Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00722 and MPMX19_00723 are separated by 168 nucleotides MPMX19_00723 and MPMX19_00724 are separated by 396 nucleotides MPMX19_00724 and MPMX19_00725 are separated by 128 nucleotides
MPMX19_00722: MPMX19_00722 - Protein YciF, at 744,905 to 745,417
_00722
MPMX19_00723: MPMX19_00723 - hypothetical protein, at 745,586 to 745,816
_00723
MPMX19_00724: MPMX19_00724 - hypothetical protein, at 746,213 to 746,740
_00724
MPMX19_00725: MPMX19_00725 - Transcriptional regulatory protein ros, at 746,869 to 747,312
_00725
Position (kb) 746
747 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.812 kb on - strand at 745.812 kb on - strand at 745.863 kb on + strand at 745.917 kb on - strand at 745.997 kb on + strand at 745.998 kb on - strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.063 kb on - strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.853 kb on + strand at 746.862 kb on + strand at 746.862 kb on + strand at 746.862 kb on + strand at 746.863 kb on - strand at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 747.023 kb on + strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.182 kb on + strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.189 kb on + strand, within MPMX19_00725 at 747.189 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.287 kb on - strand at 747.359 kb on + strand at 747.360 kb on - strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.381 kb on + strand at 747.381 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.491 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.506 kb on - strand at 747.506 kb on - strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.646 kb on - strand at 747.646 kb on - strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 745,365 + MPMX19_00722 0.90 -1.9 745,365 + MPMX19_00722 0.90 -1.0 745,365 + MPMX19_00722 0.90 -1.2 745,365 + MPMX19_00722 0.90 -0.3 745,365 + MPMX19_00722 0.90 +0.9 745,365 + MPMX19_00722 0.90 +0.3 745,365 + MPMX19_00722 0.90 +0.3 745,365 + MPMX19_00722 0.90 +0.1 745,365 + MPMX19_00722 0.90 -1.8 745,366 - +0.3 745,366 - -0.0 745,366 - -0.1 745,366 - -0.3 745,366 - +0.7 745,366 - -0.1 745,366 - -0.7 745,366 - -0.6 745,366 - -0.7 745,534 + +0.1 745,534 + +0.2 745,534 + -0.0 745,534 + +0.4 745,534 + -0.2 745,534 + -0.2 745,534 + -0.9 745,535 - -1.7 745,535 - +0.7 745,535 - -0.9 745,539 + -1.0 745,539 + -1.6 745,539 + -0.2 745,631 + MPMX19_00723 0.19 +1.3 745,631 + MPMX19_00723 0.19 -1.3 745,631 + MPMX19_00723 0.19 -0.6 745,631 + MPMX19_00723 0.19 -0.3 745,631 + MPMX19_00723 0.19 -0.2 745,631 + MPMX19_00723 0.19 -1.1 745,631 + MPMX19_00723 0.19 +0.3 745,631 + MPMX19_00723 0.19 +0.9 745,631 + MPMX19_00723 0.19 +0.2 745,631 + MPMX19_00723 0.19 -1.0 745,631 + MPMX19_00723 0.19 +1.2 745,631 + MPMX19_00723 0.19 +0.1 745,631 + MPMX19_00723 0.19 +0.3 745,632 - MPMX19_00723 0.20 +0.7 745,632 - MPMX19_00723 0.20 +0.2 745,632 - MPMX19_00723 0.20 -0.9 745,632 - MPMX19_00723 0.20 -0.8 745,632 - MPMX19_00723 0.20 -1.3 745,632 - MPMX19_00723 0.20 -0.9 745,632 - MPMX19_00723 0.20 -1.0 745,632 - MPMX19_00723 0.20 -0.6 745,632 - MPMX19_00723 0.20 -0.4 745,632 - MPMX19_00723 0.20 -0.3 745,632 - MPMX19_00723 0.20 +0.1 745,632 - MPMX19_00723 0.20 +0.3 745,632 - MPMX19_00723 0.20 -1.2 745,811 + -1.2 745,811 + -0.3 745,811 + -0.0 745,811 + +0.3 745,811 + -0.2 745,812 - +0.8 745,812 - -0.3 745,863 + -2.6 745,917 - -1.8 745,997 + -0.8 745,998 - -0.6 746,023 + +1.5 746,023 + +0.4 746,023 + -0.5 746,024 - +1.2 746,024 - -0.7 746,024 - -2.6 746,024 - +1.8 746,024 - -1.6 746,024 - -1.7 746,024 - -2.1 746,029 + +0.3 746,029 + -2.1 746,029 + +0.1 746,029 + -0.7 746,029 + -0.0 746,029 + -0.3 746,029 + -0.9 746,029 + -2.1 746,029 + +0.8 746,029 + -0.7 746,029 + -1.1 746,029 + +0.7 746,029 + -1.8 746,029 + -0.3 746,029 + -0.3 746,029 + -0.5 746,029 + -0.3 746,029 + -0.7 746,029 + -0.8 746,029 + +0.3 746,029 + -0.0 746,029 + -0.7 746,029 + +0.5 746,029 + +0.9 746,029 + +0.3 746,029 + +0.3 746,029 + -0.5 746,029 + +1.3 746,029 + +0.7 746,029 + +0.3 746,029 + -1.0 746,030 - -0.7 746,030 - +0.3 746,030 - -0.8 746,030 - -1.0 746,030 - +0.1 746,030 - +0.5 746,030 - -0.4 746,030 - -0.7 746,030 - -0.7 746,030 - -2.0 746,062 + +0.1 746,062 + -0.5 746,062 + -0.0 746,062 + +0.7 746,062 + -1.3 746,062 + -0.7 746,063 - -0.3 746,071 + -0.1 746,071 + -1.1 746,071 + +0.1 746,071 + +0.1 746,071 + -0.3 746,224 + -0.6 746,224 + -0.6 746,224 + +0.0 746,738 + -0.1 746,738 + +0.3 746,738 + -0.7 746,738 + -0.3 746,739 - -0.9 746,739 - -0.9 746,739 - +0.2 746,739 - -1.0 746,739 - -1.1 746,739 - +0.2 746,739 - +1.1 746,739 - -0.1 746,853 + -0.2 746,862 + +1.1 746,862 + +2.7 746,862 + +0.1 746,863 - -0.1 746,951 + MPMX19_00725 0.18 +1.7 746,951 + MPMX19_00725 0.18 +0.7 746,951 + MPMX19_00725 0.18 -0.3 746,951 + MPMX19_00725 0.18 +0.8 746,952 - MPMX19_00725 0.19 +1.7 746,952 - MPMX19_00725 0.19 +0.1 746,952 - MPMX19_00725 0.19 +0.3 746,952 - MPMX19_00725 0.19 -0.1 747,023 + MPMX19_00725 0.35 +1.3 747,024 - MPMX19_00725 0.35 -0.1 747,024 - MPMX19_00725 0.35 +0.3 747,024 - MPMX19_00725 0.35 +0.1 747,024 - MPMX19_00725 0.35 -0.4 747,024 - MPMX19_00725 0.35 +0.8 747,086 + MPMX19_00725 0.49 +2.5 747,086 + MPMX19_00725 0.49 -2.0 747,087 - MPMX19_00725 0.49 -0.7 747,087 - MPMX19_00725 0.49 +1.5 747,087 - MPMX19_00725 0.49 -0.3 747,087 - MPMX19_00725 0.49 +0.7 747,182 + MPMX19_00725 0.70 +1.3 747,183 - MPMX19_00725 0.71 -0.3 747,183 - MPMX19_00725 0.71 +0.2 747,183 - MPMX19_00725 0.71 -0.4 747,183 - MPMX19_00725 0.71 +0.5 747,189 + MPMX19_00725 0.72 +0.5 747,189 - MPMX19_00725 0.72 +0.4 747,190 - MPMX19_00725 0.72 +1.2 747,190 - MPMX19_00725 0.72 +0.7 747,239 + MPMX19_00725 0.83 +0.1 747,239 + MPMX19_00725 0.83 +1.3 747,239 + MPMX19_00725 0.83 -1.0 747,239 + MPMX19_00725 0.83 -0.7 747,239 + MPMX19_00725 0.83 -0.5 747,239 + MPMX19_00725 0.83 +0.1 747,240 - MPMX19_00725 0.84 +0.9 747,240 - MPMX19_00725 0.84 +0.0 747,240 - MPMX19_00725 0.84 +0.7 747,240 - MPMX19_00725 0.84 +1.2 747,240 - MPMX19_00725 0.84 +0.3 747,240 - MPMX19_00725 0.84 +0.1 747,240 - MPMX19_00725 0.84 +0.2 747,240 - MPMX19_00725 0.84 +0.7 747,287 - +0.3 747,359 + -1.0 747,360 - -0.7 747,379 + +0.7 747,379 + -0.3 747,379 + -1.0 747,379 + +0.8 747,380 - -0.4 747,380 - -0.0 747,380 - +1.9 747,380 - +0.4 747,380 - -0.9 747,381 + -0.0 747,381 + +0.7 747,402 + +0.9 747,402 + -0.3 747,402 + +0.4 747,402 + -0.5 747,402 + -0.1 747,403 - -1.7 747,403 - -0.6 747,403 - -0.6 747,403 - -0.7 747,491 + +0.6 747,502 + +0.3 747,502 + -0.4 747,502 + +0.4 747,502 + +0.0 747,502 + -0.6 747,502 + -1.0 747,502 + -0.1 747,502 + -1.8 747,503 - +0.7 747,503 - -2.0 747,503 - +1.7 747,503 - -0.4 747,503 - +0.7 747,503 - -0.1 747,503 - +0.0 747,503 - +0.6 747,503 - -0.7 747,503 - -2.4 747,506 - +0.9 747,506 - +2.3 747,645 + +0.7 747,645 + -0.9 747,645 + +0.7 747,646 - -0.7 747,646 - +0.5 747,734 + +0.8 747,734 + +0.1 747,734 + -0.7 747,734 + +0.3 747,734 + -0.9 747,734 + +0.5 747,734 + -0.4 747,734 + +0.6 747,734 + +1.0 747,734 + +0.1 747,734 + -1.6 747,734 + -0.7 747,734 + -0.4 747,735 - -0.5 747,735 - +0.4 747,735 - -0.8 747,735 - +0.3 747,735 - -0.5 747,735 - -0.6 747,735 - -0.1 747,735 - +0.3 747,735 - -0.1 747,735 - +1.3 747,738 + -0.9 747,738 + -0.7 747,738 + +3.3 747,738 + -1.7 747,738 + -1.6 747,738 + -1.2 747,738 + -0.0 747,738 + -1.7 747,738 + -0.1 747,738 + -0.0 747,738 + +0.3 747,738 + -0.1 747,738 + +0.5 747,738 + -0.4 747,738 + +0.2 747,738 + +0.2 747,738 + +0.1 747,738 + -1.2 747,738 + -1.9 747,738 + -1.6 747,738 + -0.8 747,738 + +0.7 747,738 + -1.3 747,738 + +0.2 747,738 + -0.4 747,738 + -0.3 747,738 + +0.1 747,738 + -0.1 747,738 + +0.3 747,738 + +0.3 747,738 + -0.9 747,738 + -0.1 747,738 + -1.0 747,738 + +0.3 747,738 + +0.1 747,739 - -2.3 747,739 - -0.9 747,739 - -1.3 747,739 - -1.3 747,739 - +0.7 747,739 - -0.8 747,739 - +0.4 747,739 - -1.9 747,739 - +0.2 747,739 - -0.4 747,739 - -1.7 747,739 - -1.0 747,739 - -1.3 747,739 - -2.3 747,739 - -1.2 747,739 - -0.3 747,739 - +0.4 747,739 - +0.3 747,739 - +0.2 747,739 - -1.1 747,739 - -1.9 747,739 - -1.2
Or see this region's nucleotide sequence