Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS21010

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS21005 and PagCFBP13505_RS21010 are separated by 22 nucleotidesPagCFBP13505_RS21010 and PagCFBP13505_RS21015 are separated by 228 nucleotides PagCFBP13505_RS21005: PagCFBP13505_RS21005 - AraC family transcriptional regulator, at 3,141 to 4,106 _RS21005 PagCFBP13505_RS21010: PagCFBP13505_RS21010 - PAS domain-containing methyl-accepting chemotaxis protein, at 4,129 to 5,673 _RS21010 PagCFBP13505_RS21015: PagCFBP13505_RS21015 - PTS N-acetylmuramic acid transporter subunit IIBC, at 5,902 to 7,356 _RS21015 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.172 kb on + strandat 3.172 kb on + strandat 3.172 kb on + strandat 3.193 kb on - strandat 3.204 kb on + strandat 3.205 kb on - strandat 3.205 kb on - strandat 3.244 kb on - strand, within PagCFBP13505_RS21005at 3.365 kb on + strand, within PagCFBP13505_RS21005at 3.366 kb on - strand, within PagCFBP13505_RS21005at 3.410 kb on + strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.414 kb on - strand, within PagCFBP13505_RS21005at 3.414 kb on - strand, within PagCFBP13505_RS21005at 3.459 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.582 kb on - strand, within PagCFBP13505_RS21005at 3.598 kb on - strand, within PagCFBP13505_RS21005at 3.915 kb on + strand, within PagCFBP13505_RS21005at 3.990 kb on + strand, within PagCFBP13505_RS21005at 3.990 kb on + strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 4.003 kb on - strand, within PagCFBP13505_RS21005at 4.118 kb on - strandat 4.180 kb on - strandat 4.233 kb on + strandat 4.233 kb on + strandat 4.234 kb on - strandat 4.348 kb on - strand, within PagCFBP13505_RS21010at 4.468 kb on - strand, within PagCFBP13505_RS21010at 4.549 kb on + strand, within PagCFBP13505_RS21010at 4.549 kb on + strand, within PagCFBP13505_RS21010at 4.550 kb on - strand, within PagCFBP13505_RS21010at 4.550 kb on - strand, within PagCFBP13505_RS21010at 4.551 kb on + strand, within PagCFBP13505_RS21010at 4.587 kb on + strand, within PagCFBP13505_RS21010at 4.590 kb on + strand, within PagCFBP13505_RS21010at 5.016 kb on + strand, within PagCFBP13505_RS21010at 5.286 kb on - strand, within PagCFBP13505_RS21010at 5.286 kb on - strand, within PagCFBP13505_RS21010at 5.286 kb on - strand, within PagCFBP13505_RS21010at 5.286 kb on - strand, within PagCFBP13505_RS21010at 5.342 kb on + strand, within PagCFBP13505_RS21010at 5.342 kb on + strand, within PagCFBP13505_RS21010at 5.342 kb on + strand, within PagCFBP13505_RS21010at 5.343 kb on - strand, within PagCFBP13505_RS21010at 5.343 kb on - strand, within PagCFBP13505_RS21010at 5.343 kb on - strand, within PagCFBP13505_RS21010at 5.343 kb on - strand, within PagCFBP13505_RS21010at 5.579 kb on + strandat 5.579 kb on + strandat 5.580 kb on - strandat 5.580 kb on - strandat 5.580 kb on - strandat 5.580 kb on - strandat 5.595 kb on + strandat 5.596 kb on - strandat 5.596 kb on - strandat 5.596 kb on - strandat 5.625 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.640 kb on - strandat 5.668 kb on - strandat 5.748 kb on - strandat 5.806 kb on + strandat 5.812 kb on - strandat 5.823 kb on + strandat 5.823 kb on + strandat 5.940 kb on + strandat 5.941 kb on - strandat 5.941 kb on - strandat 5.984 kb on + strandat 5.984 kb on + strandat 5.985 kb on - strandat 6.144 kb on + strand, within PagCFBP13505_RS21015at 6.145 kb on - strand, within PagCFBP13505_RS21015at 6.176 kb on + strand, within PagCFBP13505_RS21015at 6.177 kb on - strand, within PagCFBP13505_RS21015at 6.359 kb on + strand, within PagCFBP13505_RS21015at 6.360 kb on - strand, within PagCFBP13505_RS21015at 6.360 kb on - strand, within PagCFBP13505_RS21015at 6.369 kb on + strand, within PagCFBP13505_RS21015at 6.369 kb on + strand, within PagCFBP13505_RS21015at 6.445 kb on - strand, within PagCFBP13505_RS21015at 6.457 kb on - strand, within PagCFBP13505_RS21015at 6.478 kb on - strand, within PagCFBP13505_RS21015at 6.512 kb on + strand, within PagCFBP13505_RS21015at 6.512 kb on + strand, within PagCFBP13505_RS21015at 6.512 kb on + strand, within PagCFBP13505_RS21015at 6.512 kb on + strand, within PagCFBP13505_RS21015at 6.512 kb on + strand, within PagCFBP13505_RS21015at 6.513 kb on - strand, within PagCFBP13505_RS21015at 6.561 kb on + strand, within PagCFBP13505_RS21015at 6.561 kb on + strand, within PagCFBP13505_RS21015at 6.561 kb on + strand, within PagCFBP13505_RS21015at 6.562 kb on - strand, within PagCFBP13505_RS21015at 6.640 kb on - strand, within PagCFBP13505_RS21015

