Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00319 and MPMX19_00320 are separated by 146 nucleotides MPMX19_00320 and MPMX19_00321 are separated by 25 nucleotides MPMX19_00321 and MPMX19_00322 are separated by 276 nucleotides
MPMX19_00319: MPMX19_00319 - hypothetical protein, at 323,912 to 324,544
_00319
MPMX19_00320: MPMX19_00320 - hypothetical protein, at 324,691 to 325,335
_00320
MPMX19_00321: MPMX19_00321 - hypothetical protein, at 325,361 to 326,713
_00321
MPMX19_00322: MPMX19_00322 - Signal recognition particle protein, at 326,990 to 328,432
_00322
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.487 kb on + strand at 324.488 kb on - strand at 324.488 kb on - strand at 324.586 kb on + strand at 324.586 kb on + strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.652 kb on + strand at 324.653 kb on - strand at 324.653 kb on - strand at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.288 kb on + strand at 325.289 kb on - strand at 325.606 kb on + strand, within MPMX19_00321 at 325.607 kb on - strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.814 kb on + strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 325.815 kb on - strand, within MPMX19_00321 at 326.164 kb on + strand, within MPMX19_00321 at 326.165 kb on - strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.289 kb on + strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.290 kb on - strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.301 kb on + strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.302 kb on - strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.322 kb on + strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.323 kb on - strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.463 kb on + strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.464 kb on - strand, within MPMX19_00321 at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.722 kb on + strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.723 kb on - strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.731 kb on + strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.732 kb on - strand at 326.746 kb on - strand at 326.746 kb on - strand at 326.746 kb on - strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.833 kb on + strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.834 kb on - strand at 326.921 kb on + strand at 326.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 324,485 + +0.5 324,485 + +1.3 324,485 + -0.5 324,485 + +0.0 324,485 + -0.5 324,485 + +0.0 324,485 + -1.4 324,485 + +0.3 324,485 + -2.7 324,485 + -0.4 324,485 + -1.5 324,485 + +0.4 324,486 - +0.5 324,486 - -0.7 324,486 - -0.8 324,486 - -0.7 324,486 - -0.1 324,486 - -0.4 324,486 - -0.3 324,486 - +0.2 324,486 - +1.3 324,486 - +0.0 324,486 - -0.1 324,486 - +0.9 324,486 - -1.0 324,487 + -0.4 324,488 - -0.1 324,488 - -1.0 324,586 + -0.8 324,586 + -1.4 324,587 - +0.1 324,587 - +0.8 324,587 - +0.3 324,600 + -0.4 324,600 + -0.5 324,600 + -1.4 324,600 + -0.3 324,600 + -0.4 324,600 + -1.4 324,601 - +0.0 324,601 - -1.4 324,601 - -0.9 324,601 - -0.1 324,601 - +0.4 324,601 - -1.0 324,601 - -0.7 324,601 - -0.6 324,601 - -0.2 324,601 - +0.5 324,652 + -0.4 324,653 - -0.2 324,653 - -0.1 325,195 + MPMX19_00320 0.78 -0.8 325,195 + MPMX19_00320 0.78 -0.7 325,195 + MPMX19_00320 0.78 +0.4 325,195 + MPMX19_00320 0.78 -0.6 325,196 - MPMX19_00320 0.78 -0.2 325,196 - MPMX19_00320 0.78 -1.2 325,288 + -0.3 325,289 - -0.8 325,606 + MPMX19_00321 0.18 +0.4 325,607 - MPMX19_00321 0.18 +0.6 325,814 + MPMX19_00321 0.33 +0.7 325,814 + MPMX19_00321 0.33 +0.0 325,814 + MPMX19_00321 0.33 -1.0 325,814 + MPMX19_00321 0.33 -0.3 325,814 + MPMX19_00321 0.33 -0.6 325,814 + MPMX19_00321 0.33 -0.1 325,814 + MPMX19_00321 0.33 -2.3 325,814 + MPMX19_00321 0.33 -0.1 325,814 + MPMX19_00321 0.33 +0.8 325,814 + MPMX19_00321 0.33 +0.6 325,814 + MPMX19_00321 0.33 -0.3 325,814 + MPMX19_00321 0.33 +0.0 325,815 - MPMX19_00321 0.34 +0.8 325,815 - MPMX19_00321 0.34 -0.1 325,815 - MPMX19_00321 0.34 +0.8 325,815 - MPMX19_00321 0.34 -0.5 325,815 - MPMX19_00321 