Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS12225

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS12215 and PagCFBP13505_RS12220 are separated by 143 nucleotidesPagCFBP13505_RS12220 and PagCFBP13505_RS12225 are separated by 36 nucleotidesPagCFBP13505_RS12225 and PagCFBP13505_RS12230 overlap by 4 nucleotidesPagCFBP13505_RS12230 and PagCFBP13505_RS12235 are separated by 26 nucleotides PagCFBP13505_RS12215: PagCFBP13505_RS12215 - oxidoreductase, at 50,737 to 51,750 _RS12215 PagCFBP13505_RS12220: PagCFBP13505_RS12220 - tetratricopeptide repeat protein, at 51,894 to 52,430 _RS12220 PagCFBP13505_RS12225: PagCFBP13505_RS12225 - RNA polymerase sigma factor, at 52,467 to 52,967 _RS12225 PagCFBP13505_RS12230: PagCFBP13505_RS12230 - hypothetical protein, at 52,964 to 53,755 _RS12230 PagCFBP13505_RS12235: PagCFBP13505_RS12235 - YceI family protein, at 53,782 to 54,360 _RS12235 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.523 kb on + strand, within PagCFBP13505_RS12215at 51.524 kb on - strand, within PagCFBP13505_RS12215at 51.524 kb on - strand, within PagCFBP13505_RS12215at 51.589 kb on + strand, within PagCFBP13505_RS12215at 51.589 kb on + strand, within PagCFBP13505_RS12215at 51.589 kb on + strand, within PagCFBP13505_RS12215at 51.590 kb on - strand, within PagCFBP13505_RS12215at 51.590 kb on - strand, within PagCFBP13505_RS12215at 51.590 kb on - strand, within PagCFBP13505_RS12215at 51.590 kb on - strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.592 kb on + strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.593 kb on - strand, within PagCFBP13505_RS12215at 51.612 kb on + strand, within PagCFBP13505_RS12215at 51.656 kb on + strandat 51.656 kb on + strandat 51.657 kb on - strandat 51.795 kb on + strandat 51.795 kb on + strandat 51.822 kb on + strandat 51.823 kb on - strandat 51.888 kb on + strandat 51.888 kb on + strandat 51.888 kb on + strandat 51.889 kb on - strandat 51.893 kb on + strandat 51.894 kb on - strandat 51.937 kb on + strandat 51.938 kb on - strandat 52.027 kb on - strand, within PagCFBP13505_RS12220at 52.027 kb on - strand, within PagCFBP13505_RS12220at 52.027 kb on - strand, within PagCFBP13505_RS12220at 52.027 kb on - strand, within PagCFBP13505_RS12220at 52.041 kb on - strand, within PagCFBP13505_RS12220at 52.096 kb on - strand, within PagCFBP13505_RS12220at 52.096 kb on - strand, within PagCFBP13505_RS12220at 52.152 kb on - strand, within PagCFBP13505_RS12220at 52.152 kb on - strand, within PagCFBP13505_RS12220at 52.170 kb on - strand, within PagCFBP13505_RS12220at 52.188 kb on + strand, within PagCFBP13505_RS12220at 52.189 kb on - strand, within PagCFBP13505_RS12220at 52.189 kb on - strand, within PagCFBP13505_RS12220at 52.197 kb on + strand, within PagCFBP13505_RS12220at 52.209 kb on - strand, within PagCFBP13505_RS12220at 52.232 kb on + strand, within PagCFBP13505_RS12220at 52.239 kb on + strand, within PagCFBP13505_RS12220at 52.239 kb on + strand, within PagCFBP13505_RS12220at 52.243 kb on - strand, within