Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS12225 and PagCFBP13505_RS12230 overlap by 4 nucleotides PagCFBP13505_RS12230 and PagCFBP13505_RS12235 are separated by 26 nucleotides PagCFBP13505_RS12235 and PagCFBP13505_RS12240 are separated by 698 nucleotides
PagCFBP13505_RS12225: PagCFBP13505_RS12225 - RNA polymerase sigma factor, at 52,467 to 52,967
_RS12225
PagCFBP13505_RS12230: PagCFBP13505_RS12230 - hypothetical protein, at 52,964 to 53,755
_RS12230
PagCFBP13505_RS12235: PagCFBP13505_RS12235 - YceI family protein, at 53,782 to 54,360
_RS12235
PagCFBP13505_RS12240: PagCFBP13505_RS12240 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 55,059 to 56,195
_RS12240
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.805 kb on + strand, within PagCFBP13505_RS12225 at 52.806 kb on - strand, within PagCFBP13505_RS12225 at 52.824 kb on + strand, within PagCFBP13505_RS12225 at 52.824 kb on + strand, within PagCFBP13505_RS12225 at 52.824 kb on + strand, within PagCFBP13505_RS12225 at 52.825 kb on - strand, within PagCFBP13505_RS12225 at 52.886 kb on + strand, within PagCFBP13505_RS12225 at 52.887 kb on - strand, within PagCFBP13505_RS12225 at 52.982 kb on - strand at 53.106 kb on + strand, within PagCFBP13505_RS12230 at 53.116 kb on + strand, within PagCFBP13505_RS12230 at 53.116 kb on + strand, within PagCFBP13505_RS12230 at 53.117 kb on - strand, within PagCFBP13505_RS12230 at 53.277 kb on + strand, within PagCFBP13505_RS12230 at 53.278 kb on - strand, within PagCFBP13505_RS12230 at 53.342 kb on - strand, within PagCFBP13505_RS12230 at 53.363 kb on + strand, within PagCFBP13505_RS12230 at 53.365 kb on + strand, within PagCFBP13505_RS12230 at 53.365 kb on + strand, within PagCFBP13505_RS12230 at 53.375 kb on + strand, within PagCFBP13505_RS12230 at 53.375 kb on + strand, within PagCFBP13505_RS12230 at 53.441 kb on - strand, within PagCFBP13505_RS12230 at 53.441 kb on - strand, within PagCFBP13505_RS12230 at 53.570 kb on + strand, within PagCFBP13505_RS12230 at 53.591 kb on - strand, within PagCFBP13505_RS12230 at 53.682 kb on - strand at 53.682 kb on - strand at 53.777 kb on + strand at 53.786 kb on - strand at 53.900 kb on - strand, within PagCFBP13505_RS12235 at 53.900 kb on - strand, within PagCFBP13505_RS12235 at 54.009 kb on - strand, within PagCFBP13505_RS12235 at 54.055 kb on - strand, within PagCFBP13505_RS12235 at 54.062 kb on + strand, within PagCFBP13505_RS12235 at 54.106 kb on + strand, within PagCFBP13505_RS12235 at 54.144 kb on + strand, within PagCFBP13505_RS12235 at 54.145 kb on - strand, within PagCFBP13505_RS12235 at 54.280 kb on - strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.287 kb on + strand, within PagCFBP13505_RS12235 at 54.306 kb on - strand at 54.341 kb on - strand at 54.364 kb on + strand at 54.379 kb on - strand at 54.440 kb on + strand at 54.446 kb on - strand at 54.469 kb on + strand at 54.470 kb on - strand