Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00721 and MPMX19_00722 are separated by 126 nucleotides MPMX19_00722 and MPMX19_00723 are separated by 168 nucleotides MPMX19_00723 and MPMX19_00724 are separated by 396 nucleotides
MPMX19_00721: MPMX19_00721 - hypothetical protein, at 744,359 to 744,778
_00721
MPMX19_00722: MPMX19_00722 - Protein YciF, at 744,905 to 745,417
_00722
MPMX19_00723: MPMX19_00723 - hypothetical protein, at 745,586 to 745,816
_00723
MPMX19_00724: MPMX19_00724 - hypothetical protein, at 746,213 to 746,740
_00724
Position (kb) 745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.618 kb on + strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.619 kb on - strand, within MPMX19_00721 at 744.815 kb on + strand at 744.815 kb on + strand at 744.816 kb on - strand at 744.816 kb on - strand at 744.816 kb on - strand at 744.816 kb on - strand at 744.816 kb on - strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.855 kb on + strand at 744.856 kb on - strand at 744.856 kb on - strand at 744.856 kb on - strand at 744.856 kb on - strand at 744.856 kb on - strand at 744.898 kb on + strand at 744.898 kb on + strand at 744.898 kb on + strand at 744.898 kb on + strand at 744.898 kb on + strand at 744.898 kb on + strand at 744.899 kb on - strand at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.071 kb on + strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.072 kb on - strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.086 kb on + strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.087 kb on - strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.812 kb on - strand at 745.812 kb on - strand at 745.863 kb on + strand at 745.917 kb on - strand at 745.997 kb on + strand at 745.998 kb on - strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.063 kb on - strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 744,618 + MPMX19_00721 0.62 -1.3 744,618 + MPMX19_00721 0.62 -1.5 744,618 + MPMX19_00721 0.62 -0.9 744,618 + MPMX19_00721 0.62 -0.8 744,618 + MPMX19_00721 0.62 -0.9 744,618 + MPMX19_00721 0.62 +0.9 744,618 + MPMX19_00721 0.62 -0.3 744,618 + MPMX19_00721 0.62 +0.1 744,618 + MPMX19_00721 0.62 -0.8 744,618 + MPMX19_00721 0.62 -0.3 744,619 - MPMX19_00721 0.62 -1.1 744,619 - MPMX19_00721 0.62 +0.0 744,619 - MPMX19_00721 0.62 -1.7 744,619 - MPMX19_00721 0.62 -2.4 744,619 - MPMX19_00721 0.62 -0.5 744,619 - MPMX19_00721 0.62 +0.2 744,619 - MPMX19_00721 0.62 -0.4 744,619 - MPMX19_00721 0.62 +1.1 744,619 - MPMX19_00721 0.62 +1.2 744,619 - MPMX19_00721 0.62 -0.1 744,619 - MPMX19_00721 0.62 -0.2 744,619 - MPMX19_00721 0.62 -0.2 744,619 - MPMX19_00721 0.62 +1.3 744,619 - MPMX19_00721 0.62 -1.2 744,619 - MPMX19_00721 0.62 -0.4 744,619 - MPMX19_00721 0.62 +0.3 744,619 - MPMX19_00721 0.62 -1.5 744,815 + +0.1 744,815 + +0.2 744,816 - -0.7 744,816 - +0.3 744,816 - -0.7 744,816 - +0.3 744,816 - -1.9 744,855 + +0.1 744,855 + +0.7 744,855 + +1.7 744,855 + -0.3 744,855 + -1.0 744,855 + -0.6 744,855 + +0.1 744,856 - -1.1 744,856 - +0.1 744,856 - -0.3 744,856 - -0.4 744,856 - +0.4 744,898 + -1.7 744,898 + -0.5 744,898 + +0.7 744,898 + -0.2 744,898 + -0.7 744,898 + -0.2 744,899 - +0.5 745,071 + MPMX19_00722 0.32 +1.0 745,071 + MPMX19_00722 0.32 -0.1 745,071 + MPMX19_00722 0.32 -2.2 745,071 + MPMX19_00722 0.32 -0.2 745,071 + MPMX19_00722 0.32 -1.7 745,071 + MPMX19_00722 0.32 +0.1 745,071 + MPMX19_00722 0.32 +0.7 745,071 + MPMX19_00722 0.32 +0.5 745,071 + MPMX19_00722 0.32 -0.6 745,072 - MPMX19_00722 0.33 -1.0 745,072 - MPMX19_00722 0.33 +0.4 745,072 - MPMX19_00722 0.33 +0.5 745,072 - MPMX19_00722 0.33 +0.2 745,072 - MPMX19_00722 0.33 -0.2 745,072 - MPMX19_00722 0.33 +0.3 745,086 + MPMX19_00722 0.35 +0.2 745,086 + MPMX19_00722 0.35 -0.8 745,086 + MPMX19_00722 0.35 -0.6 745,086 + MPMX19_00722 0.35 -0.7 745,086 + MPMX19_00722 0.35 +0.2 745,086 + MPMX19_00722 0.35 -0.4 745,086 + MPMX19_00722 0.35 +0.4 745,086 + MPMX19_00722 0.35 +0.3 745,086 + MPMX19_00722 0.35 +0.7 745,086 + MPMX19_00722 0.35 +0.3 745,086 + MPMX19_00722 0.35 -1.9 745,087 - MPMX19_00722 0.35 -0.6 745,087 - MPMX19_00722 0.35 -0.9 745,087 - MPMX19_00722 0.35 -0.7 745,087 - MPMX19_00722 0.35 -2.0 745,087 - MPMX19_00722 0.35 -1.2 745,087 - MPMX19_00722 0.35 -2.1 745,087 - MPMX19_00722 0.35 -0.6 745,365 + MPMX19_00722 0.90 -1.9 745,365 + MPMX19_00722 0.90 -1.0 745,365 + MPMX19_00722 0.90 -1.2 745,365 + MPMX19_00722 0.90 -0.3 745,365 + MPMX19_00722 0.90 +0.9 745,365 + MPMX19_00722 0.90 +0.3 745,365 + MPMX19_00722 0.90 +0.3 745,365 + MPMX19_00722 0.90 +0.1 745,365 + MPMX19_00722 0.90 -1.8 745,366 - +0.3 745,366 - -0.0 745,366 - -0.1 745,366 - -0.3 745,366 - +0.7 745,366 - -0.1 745,366 - -0.7 745,366 - -0.6 745,366 - -0.7 745,534 + +0.1 745,534 + +0.2 745,534 + -0.0 745,534 + +0.4 745,534 + -0.2 745,534 + -0.2 745,534 + -0.9 745,535 - -1.7 745,535 - +0.7 745,535 - -0.9 745,539 + -1.0 745,539 + -1.6 745,539 + -0.2 745,631 + MPMX19_00723 0.19 +1.3 745,631 + MPMX19_00723 0.19 -1.3 745,631 + MPMX19_00723 0.19 -0.6 745,631 + MPMX19_00723 0.19 -0.3 745,631 + MPMX19_00723 0.19 -0.2 745,631 + MPMX19_00723 0.19 -1.1 745,631 + MPMX19_00723 0.19 +0.3 745,631 + MPMX19_00723 0.19 +0.9 745,631 + MPMX19_00723 0.19 +0.2 745,631 + MPMX19_00723 0.19 -1.0 745,631 + MPMX19_00723 0.19 +1.2 745,631 + MPMX19_00723 0.19 +0.1 745,631 + MPMX19_00723 0.19 +0.3 745,632 - MPMX19_00723 0.20 +0.7 745,632 - MPMX19_00723 0.20 +0.2 745,632 - MPMX19_00723 0.20 -0.9 745,632 - MPMX19_00723 0.20 -0.8 745,632 - MPMX19_00723 0.20 -1.3 745,632 - MPMX19_00723 0.20 -0.9 745,632 - MPMX19_00723 0.20 -1.0 745,632 - MPMX19_00723 0.20 -0.6 745,632 - MPMX19_00723 0.20 -0.4 745,632 - MPMX19_00723 0.20 -0.3 745,632 - MPMX19_00723 0.20 +0.1 745,632 - MPMX19_00723 0.20 +0.3 745,632 - MPMX19_00723 0.20 -1.2 745,811 + -1.2 745,811 + -0.3 745,811 + -0.0 745,811 + +0.3 745,811 + -0.2 745,812 - +0.8 745,812 - -0.3 745,863 + -2.6 745,917 - -1.8 745,997 + -0.8 745,998 - -0.6 746,023 + +1.5 746,023 + +0.4 746,023 + -0.5 746,024 - +1.2 746,024 - -0.7 746,024 - -2.6 746,024 - +1.8 746,024 - -1.6 746,024 - -1.7 746,024 - -2.1 746,029 + +0.3 746,029 + -2.1 746,029 + +0.1 746,029 + -0.7 746,029 + -0.0 746,029 + -0.3 746,029 + -0.9 746,029 + -2.1 746,029 + +0.8 746,029 + -0.7 746,029 + -1.1 746,029 + +0.7 746,029 + -1.8 746,029 + -0.3 746,029 + -0.3 746,029 + -0.5 746,029 + -0.3 746,029 + -0.7 746,029 + -0.8 746,029 + +0.3 746,029 + -0.0 746,029 + -0.7 746,029 + +0.5 746,029 + +0.9 746,029 + +0.3 746,029 + +0.3 746,029 + -0.5 746,029 + +1.3 746,029 + +0.7 746,029 + +0.3 746,029 + -1.0 746,030 - -0.7 746,030 - +0.3 746,030 - -0.8 746,030 - -1.0 746,030 - +0.1 746,030 - +0.5 746,030 - -0.4 746,030 - -0.7 746,030 - -0.7 746,030 - -2.0 746,062 + +0.1 746,062 + -0.5 746,062 + -0.0 746,062 + +0.7 746,062 + -1.3 746,062 + -0.7 746,063 - -0.3 746,071 + -0.1 746,071 + -1.1 746,071 + +0.1 746,071 + +0.1 746,071 + -0.3 746,224 + -0.6 746,224 + -0.6 746,224 + +0.0 746,738 + -0.1 746,738 + +0.3 746,738 + -0.7 746,738 + -0.3 746,739 - -0.9 746,739 - -0.9 746,739 - +0.2 746,739 - -1.0 746,739 - -1.1 746,739 - +0.2 746,739 - +1.1 746,739 - -0.1
Or see this region's nucleotide sequence