Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS12235

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS12225 and PagCFBP13505_RS12230 overlap by 4 nucleotidesPagCFBP13505_RS12230 and PagCFBP13505_RS12235 are separated by 26 nucleotidesPagCFBP13505_RS12235 and PagCFBP13505_RS12240 are separated by 698 nucleotides PagCFBP13505_RS12225: PagCFBP13505_RS12225 - RNA polymerase sigma factor, at 52,467 to 52,967 _RS12225 PagCFBP13505_RS12230: PagCFBP13505_RS12230 - hypothetical protein, at 52,964 to 53,755 _RS12230 PagCFBP13505_RS12235: PagCFBP13505_RS12235 - YceI family protein, at 53,782 to 54,360 _RS12235 PagCFBP13505_RS12240: PagCFBP13505_RS12240 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 55,059 to 56,195 _RS12240 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.805 kb on + strand, within PagCFBP13505_RS12225at 52.806 kb on - strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.824 kb on + strand, within PagCFBP13505_RS12225at 52.825 kb on - strand, within PagCFBP13505_RS12225at 52.886 kb on + strand, within PagCFBP13505_RS12225at 52.887 kb on - strand, within PagCFBP13505_RS12225at 52.982 kb on - strandat 53.106 kb on + strand, within PagCFBP13505_RS12230at 53.116 kb on + strand, within PagCFBP13505_RS12230at 53.116 kb on + strand, within PagCFBP13505_RS12230at 53.117 kb on - strand, within PagCFBP13505_RS12230at 53.277 kb on + strand, within PagCFBP13505_RS12230at 53.278 kb on - strand, within PagCFBP13505_RS12230at 53.342 kb on - strand, within PagCFBP13505_RS12230at 53.363 kb on + strand, within PagCFBP13505_RS12230at 53.365 kb on + strand, within PagCFBP13505_RS12230at 53.365 kb on + strand, within PagCFBP13505_RS12230at 53.375 kb on + strand, within PagCFBP13505_RS12230at 53.375 kb on + strand, within PagCFBP13505_RS12230at 53.441 kb on - strand, within PagCFBP13505_RS12230at 53.441 kb on - strand, within PagCFBP13505_RS12230at 53.570 kb on + strand, within PagCFBP13505_RS12230at 53.591 kb on - strand, within PagCFBP13505_RS12230at 53.682 kb on - strandat 53.682 kb on - strandat 53.777 kb on + strandat 53.786 kb on - strandat 53.900 kb on - strand, within PagCFBP13505_RS12235at 53.900 kb on - strand, within PagCFBP13505_RS12235at 54.009 kb on - strand, within PagCFBP13505_RS12235at 54.055 kb on - strand, within PagCFBP13505_RS12235at 54.062 kb on + strand, within PagCFBP13505_RS12235at 54.106 kb on + strand, within PagCFBP13505_RS12235at 54.144 kb on + strand, within PagCFBP13505_RS12235at 54.145 kb on - strand, within PagCFBP13505_RS12235at 54.280 kb on - strand, within PagCFBP13505_RS12235at 54.287 kb on + strand, within PagCFBP13505_RS12235at 54.287 kb on + strand, within PagCFBP13505_RS12235at 54.287 kb on + strand, within PagCFBP13505_RS12235at 54.306 kb on - strandat 54.341 kb on - strandat 54.364 kb on + strandat 54.379 kb on - strandat 54.440 kb on + strandat 54.446 kb on - strandat 54.469 kb on + strandat 54.470 kb on - strandat 54.517 kb on - strandat 54.534 kb on - strandat 54.552 kb on + strandat 54.557 kb on + strandat 54.677 kb on - strandat 54.792 kb on - strandat 54.799 kb on + strandat 54.802 kb on + strandat 54.847 kb on - strandat 54.851 kb on + strandat 54.856 kb on - strandat 54.901 kb on + strandat 54.905 kb on - strandat 54.940 kb on + strandat 54.940 kb on + strandat 54.941 kb on - strandat 55.013 kb on + strandat 55.013 kb on + strandat 55.013 kb on + strandat 55.013 kb on + strandat 55.031 kb on + strandat 55.031 kb on + strandat 55.032 kb on - strandat 55.116 kb on - strandat 55.216 kb on + strand, within PagCFBP13505_RS12240at 55.216 kb on + strand, within PagCFBP13505_RS12240at 55.216 kb on + strand, within PagCFBP13505_RS12240

