Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS05215

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS05210 and PagCFBP13505_RS05215 are separated by 123 nucleotidesPagCFBP13505_RS05215 and PagCFBP13505_RS05220 are separated by 14 nucleotides PagCFBP13505_RS05210: PagCFBP13505_RS05210 - flagellar assembly peptidoglycan hydrolase FlgJ, at 450,045 to 451,007 _RS05210 PagCFBP13505_RS05215: PagCFBP13505_RS05215 - flagellar hook-associated protein FlgK, at 451,131 to 452,780 _RS05215 PagCFBP13505_RS05220: PagCFBP13505_RS05220 - flagellar hook-filament junction protein FlgL, at 452,795 to 453,760 _RS05220 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.176 kb on - strand, within PagCFBP13505_RS05210at 450.176 kb on - strand, within PagCFBP13505_RS05210at 450.251 kb on + strand, within PagCFBP13505_RS05210at 450.252 kb on - strand, within PagCFBP13505_RS05210at 450.252 kb on - strand, within PagCFBP13505_RS05210at 450.252 kb on - strand, within PagCFBP13505_RS05210at 450.257 kb on + strand, within PagCFBP13505_RS05210at 450.257 kb on + strand, within PagCFBP13505_RS05210at 450.257 kb on + strand, within PagCFBP13505_RS05210at 450.258 kb on - strand, within PagCFBP13505_RS05210at 450.258 kb on - strand, within PagCFBP13505_RS05210at 450.258 kb on - strand, within PagCFBP13505_RS05210at 450.261 kb on + strand, within PagCFBP13505_RS05210at 450.261 kb on + strand, within PagCFBP13505_RS05210at 450.261 kb on + strand, within PagCFBP13505_RS05210at 450.261 kb on + strand, within PagCFBP13505_RS05210at 450.262 kb on - strand, within PagCFBP13505_RS05210at 450.365 kb on + strand, within PagCFBP13505_RS05210at 450.395 kb on + strand, within PagCFBP13505_RS05210at 450.395 kb on + strand, within PagCFBP13505_RS05210at 450.657 kb on + strand, within PagCFBP13505_RS05210at 450.658 kb on - strand, within PagCFBP13505_RS05210at 450.658 kb on - strand, within PagCFBP13505_RS05210at 450.658 kb on - strand, within PagCFBP13505_RS05210at 450.771 kb on + strand, within PagCFBP13505_RS05210at 450.774 kb on - strand, within PagCFBP13505_RS05210at 450.781 kb on - strand, within PagCFBP13505_RS05210at 450.801 kb on + strand, within PagCFBP13505_RS05210at 450.831 kb on + strand, within PagCFBP13505_RS05210at 450.832 kb on - strand, within PagCFBP13505_RS05210at 450.913 kb on - strandat 450.913 kb on - strandat 450.954 kb on - strandat 450.978 kb on + strandat 451.031 kb on + strandat 451.120 kb on - strandat 451.141 kb on + strandat 451.141 kb on + strandat 451.145 kb on + strandat 451.146 kb on - strandat 451.146 kb on - strandat 451.199 kb on + strandat 451.216 kb on - strandat 451.269 kb on - strandat 451.283 kb on + strandat 451.283 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.287 kb on + strandat 451.288 kb on - strandat 451.288 kb on - strandat 451.288 kb on - strandat 451.288 kb on - strandat 451.307 kb on + strand, within PagCFBP13505_RS05215at 451.318 kb on + strand, within PagCFBP13505_RS05215at 451.330 kb on - strand, within PagCFBP13505_RS05215at 451.340 kb on + strand, within PagCFBP13505_RS05215at 451.347 kb on - strand, within PagCFBP13505_RS05215at 451.375 kb on - strand, within PagCFBP13505_RS05215at 451.385 kb on - strand, within PagCFBP13505_RS05215at 451.409 kb on + strand, within PagCFBP13505_RS05215at 451.472 kb on + strand, within PagCFBP13505_RS05215at 451.579 kb on - strand, within PagCFBP13505_RS05215at 451.587 kb on - strand, within PagCFBP13505_RS05215at 451.641 kb on - strand, within PagCFBP13505_RS05215at 451.712 kb on + strand, within PagCFBP13505_RS05215at 451.712 kb on + strand, within PagCFBP13505_RS05215at 451.712 