesMPMX19_03126 and MPMX19_03127 overlap by 20 nucleotides MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907 _03125 MPMX19_03126: MPMX19_03126 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 413,928 to 414,449 _03126 MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404 _03127 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1at 412.942 kb on + strand, within MPMX19_03125at 412.942 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.173 kb on + strand, within MPMX19_03125at 413.174 kb on - strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.425 kb on + strand, within MPMX19_03125at 413.426 kb on - strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.939 kb on - strandat 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.435 kb on + strandat 414.436 kb on - strandat 414.436 kb on - strandat 414.979 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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412,942 + MPMX19_03125 0.36 -0.1
412,942 + MPMX19_03125 0.36 -1.1
413,047 + MPMX19_03125 0.43 +0.2
413,047 + MPMX19_03125 0.43 +0.4
413,047 + MPMX19_03125 0.43 -0.0
413,047 + MPMX19_03125 0.43 -0.1
413,047 + MPMX19_03125 0.43 +0.1
413,048 - MPMX19_03125 0.43 +0.3
413,048 - MPMX19_03125 0.43 -0.6
413,048 - MPMX19_03125 0.43 +1.1
413,048 - MPMX19_03125 0.43 -1.1
413,048 - MPMX19_03125 0.43 -1.7
413,048 - MPMX19_03125 0.43 -0.4
413,048 - MPMX19_03125 0.43 +1.1
413,048 - MPMX19_03125 0.43 +0.5
413,162 + MPMX19_03125 0.50 -0.3
413,162 + MPMX19_03125 0.50 -0.3
413,162 + MPMX19_03125 0.50 -0.4
413,162 + MPMX19_03125 0.50 -0.9
413,162 + MPMX19_03125 0.50 -0.3
413,163 - MPMX19_03125 0.50 -1.0
413,163 - MPMX19_03125 0.50 -0.5
413,163 - MPMX19_03125 0.50 -0.2
413,163 - MPMX19_03125 0.50 -0.3
413,163 - MPMX19_03125 0.50 -0.6
413,163 - MPMX19_03125 0.50 -2.1
413,163 - MPMX19_03125 0.50 -0.3
413,163 - MPMX19_03125 0.50 -0.5
413,163 - MPMX19_03125 0.50 +0.0
413,163 - MPMX19_03125 0.50 +0.4
413,173 + MPMX19_03125 0.51 +0.1
413,174 - MPMX19_03125 0.51 +0.3
413,248 + MPMX19_03125 0.56 -1.0
413,248 + MPMX19_03125 0.56 -0.5
413,248 + MPMX19_03125 0.56 -1.2
413,248 + MPMX19_03125 0.56 +1.2
413,248 + MPMX19_03125 0.56 -1.0
413,248 + MPMX19_03125 0.56 +1.3
413,248 + MPMX19_03125 0.56 +0.5
413,248 + MPMX19_03125 0.56 -1.4
413,248 + MPMX19_03125 0.56 -0.4
413,249 - MPMX19_03125 0.56 +1.1
413,249 - MPMX19_03125 0.56 +0.9
413,249 - MPMX19_03125 0.56 +1.0
413,249 - MPMX19_03125 0.56 +0.5
413,249 - MPMX19_03125 0.56 -0.7
413,425 + MPMX19_03125 0.68 +0.4
413,426 - MPMX19_03125 0.68 +1.2
413,452 + MPMX19_03125 0.70 +0.6
413,452 + MPMX19_03125 0.70 -0.4
413,452 + MPMX19_03125 0.70 -1.0
413,452 + MPMX19_03125 0.70 -0.3
413,453 - MPMX19_03125 0.70 -0.3
413,453 - MPMX19_03125 0.70 -1.7
413,453 - MPMX19_03125 0.70 -1.3
413,939 - +1.5
414,189 + MPMX19_03126 0.50 -0.3
414,189 + MPMX19_03126 0.50 -0.4
414,189 + MPMX19_03126 0.50 -1.0
414,189 + MPMX19_03126 0.50 -0.6
414,189 + MPMX19_03126 0.50 -0.9
414,190 - MPMX19_03126 0.50 -0.9
414,190 - MPMX19_03126 0.50 +0.7
414,190 - MPMX19_03126 0.50 -1.4
414,190 - MPMX19_03126 0.50 -1.6
414,190 - MPMX19_03126 0.50 -0.9
414,435 + -0.7
414,436 - +1.2
414,436 - +0.0
414,979 + MPMX19_03127 0.56 +0.7
415,234 + MPMX19_03127 0.82 +0.5
415,234 + MPMX19_03127 0.82 -0.7
415,234 + MPMX19_03127 0.82 -0.3
415,235 - MPMX19_03127 0.83 -0.2
415,235 - MPMX19_03127 0.83 -0.7
415,235 - MPMX19_03127 0.83 -1.0
415,235 - MPMX19_03127 0.83 -0.7

Or see this region's nucleotide sequence