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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52,805 + PagCFBP13505_RS12225 0.67 -0.7
52,806 - PagCFBP13505_RS12225 0.68 -0.1
52,824 + PagCFBP13505_RS12225 0.71 +0.6
52,824 + PagCFBP13505_RS12225 0.71 +0.2
52,824 + PagCFBP13505_RS12225 0.71 +1.2
52,825 - PagCFBP13505_RS12225 0.71 -0.2
52,886 + PagCFBP13505_RS12225 0.84 +1.4
52,887 - PagCFBP13505_RS12225 0.84 +0.4
52,982 - -0.7
53,106 + PagCFBP13505_RS12230 0.18 -0.4
53,116 + PagCFBP13505_RS12230 0.19 -0.0
53,116 + PagCFBP13505_RS12230 0.19 -1.6
53,117 - PagCFBP13505_RS12230 0.19 +0.9
53,277 + PagCFBP13505_RS12230 0.40 +0.6
53,278 - PagCFBP13505_RS12230 0.40 -0.9
53,342 - PagCFBP13505_RS12230 0.48 -0.9
53,363 + PagCFBP13505_RS12230 0.50 +0.6
53,365 + PagCFBP13505_RS12230 0.51 +0.0
53,365 + PagCFBP13505_RS12230 0.51 -2.2
53,375 + PagCFBP13505_RS12230 0.52 +0.7
53,375 + PagCFBP13505_RS12230 0.52 +0.5
53,441 - PagCFBP13505_RS12230 0.60 +0.2
53,441 - PagCFBP13505_RS12230 0.60 +0.2
53,570 + PagCFBP13505_RS12230 0.77 -2.4
53,591 - PagCFBP13505_RS12230 0.79 -0.6
53,682 - -0.2
53,682 - -1.0
53,777 + +0.2
53,786 - -0.5
53,900 - PagCFBP13505_RS12235 0.20 -0.2
53,900 - PagCFBP13505_RS12235 0.20 +1.3
54,009 - PagCFBP13505_RS12235 0.39 +0.2
54,055 - PagCFBP13505_RS12235 0.47 -0.1
54,062 + PagCFBP13505_RS12235 0.48 +1.1
54,106 + PagCFBP13505_RS12235 0.56 +0.1
54,144 + PagCFBP13505_RS12235 0.63 -0.3
54,145 - PagCFBP13505_RS12235 0.63 -0.5
54,280 - PagCFBP13505_RS12235 0.86 -0.4
54,287 + PagCFBP13505_RS12235 0.87 -0.0
54,287 + PagCFBP13505_RS12235 0.87 -0.4
54,287 + PagCFBP13505_RS12235 0.87 +0.5
54,306 - -1.3
54,341 - -0.3
54,364 + -0.6
54,379 - -1.0
54,440 + -0.1
54,446 - +0.2
54,469 + +0.4
54,470 - -0.1
54,517 - -0.1
54,534 - +0.1
54,552 + -0.0
54,557 + -0.6
54,677 - -0.2
54,792 - -0.7
54,799 + -0.3
54,802 + +0.4
54,847 - -0.5
54,851 + +0.2
54,856 - +0.4
54,901 + +0.6
54,905 - +0.1
54,940 + +1.3
54,940 + +0.2
54,941 - +0.6
55,013 + +0.2
55,013 + +1.4
55,013 + -0.4
55,013 + -1.0
55,031 + -0.0
55,031 + -0.0
55,032 - +0.7
55,116 - -0.5
55,216 + PagCFBP13505_RS12240 0.14 +0.4
55,216 + PagCFBP13505_RS12240 0.14 +0.0
55,216 + PagCFBP13505_RS12240 0.14 -0.4

Or see this region's nucleotide sequence