Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS02170

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS02160 and PagCFBP13505_RS02165 overlap by 4 nucleotidesPagCFBP13505_RS02165 and PagCFBP13505_RS02170 are separated by 133 nucleotidesPagCFBP13505_RS02170 and PagCFBP13505_RS02175 overlap by 4 nucleotidesPagCFBP13505_RS02175 and PagCFBP13505_RS02180 are separated by 5 nucleotides PagCFBP13505_RS02160: PagCFBP13505_RS02160 - flagellar transcriptional regulator FlhD, at 498,081 to 498,434 _RS02160 PagCFBP13505_RS02165: PagCFBP13505_RS02165 - flagellar transcriptional regulator FlhC, at 498,431 to 499,009 _RS02165 PagCFBP13505_RS02170: PagCFBP13505_RS02170 - flagellar motor stator protein MotA, at 499,143 to 500,030 _RS02170 PagCFBP13505_RS02175: PagCFBP13505_RS02175 - flagellar motor protein MotB, at 500,027 to 500,968 _RS02175 PagCFBP13505_RS02180: PagCFBP13505_RS02180 - chemotaxis protein CheA, at 500,974 to 502,962 _RS02180 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 498.151 kb on + strand, within PagCFBP13505_RS02160at 498.226 kb on + strand, within PagCFBP13505_RS02160at 498.226 kb on + strand, within PagCFBP13505_RS02160at 498.227 kb on - strand, within PagCFBP13505_RS02160at 498.495 kb on + strand, within PagCFBP13505_RS02165at 498.496 kb on - strand, within PagCFBP13505_RS02165at 498.507 kb on + strand, within PagCFBP13505_RS02165at 498.560 kb on + strand, within PagCFBP13505_RS02165at 498.560 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.652 kb on + strand, within PagCFBP13505_RS02165at 498.653 kb on - strand, within PagCFBP13505_RS02165at 498.653 kb on - strand, within PagCFBP13505_RS02165at 498.653 kb on - strand, within PagCFBP13505_RS02165at 498.653 kb on - strand, within PagCFBP13505_RS02165at 498.662 kb on - strand, within PagCFBP13505_RS02165at 498.725 kb on + strand, within PagCFBP13505_RS02165at 498.734 kb on + strand, within PagCFBP13505_RS02165at 498.842 kb on - strand, within PagCFBP13505_RS02165at 498.862 kb on + strand, within PagCFBP13505_RS02165at 498.866 kb on - strand, within PagCFBP13505_RS02165at 498.866 kb on - strand, within PagCFBP13505_RS02165at 498.896 kb on - strand, within PagCFBP13505_RS02165at 498.931 kb on - strand, within PagCFBP13505_RS02165at 498.964 kb on + strandat 498.965 kb on - strandat 499.049 kb on - strandat 499.083 kb on - strandat 499.130 kb on + strandat 499.157 kb on - strandat 499.247 kb on - strand, within PagCFBP13505_RS02170at 499.365 kb on + strand, within PagCFBP13505_RS02170at 499.365 kb on + strand, within PagCFBP13505_RS02170at 499.366 kb on - strand, within PagCFBP13505_RS02170at 499.479 kb on + strand, within PagCFBP13505_RS02170at 499.499 kb on + strand, within PagCFBP13505_RS02170at 499.520 kb on + strand, within PagCFBP13505_RS02170at 499.527 kb on + strand, within PagCFBP13505_RS02170at 499.527 kb on + strand, within PagCFBP13505_RS02170at 499.602 kb on + strand, within PagCFBP13505_RS02170at 499.634 kb on + strand, within PagCFBP13505_RS02170at 499.635 kb on - strand, within PagCFBP13505_RS02170at 499.635 kb on - strand, within PagCFBP13505_RS02170at 499.866 kb on - strand, within PagCFBP13505_RS02170at 499.866 kb on - strand, within PagCFBP13505_RS02170at 499.938 kb on + strand, within PagCFBP13505_RS02170at 499.981 kb on + strandat 499.981 kb on + strandat 499.981 kb on + strandat 499.981 kb on + strandat 499.982 kb on - strandat 500.074 kb on + strandat 500.114 kb on + strandat 500.126 kb on - strand, within