kb on + strand, within PagCFBP13505_RS05215at 451.712 kb on + strand, within PagCFBP13505_RS05215at 451.713 kb on - strand, within PagCFBP13505_RS05215at 451.798 kb on - strand, within PagCFBP13505_RS05215at 451.985 kb on + strand, within PagCFBP13505_RS05215at 452.078 kb on + strand, within PagCFBP13505_RS05215at 452.111 kb on + strand, within PagCFBP13505_RS05215at 452.183 kb on + strand, within PagCFBP13505_RS05215at 452.209 kb on - strand, within PagCFBP13505_RS05215at 452.221 kb on - strand, within PagCFBP13505_RS05215at 452.221 kb on - strand, within PagCFBP13505_RS05215at 452.232 kb on - strand, within PagCFBP13505_RS05215at 452.261 kb on + strand, within PagCFBP13505_RS05215at 452.262 kb on - strand, within PagCFBP13505_RS05215at 452.286 kb on - strand, within PagCFBP13505_RS05215at 452.408 kb on + strand, within PagCFBP13505_RS05215at 452.458 kb on + strand, within PagCFBP13505_RS05215at 452.458 kb on + strand, within PagCFBP13505_RS05215at 452.459 kb on - strand, within PagCFBP13505_RS05215at 452.480 kb on + strand, within PagCFBP13505_RS05215at 452.568 kb on - strand, within PagCFBP13505_RS05215at 452.576 kb on + strand, within PagCFBP13505_RS05215at 452.600 kb on + strand, within PagCFBP13505_RS05215at 452.709 kb on + strandat 452.709 kb on + strandat 452.709 kb on + strandat 452.712 kb on + strandat 452.712 kb on + strandat 452.712 kb on + strandat 452.712 kb on + strandat 452.712 kb on + strandat 452.713 kb on - strandat 452.713 kb on - strandat 452.713 kb on - strandat 452.792 kb on - strandat 452.905 kb on + strand, within PagCFBP13505_RS05220at 452.978 kb on + strand, within PagCFBP13505_RS05220at 453.028 kb on + strand, within PagCFBP13505_RS05220at 453.029 kb on - strand, within PagCFBP13505_RS05220at 453.127 kb on + strand, within PagCFBP13505_RS05220at 453.235 kb on - strand, within PagCFBP13505_RS05220at 453.307 kb on + strand, within PagCFBP13505_RS05220at 453.337 kb on + strand, within PagCFBP13505_RS05220at 453.338 kb on - strand, within PagCFBP13505_RS05220at 453.338 kb on - strand, within PagCFBP13505_RS05220at 453.338 kb on - strand, within PagCFBP13505_RS05220at 453.406 kb on + strand, within PagCFBP13505_RS05220at 453.406 kb on + strand, within PagCFBP13505_RS05220at 453.407 kb on - strand, within PagCFBP13505_RS05220at 453.497 kb on - strand, within PagCFBP13505_RS05220at 453.497 kb on - strand, within PagCFBP13505_RS05220at 453.529 kb on + strand, within PagCFBP13505_RS05220at 453.538 kb on - strand, within PagCFBP13505_RS05220at 453.670 kb on + strandat 453.674 kb on + strandat 453.674 kb on + strandat 453.674 kb on + strandat 453.675 kb on - strandat 453.707 kb on + strandat 453.707 kb on + strandat 453.708 kb on - strandat 453.708 kb on - strandat 453.709 kb on + strandat 453.730 kb on + strandat 453.730 kb on + strandat 453.730 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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450,176 - PagCFBP13505_RS05210 0.14 -0.3
450,176 - PagCFBP13505_RS05210 0.14 +0.4
450,251 + PagCFBP13505_RS05210 0.21 +1.2
450,252 - PagCFBP13505_RS05210 0.21 +0.8
450,252 - PagCFBP13505_RS05210 0.21 +0.7
450,252 - PagCFBP13505_RS05210 0.21 +0.5
450,257 + PagCFBP13505_RS05210 0.22 +0.7
450,257 + PagCFBP13505_RS05210 0.22 +1.2
450,257 + PagCFBP13505_RS05210 0.22 -2.6
450,258 - PagCFBP13505_RS05210 0.22 +0.3
450,258 - PagCFBP13505_RS05210 0.22 +1.8
450,258 - PagCFBP13505_RS05210 0.22 -0.6
450,261 + PagCFBP13505_RS05210 0.22 -0.1
450,261 + PagCFBP13505_RS05210 0.22 +1.0
450,261 + PagCFBP13505_RS05210 0.22 +0.5
450,261 + PagCFBP13505_RS05210 0.22 +0.9
450,262 - PagCFBP13505_RS05210 0.23 +1.0