0.34 -1.0 325,815 - MPMX19_00321 0.34 +0.6 325,815 - MPMX19_00321 0.34 +0.3 325,815 - MPMX19_00321 0.34 -0.7 325,815 - MPMX19_00321 0.34 -0.6 325,815 - MPMX19_00321 0.34 -0.5 325,815 - MPMX19_00321 0.34 +0.6 325,815 - MPMX19_00321 0.34 -1.2 326,164 + MPMX19_00321 0.59 -1.2 326,165 - MPMX19_00321 0.59 +0.9 326,289 + MPMX19_00321 0.69 -0.2 326,289 + MPMX19_00321 0.69 -0.2 326,289 + MPMX19_00321 0.69 -0.1 326,289 + MPMX19_00321 0.69 +0.0 326,289 + MPMX19_00321 0.69 +0.8 326,290 - MPMX19_00321 0.69 +0.4 326,290 - MPMX19_00321 0.69 -0.4 326,290 - MPMX19_00321 0.69 -0.7 326,290 - MPMX19_00321 0.69 -0.1 326,301 + MPMX19_00321 0.69 -0.4 326,301 + MPMX19_00321 0.69 -1.0 326,301 + MPMX19_00321 0.69 +1.1 326,301 + MPMX19_00321 0.69 +0.1 326,301 + MPMX19_00321 0.69 -0.0 326,301 + MPMX19_00321 0.69 +0.2 326,301 + MPMX19_00321 0.69 +0.0 326,301 + MPMX19_00321 0.69 -1.5 326,301 + MPMX19_00321 0.69 +0.6 326,301 + MPMX19_00321 0.69 -0.1 326,301 + MPMX19_00321 0.69 -0.7 326,301 + MPMX19_00321 0.69 -2.1 326,301 + MPMX19_00321 0.69 -2.5 326,301 + MPMX19_00321 0.69 -0.4 326,301 + MPMX19_00321 0.69 -0.9 326,301 + MPMX19_00321 0.69 -0.7 326,301 + MPMX19_00321 0.69 -1.1 326,301 + MPMX19_00321 0.69 -2.7 326,301 + MPMX19_00321 0.69 -2.2 326,301 + MPMX19_00321 0.69 +0.0 326,301 + MPMX19_00321 0.69 +0.3 326,302 - MPMX19_00321 0.70 +0.2 326,302 - MPMX19_00321 0.70 +0.6 326,302 - MPMX19_00321 0.70 +0.2 326,302 - MPMX19_00321 0.70 -0.3 326,302 - MPMX19_00321 0.70 +0.9 326,302 - MPMX19_00321 0.70 +0.4 326,302 - MPMX19_00321 0.70 +0.7 326,302 - MPMX19_00321 0.70 +0.5 326,302 - MPMX19_00321 0.70 -1.1 326,302 - MPMX19_00321 0.70 -0.0 326,302 - MPMX19_00321 0.70 -1.8 326,302 - MPMX19_00321 0.70 -0.5 326,302 - MPMX19_00321 0.70 -0.7 326,302 - MPMX19_00321 0.70 -0.4 326,302 - MPMX19_00321 0.70 +0.0 326,302 - MPMX19_00321 0.70 +1.9 326,302 - MPMX19_00321 0.70 -0.9 326,302 - MPMX19_00321 0.70 -0.1 326,302 - MPMX19_00321 0.70 -1.1 326,322 + MPMX19_00321 0.71 -0.2 326,322 + MPMX19_00321 0.71 -1.5 326,322 + MPMX19_00321 0.71 +0.2 326,322 + MPMX19_00321 0.71 -0.3 326,322 + MPMX19_00321 0.71 +0.4 326,322 + MPMX19_00321 0.71 +0.9 326,322 + MPMX19_00321 0.71 -0.5 326,322 + MPMX19_00321 0.71 -0.5 326,322 + MPMX19_00321 0.71 +0.0 326,322 + MPMX19_00321 0.71 +0.3 326,323 - MPMX19_00321 0.71 +0.2 326,323 - MPMX19_00321 0.71 +0.1 326,323 - MPMX19_00321 0.71 +0.0 326,323 - MPMX19_00321 0.71 -0.5 326,323 - MPMX19_00321 0.71 -0.2 326,323 - MPMX19_00321 0.71 +0.5 326,463 + MPMX19_00321 0.81 -0.6 326,463 + MPMX19_00321 0.81 +0.0 326,463 + MPMX19_00321 0.81 -0.5 326,463 + MPMX19_00321 0.81 -0.8 326,463 + MPMX19_00321 0.81 +0.1 326,463 + MPMX19_00321 0.81 +0.7 326,463 + MPMX19_00321 0.81 +0.3 326,464 - MPMX19_00321 0.82 -1.4 326,464 - MPMX19_00321 0.82 -0.8 326,464 - MPMX19_00321 0.82 -1.0 326,464 - MPMX19_00321 0.82 -1.2 326,464 - MPMX19_00321 0.82 -1.2 326,464 - MPMX19_00321 0.82 +0.6 326,464 - MPMX19_00321 0.82 +0.8 326,464 - MPMX19_00321 0.82 -0.2 326,464 - MPMX19_00321 0.82 +0.5 326,722 + -0.4 326,722 + -1.8 326,722 + -0.7 326,722 + +0.3 326,722 + +1.1 326,722 + +1.3 326,722 + +0.2 326,722 + -0.5 326,722 + +0.9 326,722 + +0.0 326,722 + +0.7 326,723 - -0.2 326,723 - +1.6 326,723 - -0.2 326,723 - -0.7 326,723 - +0.4 326,723 - +0.2 326,723 - -1.7 326,723 - -0.2 326,723 - -0.8 326,723 - -1.2 326,731 + -0.6 326,731 + -0.7 326,731 + -1.4 326,731 + -0.8 326,731 + -0.7 326,731 + -0.1 326,731 + +0.5 326,732 - +0.0 326,732 - +0.9 326,732 - -1.7 326,732 - -1.2 326,732 - +0.2 326,732 - +1.6 326,732 - -0.2 326,732 - -0.2 326,732 - -1.0 326,732 - -0.5 326,732 - +0.7 326,732 - -0.7 326,732 - -0.9 326,732 - +0.3 326,746 - -1.0 326,746 - -0.2 326,746 - -2.1 326,833 + -0.9 326,833 + -0.3 326,833 + -0.5 326,833 + -1.7 326,833 + -0.1 326,833 + -1.0 326,833 + -0.4 326,833 + +0.3 326,833 + +0.3 326,833 + +0.2 326,833 + -0.4 326,833 + -1.5 326,834 - -0.4 326,834 - -0.4 326,834 - +0.1 326,834 - -2.7 326,834 - -0.5 326,834 - -1.6 326,834 - +0.0 326,834 - -0.3 326,834 - -1.3 326,834 - +0.2 326,921 + -0.6 326,921 + +1.0
Or see this region's nucleotide sequence