PagCFBP13505_RS02175at 500.150 kb on - strand, within PagCFBP13505_RS02175at 500.237 kb on - strand, within PagCFBP13505_RS02175at 500.537 kb on + strand, within PagCFBP13505_RS02175at 500.537 kb on + strand, within PagCFBP13505_RS02175at 500.537 kb on + strand, within PagCFBP13505_RS02175at 500.538 kb on - strand, within PagCFBP13505_RS02175at 500.538 kb on - strand, within PagCFBP13505_RS02175at 500.539 kb on + strand, within PagCFBP13505_RS02175at 500.539 kb on + strand, within PagCFBP13505_RS02175at 500.540 kb on - strand, within PagCFBP13505_RS02175at 500.548 kb on + strand, within PagCFBP13505_RS02175at 500.627 kb on + strand, within PagCFBP13505_RS02175at 500.627 kb on + strand, within PagCFBP13505_RS02175at 501.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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498,151 + PagCFBP13505_RS02160 0.20 +0.9
498,226 + PagCFBP13505_RS02160 0.41 +1.2
498,226 + PagCFBP13505_RS02160 0.41 +1.1
498,227 - PagCFBP13505_RS02160 0.41 +2.1
498,495 + PagCFBP13505_RS02165 0.11 +0.7
498,496 - PagCFBP13505_RS02165 0.11 -0.3
498,507 + PagCFBP13505_RS02165 0.13 +1.0
498,560 + PagCFBP13505_RS02165 0.22 +1.6
498,560 + PagCFBP13505_RS02165 0.22 +0.6
498,652 + PagCFBP13505_RS02165 0.38 +1.1
498,652 + PagCFBP13505_RS02165 0.38 +1.0
498,652 + PagCFBP13505_RS02165 0.38 +1.2
498,652 + PagCFBP13505_RS02165 0.38 +1.1
498,652 + PagCFBP13505_RS02165 0.38 +2.0
498,652 + PagCFBP13505_RS02165 0.38 +1.1
498,653 - PagCFBP13505_RS02165 0.38 -1.6
498,653 - PagCFBP13505_RS02165 0.38 +0.4
498,653 - PagCFBP13505_RS02165 0.38 +1.0
498,653 - PagCFBP13505_RS02165 0.38 +1.0
498,662 - PagCFBP13505_RS02165 0.40 +1.2
498,725 + PagCFBP13505_RS02165 0.51 -0.8
498,734 + PagCFBP13505_RS02165 0.52 -1.2
498,842 - PagCFBP13505_RS02165 0.71 +2.2
498,862 + PagCFBP13505_RS02165 0.74 +1.6
498,866 - PagCFBP13505_RS02165 0.75 +0.2
498,866 - PagCFBP13505_RS02165 0.75 +1.2
498,896 - PagCFBP13505_RS02165 0.80 +0.6
498,931 - PagCFBP13505_RS02165 0.86 +0.8
498,964 + -2.1
498,965 - +0.7
499,049 - +0.4
499,083 - +1.6
499,130 + +0.5
499,157 - -0.5
499,247 - PagCFBP13505_RS02170 0.12 +0.6
499,365 + PagCFBP13505_RS02170 0.25 +0.2
499,365 + PagCFBP13505_RS02170 0.25 -1.9
499,366 - PagCFBP13505_RS02170 0.25 -0.0
499,479 + PagCFBP13505_RS02170 0.38 -0.4
499,499 + PagCFBP13505_RS02170 0.40 +0.7
499,520 + PagCFBP13505_RS02170 0.42 +0.8
499,527 + PagCFBP13505_RS02170 0.43 +1.3
499,527 + PagCFBP13505_RS02170 0.43 +0.4
499,602 + PagCFBP13505_RS02170 0.52 +0.8
499,634 + PagCFBP13505_RS02170 0.55 +0.5
499,635 - PagCFBP13505_RS02170 0.55 +0.9
499,635 - PagCFBP13505_RS02170 0.55 +0.7
499,866 - PagCFBP13505_RS02170 0.81 +0.9
499,866 - PagCFBP13505_RS02170 0.81 -0.0
499,938 + PagCFBP13505_RS02170 0.90 +0.1
499,981 + +0.3
499,981 + +0.5
499,981 + +0.6
499,981 + +0.0
499,982 - -0.3
500,074 + +0.8
500,114 + +1.0
500,126 - PagCFBP13505_RS02175 0.11 -0.7
500,150 - PagCFBP13505_RS02175 0.13 +0.5
500,237 - PagCFBP13505_RS02175 0.22 +0.4
500,537 + PagCFBP13505_RS02175 0.54 +1.0
500,537 + PagCFBP13505_RS02175 0.54 -0.6
500,537 + PagCFBP13505_RS02175 0.54 +0.0
500,538 - PagCFBP13505_RS02175 0.54 +0.9
500,538 - PagCFBP13505_RS02175 0.54 +0.2
500,539 + PagCFBP13505_RS02175 0.54 +1.7
500,539 + PagCFBP13505_RS02175 0.54 +0.1
500,540 - PagCFBP13505_RS02175 0.54 +0.5
500,548 + PagCFBP13505_RS02175 0.55 +2.7
500,627 + PagCFBP13505_RS02175 0.64 +0.4
500,627 + PagCFBP13505_RS02175 0.64 +0.2
501,030 - -0.5

Or see this region's nucleotide sequence