PagCFBP13505_RS12220at 52.277 kb on + strand, within PagCFBP13505_RS12220at 52.346 kb on - strand, within PagCFBP13505_RS12220at 52.386 kb on + strandat 52.386 kb on + strandat 52.515 kb on + strandat 52.515 kb on + strandat 52.515 kb on + strandat 52.516 kb on - strandat 52.516 kb on - strandat 52.672 kb on + strand, within PagCFBP13505_RS12225at 52.728 kb on - strand, within PagCFBP13505_RS12225at 52.728 kb on - strand, within PagCFBP13505_RS12225at 52.728 kb on - strand, within PagCFBP13505_RS12225at 52.769 kb on + strand, within PagCFBP13505_RS12225at 52.769 kb on + strand, within PagCFBP13505_RS12225at 52.770 kb on - strand, within PagCFBP13505_RS12225at 52.770 kb on - strand, within PagCFBP13505_RS12225at 52.770 kb on - strand, within PagCFBP13505_RS12225at 52.770 kb on - strand, within PagCFBP13505_RS12225at 52.805 kb on + strand, within PagCFBP13505_RS12225at 52.806 kb on - strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.825 kb on - strand, within PagCFBP13505_RS12225at 52.886 kb on + strand, within PagCFBP13505_RS12225at 52.887 kb on - strand, within PagCFBP13505_RS12225at 52.982 kb on - strandat 53.106 kb on + strand, within PagCFBP13505_RS12230at 53.116 kb on + strand, within PagCFBP13505_RS12230at 53.116 kb on + strand, within PagCFBP13505_RS12230at 53.117 kb on - strand, within PagCFBP13505_RS12230at 53.277 kb on + strand, within PagCFBP13505_RS12230at 53.278 kb on - strand, within PagCFBP13505_RS12230at 53.342 kb on - strand, within PagCFBP13505_RS12230at 53.363 kb on + strand, within PagCFBP13505_RS12230at 53.365 kb on + strand, within PagCFBP13505_RS12230at 53.365 kb on + strand, within PagCFBP13505_RS12230at 53.375 kb on + strand, within PagCFBP13505_RS12230at 53.375 kb on + strand, within PagCFBP13505_RS12230at 53.441 kb on - strand, within PagCFBP13505_RS12230at 53.441 kb on - strand, within PagCFBP13505_RS12230at 53.570 kb on + strand, within PagCFBP13505_RS12230at 53.591 kb on - strand, within PagCFBP13505_RS12230at 53.682 kb on - strandat 53.682 kb on - strandat 53.777 kb on + strandat 53.786 kb on - strandat 53.900 kb on - strand, within PagCFBP13505_RS12235at 53.900 kb on - strand, within PagCFBP13505_RS12235

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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51,523 + PagCFBP13505_RS12215 0.78 -0.3
51,524 - PagCFBP13505_RS12215 0.78 -1.1
51,524 - PagCFBP13505_RS12215 0.78 -0.2
51,589 + PagCFBP13505_RS12215 0.84 +0.4
51,589 + PagCFBP13505_RS12215 0.84 +0.1
51,589 + PagCFBP13505_RS12215 0.84 +0.1
51,590 - PagCFBP13505_RS12215 0.84 -0.5
51,590 - PagCFBP13505_RS12215 0.84 -2.6
51,590 - PagCFBP13505_RS12215 0.84 +0.6
51,590 - PagCFBP13505_RS12215 0.84 -0.7
51,592 + PagCFBP13505_RS12215 0.84 +0.3
51,592 + PagCFBP13505_RS12215 0.84 +0.9
51,592 + PagCFBP13505_RS12215 0.84 -0.9
51,592 + PagCFBP13505_RS12215 0.84 +0.5
51,592 + PagCFBP13505_RS12215 0.84 +0.2
51,592 + PagCFBP13505_RS12215 0.84 +0.5
51,592 + PagCFBP13505_RS12215 0.84 -0.8
51,592 + PagCFBP13505_RS12215 0.84 -0.0