at 54.517 kb on - strand at 54.534 kb on - strand at 54.552 kb on + strand at 54.557 kb on + strand at 54.677 kb on - strand at 54.792 kb on - strand at 54.799 kb on + strand at 54.802 kb on + strand at 54.847 kb on - strand at 54.851 kb on + strand at 54.856 kb on - strand at 54.901 kb on + strand at 54.905 kb on - strand at 54.940 kb on + strand at 54.940 kb on + strand at 54.941 kb on - strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.013 kb on + strand at 55.031 kb on + strand at 55.031 kb on + strand at 55.032 kb on - strand at 55.116 kb on - strand at 55.216 kb on + strand, within PagCFBP13505_RS12240 at 55.216 kb on + strand, within PagCFBP13505_RS12240 at 55.216 kb on + strand, within PagCFBP13505_RS12240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 52,805 + PagCFBP13505_RS12225 0.67 -0.7 52,806 - PagCFBP13505_RS12225 0.68 -0.7 52,824 + PagCFBP13505_RS12225 0.71 +0.0 52,824 + PagCFBP13505_RS12225 0.71 +0.2 52,824 + PagCFBP13505_RS12225 0.71 +1.7 52,825 - PagCFBP13505_RS12225 0.71 -0.6 52,886 + PagCFBP13505_RS12225 0.84 -1.7 52,887 - PagCFBP13505_RS12225 0.84 +0.6 52,982 - -0.8 53,106 + PagCFBP13505_RS12230 0.18 +1.5 53,116 + PagCFBP13505_RS12230 0.19 -1.5 53,116 + PagCFBP13505_RS12230 0.19 -3.0 53,117 - PagCFBP13505_RS12230 0.19 +1.3 53,277 + PagCFBP13505_RS12230 0.40 +0.3 53,278 - PagCFBP13505_RS12230 0.40 -0.7 53,342 - PagCFBP13505_RS12230 0.48 +0.7 53,363 + PagCFBP13505_RS12230 0.50 -0.7 53,365 + PagCFBP13505_RS12230 0.51 +1.7 53,365 + PagCFBP13505_RS12230 0.51 +0.4 53,375 + PagCFBP13505_RS12230 0.52 +1.3 53,375 + PagCFBP13505_RS12230 0.52 +0.7 53,441 - PagCFBP13505_RS12230 0.60 +0.2 53,441 - PagCFBP13505_RS12230 0.60 -0.4 53,570 + PagCFBP13505_RS12230 0.77 -0.6 53,591 - PagCFBP13505_RS12230 0.79 +0.3 53,682 - -0.3 53,682 - -2.8 53,777 + +1.8 53,786 - -0.5 53,900 - PagCFBP13505_RS12235 0.20 -0.4 53,900 - PagCFBP13505_RS12235 0.20 +0.1 54,009 - PagCFBP13505_RS12235 0.39 -0.3 54,055 - PagCFBP13505_RS12235 0.47 -0.3 54,062 + PagCFBP13505_RS12235 0.48 +2.0 54,106 + PagCFBP13505_RS12235 0.56 -0.3 54,144 + PagCFBP13505_RS12235 0.63 -0.5 54,145 - PagCFBP13505_RS12235 0.63 -1.9 54,280 - PagCFBP13505_RS12235 0.86 -0.2 54,287 + PagCFBP13505_RS12235 0.87 -0.0 54,287 + PagCFBP13505_RS12235 0.87 -0.7 54,287 + PagCFBP13505_RS12235 0.87 -1.9 54,306 - -0.8 54,341 - -1.4 54,364 + -1.2 54,379 - +1.1 54,440 + -2.1 54,446 - -0.6 54,469 + +0.3 54,470 - -0.2 54,517 - +0.0 54,534 - +1.4 54,552 + +0.2 54,557 + -1.1 54,677 - -0.3 54,792 - -1.3 54,799 + +1.1 54,802 + -0.7 54,847 - +0.2 54,851 + -0.6 54,856 - -0.1 54,901 + +0.2 54,905 - -0.4 54,940 + +0.4 54,940 + +0.2 54,941 - -0.1 55,013 + -0.8 55,013 + -0.4 55,013 + -0.9 55,013 + -0.4 55,031 + +1.6 55,031 + -0.4 55,032 - -0.3 55,116 - +0.1 55,216 + PagCFBP13505_RS12240 0.14 -0.4 55,216 + PagCFBP13505_RS12240 0.14 -1.4 55,216 + PagCFBP13505_RS12240 0.14 +0.6
Or see this region's nucleotide sequence