450,365 + PagCFBP13505_RS05210 0.33 +1.1
450,395 + PagCFBP13505_RS05210 0.36 +0.7
450,395 + PagCFBP13505_RS05210 0.36 +2.3
450,657 + PagCFBP13505_RS05210 0.64 +0.7
450,658 - PagCFBP13505_RS05210 0.64 +0.8
450,658 - PagCFBP13505_RS05210 0.64 -2.8
450,658 - PagCFBP13505_RS05210 0.64 -1.4
450,771 + PagCFBP13505_RS05210 0.75 +0.4
450,774 - PagCFBP13505_RS05210 0.76 +0.7
450,781 - PagCFBP13505_RS05210 0.76 +0.5
450,801 + PagCFBP13505_RS05210 0.79 -0.7
450,831 + PagCFBP13505_RS05210 0.82 -0.8
450,832 - PagCFBP13505_RS05210 0.82 -0.7
450,913 - +0.7
450,913 - +0.0
450,954 - -0.0
450,978 + +0.8
451,031 + +0.2
451,120 - -0.3
451,141 + +0.5
451,141 + -0.3
451,145 + -0.6
451,146 - +0.9
451,146 - -0.2
451,199 + +0.4
451,216 - +0.4
451,269 - +0.2
451,283 + -0.2
451,283 + +1.1
451,287 + -0.6
451,287 + -3.0
451,287 + -0.0
451,287 + +0.2
451,287 + +0.7
451,287 + +0.8
451,287 + +0.4
451,288 - -1.2
451,288 - -0.8
451,288 - -0.3
451,288 - +0.7
451,307 + PagCFBP13505_RS05215 0.11 -0.7
451,318 + PagCFBP13505_RS05215 0.11 +0.1
451,330 - PagCFBP13505_RS05215 0.12 -0.9
451,340 + PagCFBP13505_RS05215 0.13 -0.4
451,347 - PagCFBP13505_RS05215 0.13 +0.6
451,375 - PagCFBP13505_RS05215 0.15 -0.5
451,385 - PagCFBP13505_RS05215 0.15 -0.6
451,409 + PagCFBP13505_RS05215 0.17 -0.1
451,472 + PagCFBP13505_RS05215 0.21 +0.2
451,579 - PagCFBP13505_RS05215 0.27 -2.4
451,587 - PagCFBP13505_RS05215 0.28 -0.4
451,641 - PagCFBP13505_RS05215 0.31 +0.1
451,712 + PagCFBP13505_RS05215 0.35 +1.0
451,712 + PagCFBP13505_RS05215 0.35 -0.2
451,712 + PagCFBP13505_RS05215 0.35 -1.1
451,712 + PagCFBP13505_RS05215 0.35 +0.4
451,713 - PagCFBP13505_RS05215 0.35 -0.5
451,798 - PagCFBP13505_RS05215 0.40 +0.4
451,985 + PagCFBP13505_RS05215 0.52 +0.5
452,078 + PagCFBP13505_RS05215 0.57 -0.4
452,111 + PagCFBP13505_RS05215 0.59 -0.3
452,183 + PagCFBP13505_RS05215 0.64 +1.1
452,209 - PagCFBP13505_RS05215 0.65 +0.2
452,221 - PagCFBP13505_RS05215 0.66 +1.0
452,221 - PagCFBP13505_RS05215 0.66 -0.1
452,232 - PagCFBP13505_RS05215 0.67 +0.5
452,261 + PagCFBP13505_RS05215 0.68 -1.0
452,262 - PagCFBP13505_RS05215 0.69 -2.2
452,286 - PagCFBP13505_RS05215 0.70 -1.8
452,408 + PagCFBP13505_RS05215 0.77 -0.2
452,458 + PagCFBP13505_RS05215 0.80 +0.4
452,458 + PagCFBP13505_RS05215 0.80 -0.4
452,459 - PagCFBP13505_RS05215 0.80 +0.8
452,480 + PagCFBP13505_RS05215 0.82 -0.0
452,568 - PagCFBP13505_RS05215 0.87 +0.2
452,576 + PagCFBP13505_RS05215 0.88 -2.6
452,600 + PagCFBP13505_RS05215 0.89 +0.4
452,709 + -0.6
452,709 + -0.6
452,709 + -0.3
452,712 + +0.8
452,712 + -0.1
452,712 + +0.2
452,712 + +0.9
452,712 + -1.6
452,713 - -1.9
452,713 - -0.6
452,713 - +0.8
452,792 - -0.8
452,905 + PagCFBP13505_RS05220 0.11 -0.3
452,978 + PagCFBP13505_RS05220 0.19 -0.4
453,028 + PagCFBP13505_RS05220 0.24 -0.6
453,029 - PagCFBP13505_RS05220 0.24 -0.0
453,127 + PagCFBP13505_RS05220 0.34 +0.4
453,235 - PagCFBP13505_RS05220 0.46 -0.3
453,307 + PagCFBP13505_RS05220 0.53 +0.0
453,337 + PagCFBP13505_RS05220 0.56 +0.6
453,338 - PagCFBP13505_RS05220 0.56 -1.0
453,338 - PagCFBP13505_RS05220 0.56 -0.5
453,338 - PagCFBP13505_RS05220 0.56 +0.2
453,406 + PagCFBP13505_RS05220 0.63 +0.4
453,406 + PagCFBP13505_RS05220 0.63 -0.9
453,407 - PagCFBP13505_RS05220 0.63 +0.1
453,497 - PagCFBP13505_RS05220 0.73 -0.6
453,497 - PagCFBP13505_RS05220 0.73 -1.1
453,529 + PagCFBP13505_RS05220 0.76 -0.1
453,538 - PagCFBP13505_RS05220 0.77 -0.2
453,670 + +0.3
453,674 + +0.4
453,674 + -0.2
453,674 + -0.3
453,675 - +0.3
453,707 + -0.1
453,707 + +0.3
453,708 - -1.1
453,708 - +0.5
453,709 + -0.3
453,730 + +0.5
453,730 + -0.6
453,730 + -0.6

Or see this region's nucleotide sequence