Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00494

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00492 and MPMX19_00493 are separated by 34 nucleotidesMPMX19_00493 and MPMX19_00494 are separated by 121 nucleotidesMPMX19_00494 and MPMX19_00495 are separated by 96 nucleotidesMPMX19_00495 and MPMX19_00496 are separated by 30 nucleotides MPMX19_00492: MPMX19_00492 - Cobalamin biosynthesis protein CbiB, at 492,604 to 493,587 _00492 MPMX19_00493: MPMX19_00493 - hypothetical protein, at 493,622 to 494,197 _00493 MPMX19_00494: MPMX19_00494 - hypothetical protein, at 494,319 to 494,462 _00494 MPMX19_00495: MPMX19_00495 - hypothetical protein, at 494,559 to 495,191 _00495 MPMX19_00496: MPMX19_00496 - hypothetical protein, at 495,222 to 496,658 _00496 Position (kb) 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1at 493.655 kb on + strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 494.233 kb on + strandat 494.233 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.237 kb on - strandat 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 495.289 kb on + strandat 495.289 kb on + strandat 495.289 kb on + strandat 495.290 kb on - strandat 495.290 kb on - strandat 495.331 kb on + strandat 495.331 kb on + strandat 495.331 kb on + strandat 495.331 kb on + strandat 495.332 kb on - strandat 495.332 kb on - strandat 495.332 kb on - strandat 495.332 kb on - strandat 495.332 kb on - strandat 495.419 kb on - strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.445 kb on + strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496at 495.446 kb on - strand, within MPMX19_00496

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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493,655 + +0.3
493,656 - -0.4
493,656 - -1.1
493,656 - -0.7
493,656 - +0.0
493,656 - +0.0
493,656 - +0.1
493,656 - -0.8
493,656 - +0.5
494,233 + +0.8
494,233 + +0.8
494,236 + -0.1
494,236 + +0.0
494,236 + +0.8
494,236 + -0.7
494,236 + +0.0
494,237 - -0.6
494,838 + MPMX19_00495 0.44 -2.0
494,838 + MPMX19_00495 0.44 +0.0
494,838 + MPMX19_00495 0.44 -1.0
494,838 + MPMX19_00495 0.44 -1.1
494,838 + MPMX19_00495 0.44 +1.2
494,839 - MPMX19_00495 0.44 +0.2
494,839 - MPMX19_00495 0.44 -1.3
494,839 - MPMX19_00495 0.44 -1.5
494,839 - MPMX19_00495 0.44 -0.4
494,839 - MPMX19_00495 0.44 +0.3
494,839 - MPMX19_00495 0.44 -0.2
494,839 - MPMX19_00495 0.44 +0.6
494,839 - MPMX19_00495 0.44 -1.4
494,839 - MPMX19_00495 0.44 -0.3
494,895 + MPMX19_00495 0.53 -0.8
494,895 + MPMX19_00495 0.53 +1.0
494,895 + MPMX19_00495 0.53 -0.4
494,895 + MPMX19_00495 0.53 +0.2
494,895 + MPMX19_00495 0.53 -0.9
494,895 + MPMX19_00495 0.53 -0.3
494,895 + MPMX19_00495 0.53 -0.6
494,895 + MPMX19_00495 0.53 -1.0
494,896 - MPMX19_00495 0.53 -1.0
494,896 - MPMX19_00495 0.53 -0.5
494,896 - MPMX19_00495 0.53 +0.2
494,896 - MPMX19_00495 0.53 +0.8
494,896 - MPMX19_00495 0.53 -1.0
494,896 - MPMX19_00495 0.53 -0.7
495,289 + -0.4
495,289 + +0.7
495,289 + -0.0
495,290 - -0.7
495,290 - -1.0
495,331 + -1.2
495,331 + -0.0
495,331 + -0.4
495,331 + -1.5
495,332 - -0.3
495,332 - -0.4
495,332 - -1.2
495,332 - +0.2
495,332 - -0.8
495,419 - MPMX19_00496 0.14 +0.1
495,445 + MPMX19_00496 0.16 -0.7
495,445 + MPMX19_00496 0.16 -0.6
495,445 + MPMX19_00496 0.16 -2.0
495,445 + MPMX19_00496 0.16 +0.0
495,445 + MPMX19_00496 0.16 -1.5
495,445 + MPMX19_00496 0.16 -1.0
495,445 + MPMX19_00496 0.16 -0.3
495,445 + MPMX19_00496 0.16 -0.4
495,445 + MPMX19_00496 0.16 -0.8
495,445 + MPMX19_00496 0.16 -0.1
495,445 + MPMX19_00496 0.16 +0.6
495,445 + MPMX19_00496 0.16 +0.4
495,445 + MPMX19_00496 0.16 -0.1
495,445 + MPMX19_00496 0.16 -0.8
495,445 + MPMX19_00496 0.16 -0.4
495,445 + MPMX19_00496 0.16 +0.0
495,445 + MPMX19_00496 0.16 -0.7
495,445 + MPMX19_00496 0.16 +0.8
495,445 + MPMX19_00496 0.16 -0.5
495,445 + MPMX19_00496 0.16 -0.6
495,445 + MPMX19_00496 0.16 -0.5
495,445 + MPMX19_00496 0.16 -0.3
495,445 + MPMX19_00496 0.16 +1.1
495,445 + MPMX19_00496 0.16 +1.0
495,445 + MPMX19_00496 0.16 +0.2
495,445 + MPMX19_00496 0.16 +0.0
495,445 + MPMX19_00496 0.16 +0.0
495,445 + MPMX19_00496 0.16 -0.5
495,445 + MPMX19_00496 0.16 -1.6
495,445 + MPMX19_00496 0.16 -0.3
495,445 + MPMX19_00496 0.16 -0.5
495,446 - MPMX19_00496 0.16 +0.0
495,446 - MPMX19_00496 0.16 -0.7
495,446 - MPMX19_00496 0.16 +1.3
495,446 - MPMX19_00496 0.16 +0.6
495,446 - MPMX19_00496 0.16 +1.6
495,446 - MPMX19_00496 0.16 -0.1
495,446 - MPMX19_00496 0.16 +0.3
495,446 - MPMX19_00496 0.16 +0.9
495,446 - MPMX19_00496 0.16 -0.8
495,446 - MPMX19_00496 0.16 -0.7
495,446 - MPMX19_00496 0.16 -0.6
495,446 - MPMX19_00496 0.16 -0.5
495,446 - MPMX19_00496 0.16 -0.4
495,446 - MPMX19_00496 0.16 -0.7
495,446 - MPMX19_00496 0.16 -2.0
495,446 - MPMX19_00496 0.16 -0.4
495,446 - MPMX19_00496 0.16 +0.6
495,446 - MPMX19_00496 0.16 -1.5
495,446 - MPMX19_00496 0.16 +0.2
495,446 - MPMX19_00496 0.16 -0.8
495,446 - MPMX19_00496 0.16 -1.4
495,446 - MPMX19_00496 0.16 +0.4
495,446 - MPMX19_00496 0.16 -0.8
495,446 - MPMX19_00496 0.16 -0.4
495,446 - MPMX19_00496 0.16 -1.0
495,446 - MPMX19_00496 0.16 -0.1
495,446 - MPMX19_00496 0.16 -1.0
495,446 - MPMX19_00496 0.16 -2.9

Or see this region's nucleotide sequence