51,593 - PagCFBP13505_RS12215 0.84 +1.0
51,593 - PagCFBP13505_RS12215 0.84 +0.0
51,593 - PagCFBP13505_RS12215 0.84 +0.1
51,593 - PagCFBP13505_RS12215 0.84 +0.2
51,593 - PagCFBP13505_RS12215 0.84 -0.9
51,593 - PagCFBP13505_RS12215 0.84 +0.8
51,593 - PagCFBP13505_RS12215 0.84 +0.0
51,612 + PagCFBP13505_RS12215 0.86 -1.2
51,656 + +0.8
51,656 + -0.5
51,657 - -0.4
51,795 + +0.1
51,795 + +0.0
51,822 + -0.5
51,823 - +0.3
51,888 + +0.7
51,888 + -0.3
51,888 + -0.1
51,889 - +0.7
51,893 + -0.2
51,894 - -0.2
51,937 + +0.3
51,938 - -0.5
52,027 - PagCFBP13505_RS12220 0.25 -0.6
52,027 - PagCFBP13505_RS12220 0.25 -0.6
52,027 - PagCFBP13505_RS12220 0.25 +0.9
52,027 - PagCFBP13505_RS12220 0.25 -0.1
52,041 - PagCFBP13505_RS12220 0.27 -1.4
52,096 - PagCFBP13505_RS12220 0.38 -0.4
52,096 - PagCFBP13505_RS12220 0.38 +0.5
52,152 - PagCFBP13505_RS12220 0.48 -2.4
52,152 - PagCFBP13505_RS12220 0.48 -1.2
52,170 - PagCFBP13505_RS12220 0.51 -0.3
52,188 + PagCFBP13505_RS12220 0.55 +0.4
52,189 - PagCFBP13505_RS12220 0.55 +0.0
52,189 - PagCFBP13505_RS12220 0.55 -1.2
52,197 + PagCFBP13505_RS12220 0.56 -0.4
52,209 - PagCFBP13505_RS12220 0.59 -2.3
52,232 + PagCFBP13505_RS12220 0.63 -0.5
52,239 + PagCFBP13505_RS12220 0.64 +0.2
52,239 + PagCFBP13505_RS12220 0.64 +0.1
52,243 - PagCFBP13505_RS12220 0.65 -1.2
52,277 + PagCFBP13505_RS12220 0.71 -0.1
52,346 - PagCFBP13505_RS12220 0.84 -0.0
52,386 + +0.8
52,386 + -0.8
52,515 + +0.2
52,515 + -0.1
52,515 + +0.3
52,516 - +0.2
52,516 - +0.4
52,672 + PagCFBP13505_RS12225 0.41 -0.0
52,728 - PagCFBP13505_RS12225 0.52 -0.9
52,728 - PagCFBP13505_RS12225 0.52 +0.7
52,728 - PagCFBP13505_RS12225 0.52 -0.3
52,769 + PagCFBP13505_RS12225 0.60 +0.5
52,769 + PagCFBP13505_RS12225 0.60 -0.3
52,770 - PagCFBP13505_RS12225 0.60 +1.3
52,770 - PagCFBP13505_RS12225 0.60 +0.4
52,770 - PagCFBP13505_RS12225 0.60 +0.1
52,770 - PagCFBP13505_RS12225 0.60 -0.5
52,805 + PagCFBP13505_RS12225 0.67 +0.6
52,806 - PagCFBP13505_RS12225 0.68 -0.2
52,824 + PagCFBP13505_RS12225 0.71 +0.5
52,824 + PagCFBP13505_RS12225 0.71 -0.2
52,824 + PagCFBP13505_RS12225 0.71 +1.3
52,825 - PagCFBP13505_RS12225 0.71 +0.6
52,886 + PagCFBP13505_RS12225 0.84 -0.2
52,887 - PagCFBP13505_RS12225 0.84 -1.8
52,982 - +0.1
53,106 + PagCFBP13505_RS12230 0.18 +1.4
53,116 + PagCFBP13505_RS12230 0.19 +0.9
53,116 + PagCFBP13505_RS12230 0.19 -1.5
53,117 - PagCFBP13505_RS12230 0.19 +0.2
53,277 + PagCFBP13505_RS12230 0.40 +0.7
53,278 - PagCFBP13505_RS12230 0.40 -1.0
53,342 - PagCFBP13505_RS12230 0.48 -0.2
53,363 + PagCFBP13505_RS12230 0.50 -0.8
53,365 + PagCFBP13505_RS12230 0.51 +1.7
53,365 + PagCFBP13505_RS12230 0.51 -1.1
53,375 + PagCFBP13505_RS12230 0.52 +1.2
53,375 + PagCFBP13505_RS12230 0.52 -0.1
53,441 - PagCFBP13505_RS12230 0.60 +0.4
53,441 - PagCFBP13505_RS12230 0.60 +0.3
53,570 + PagCFBP13505_RS12230 0.77 +0.1
53,591 - PagCFBP13505_RS12230 0.79 +0.2
53,682 - +0.2
53,682 - -0.7
53,777 + +0.2
53,786 - +0.0
53,900 - PagCFBP13505_RS12235 0.20 +0.4
53,900 - PagCFBP13505_RS12235 0.20 +0.8

Or see this region's nucleotide sequence