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,172 + +1.1
3,172 + +0.7
3,172 + +0.1
3,193 - -0.6
3,204 + +0.0
3,205 - +0.1
3,205 - +0.7
3,244 - PagCFBP13505_RS21005 0.11 -0.4
3,365 + PagCFBP13505_RS21005 0.23 -0.3
3,366 - PagCFBP13505_RS21005 0.23 +0.2
3,410 + PagCFBP13505_RS21005 0.28 +0.5
3,411 - PagCFBP13505_RS21005 0.28 +0.5
3,411 - PagCFBP13505_RS21005 0.28 -0.1
3,411 - PagCFBP13505_RS21005 0.28 -0.0
3,414 - PagCFBP13505_RS21005 0.28 +0.1
3,414 - PagCFBP13505_RS21005 0.28 -0.5
3,459 - PagCFBP13505_RS21005 0.33 +0.2
3,578 - PagCFBP13505_RS21005 0.45 +0.3
3,578 - PagCFBP13505_RS21005 0.45 +0.3
3,578 - PagCFBP13505_RS21005 0.45 +1.0
3,582 - PagCFBP13505_RS21005 0.46 -0.3
3,598 - PagCFBP13505_RS21005 0.47 +0.6
3,915 + PagCFBP13505_RS21005 0.80 +0.5
3,990 + PagCFBP13505_RS21005 0.88 +0.8
3,990 + PagCFBP13505_RS21005 0.88 +0.2
3,991 - PagCFBP13505_RS21005 0.88 -0.7
3,991 - PagCFBP13505_RS21005 0.88 -0.2
3,991 - PagCFBP13505_RS21005 0.88 -2.1
4,003 - PagCFBP13505_RS21005 0.89 -0.9
4,118 - +0.8
4,180 - -0.7
4,233 + -0.0
4,233 + -1.1
4,234 - +0.5
4,348 - PagCFBP13505_RS21010 0.14 +0.1
4,468 - PagCFBP13505_RS21010 0.22 -1.7
4,549 + PagCFBP13505_RS21010 0.27 -0.2
4,549 + PagCFBP13505_RS21010 0.27 -0.1
4,550 - PagCFBP13505_RS21010 0.27 -0.2
4,550 - PagCFBP13505_RS21010 0.27 -0.7
4,551 + PagCFBP13505_RS21010 0.27 +0.5
4,587 + PagCFBP13505_RS21010 0.30 +0.4
4,590 + PagCFBP13505_RS21010 0.30 +0.2
5,016 + PagCFBP13505_RS21010 0.57 -0.0
5,286 - PagCFBP13505_RS21010 0.75 +0.6
5,286 - PagCFBP13505_RS21010 0.75 -1.2
5,286 - PagCFBP13505_RS21010 0.75 +0.3
5,286 - PagCFBP13505_RS21010 0.75 -0.1
5,342 + PagCFBP13505_RS21010 0.79 +0.2
5,342 + PagCFBP13505_RS21010 0.79 +0.2
5,342 + PagCFBP13505_RS21010 0.79 +0.4
5,343 - PagCFBP13505_RS21010 0.79 +0.8
5,343 - PagCFBP13505_RS21010 0.79 +0.6
5,343 - PagCFBP13505_RS21010 0.79 -0.8
5,343 - PagCFBP13505_RS21010 0.79 -0.2
5,579 + +0.1
5,579 + +0.3
5,580 - -0.8
5,580 - -0.1
5,580 - +0.6
5,580 - -0.1
5,595 + -0.4
5,596 - -0.4
5,596 - +0.5
5,596 - -0.1
5,625 + -0.8
5,639 + +0.4
5,639 + +0.2
5,639 + +0.2
5,640 - +0.1
5,668 - -0.3
5,748 - -0.6
5,806 + +0.1
5,812 - +0.2
5,823 + +0.6
5,823 + +1.5
5,940 + +0.1
5,941 - +0.3
5,941 - +1.2
5,984 + -0.5
5,984 + +0.5
5,985 - +0.6
6,144 + PagCFBP13505_RS21015 0.17 +0.3
6,145 - PagCFBP13505_RS21015 0.17 +0.6
6,176 + PagCFBP13505_RS21015 0.19 -0.7
6,177 - PagCFBP13505_RS21015 0.19 +0.2
6,359 + PagCFBP13505_RS21015 0.31 -1.5
6,360 - PagCFBP13505_RS21015 0.31 +0.0
6,360 - PagCFBP13505_RS21015 0.31 +0.5
6,369 + PagCFBP13505_RS21015 0.32 +0.9
6,369 + PagCFBP13505_RS21015 0.32 -0.3
6,445 - PagCFBP13505_RS21015 0.37 -0.8
6,457 - PagCFBP13505_RS21015 0.38 +0.4
6,478 - PagCFBP13505_RS21015 0.40 +0.4
6,512 + PagCFBP13505_RS21015 0.42 +0.6
6,512 + PagCFBP13505_RS21015 0.42 +1.0
6,512 + PagCFBP13505_RS21015 0.42 +0.2
6,512 + PagCFBP13505_RS21015 0.42 +0.6
6,512 + PagCFBP13505_RS21015 0.42 -0.3
6,513 - PagCFBP13505_RS21015 0.42 +0.3
6,561 + PagCFBP13505_RS21015 0.45 +0.1
6,561 + PagCFBP13505_RS21015 0.45 -0.7
6,561 + PagCFBP13505_RS21015 0.45 -0.5
6,562 - PagCFBP13505_RS21015 0.45 -1.0
6,640 - PagCFBP13505_RS21015 0.51 +0.0

Or see this region's nucleotide sequence