Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS05210 and PagCFBP13505_RS05215 are separated by 123 nucleotides PagCFBP13505_RS05215 and PagCFBP13505_RS05220 are separated by 14 nucleotides
PagCFBP13505_RS05210: PagCFBP13505_RS05210 - flagellar assembly peptidoglycan hydrolase FlgJ, at 450,045 to 451,007
_RS05210
PagCFBP13505_RS05215: PagCFBP13505_RS05215 - flagellar hook-associated protein FlgK, at 451,131 to 452,780
_RS05215
PagCFBP13505_RS05220: PagCFBP13505_RS05220 - flagellar hook-filament junction protein FlgL, at 452,795 to 453,760
_RS05220
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 450.176 kb on - strand, within PagCFBP13505_RS05210 at 450.176 kb on - strand, within PagCFBP13505_RS05210 at 450.251 kb on + strand, within PagCFBP13505_RS05210 at 450.252 kb on - strand, within PagCFBP13505_RS05210 at 450.252 kb on - strand, within PagCFBP13505_RS05210 at 450.252 kb on - strand, within PagCFBP13505_RS05210 at 450.257 kb on + strand, within PagCFBP13505_RS05210 at 450.257 kb on + strand, within PagCFBP13505_RS05210 at 450.257 kb on + strand, within PagCFBP13505_RS05210 at 450.258 kb on - strand, within PagCFBP13505_RS05210 at 450.258 kb on - strand, within PagCFBP13505_RS05210 at 450.258 kb on - strand, within PagCFBP13505_RS05210 at 450.261 kb on + strand, within PagCFBP13505_RS05210 at 450.261 kb on + strand, within PagCFBP13505_RS05210 at 450.261 kb on + strand, within PagCFBP13505_RS05210 at 450.261 kb on + strand, within PagCFBP13505_RS05210 at 450.262 kb on - strand, within PagCFBP13505_RS05210 at 450.365 kb on + strand, within PagCFBP13505_RS05210 at 450.395 kb on + strand, within PagCFBP13505_RS05210 at 450.395 kb on + strand, within PagCFBP13505_RS05210 at 450.657 kb on + strand, within PagCFBP13505_RS05210 at 450.658 kb on - strand, within PagCFBP13505_RS05210 at 450.658 kb on - strand, within PagCFBP13505_RS05210 at 450.658 kb on - strand, within PagCFBP13505_RS05210 at 450.771 kb on + strand, within PagCFBP13505_RS05210 at 450.774 kb on - strand, within PagCFBP13505_RS05210 at 450.781 kb on - strand, within PagCFBP13505_RS05210 at 450.801 kb on + strand, within PagCFBP13505_RS05210 at 450.831 kb on + strand, within PagCFBP13505_RS05210 at 450.832 kb on - strand, within PagCFBP13505_RS05210 at 450.913 kb on - strand at 450.913 kb on - strand at 450.954 kb on - strand at 450.978 kb on + strand at 451.031 kb on + strand at 451.120 kb on - strand at 451.141 kb on + strand at 451.141 kb on + strand at 451.145 kb on + strand at 451.146 kb on - strand at 451.146 kb on - strand at 451.199 kb on + strand at 451.216 kb on - strand at 451.269 kb on - strand at 451.283 kb on + strand at 451.283 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.287 kb on + strand at 451.288 kb on - strand at 451.288 kb on - strand at 451.288 kb on - strand at 451.288 kb on - strand at 451.307 kb on + strand, within PagCFBP13505_RS05215 at 451.318 kb on + strand, within PagCFBP13505_RS05215 at 451.330 kb on - strand, within PagCFBP13505_RS05215 at 451.340 kb on + strand, within PagCFBP13505_RS05215 at 451.347 kb on - strand, within PagCFBP13505_RS05215 at 451.375 kb on - strand, within PagCFBP13505_RS05215 at 451.385 kb on - strand, within PagCFBP13505_RS05215 at 451.409 kb on + strand, within PagCFBP13505_RS05215 at 451.472 kb on + strand, within PagCFBP13505_RS05215 at 451.579 kb on - strand, within PagCFBP13505_RS05215 at 451.587 kb on - strand, within PagCFBP13505_RS05215 at 451.641 kb on - strand, within PagCFBP13505_RS05215 at 451.712 kb on + strand, within PagCFBP13505_RS05215 at 451.712 kb on + strand, within PagCFBP13505_RS05215 at 451.712 kb on + strand, within PagCFBP13505_RS05215 at 451.712 kb on + strand, within PagCFBP13505_RS05215 at 451.713 kb on - strand, within PagCFBP13505_RS05215 at 451.798 kb on - strand, within PagCFBP13505_RS05215 at 451.985 kb on + strand, within PagCFBP13505_RS05215 at 452.078 kb on + strand, within PagCFBP13505_RS05215 at 452.111 kb on + strand, within PagCFBP13505_RS05215 at 452.183 kb on + strand, within PagCFBP13505_RS05215 at 452.209 kb on - strand, within PagCFBP13505_RS05215 at 452.221 kb on - strand, within PagCFBP13505_RS05215 at 452.221 kb on - strand, within PagCFBP13505_RS05215 at 452.232 kb on - strand, within PagCFBP13505_RS05215 at 452.261 kb on + strand, within PagCFBP13505_RS05215 at 452.262 kb on - strand, within PagCFBP13505_RS05215 at 452.286 kb on - strand, within PagCFBP13505_RS05215 at 452.408 kb on + strand, within PagCFBP13505_RS05215 at 452.458 kb on + strand, within PagCFBP13505_RS05215 at 452.458 kb on + strand, within PagCFBP13505_RS05215 at 452.459 kb on - strand, within PagCFBP13505_RS05215 at 452.480 kb on + strand, within PagCFBP13505_RS05215 at 452.568 kb on - strand, within PagCFBP13505_RS05215 at 452.576 kb on + strand, within PagCFBP13505_RS05215 at 452.600 kb on + strand, within PagCFBP13505_RS05215 at 452.709 kb on + strand at 452.709 kb on + strand at 452.709 kb on + strand at 452.712 kb on + strand at 452.712 kb on + strand at 452.712 kb on + strand at 452.712 kb on + strand at 452.712 kb on + strand at 452.713 kb on - strand at 452.713 kb on - strand at 452.713 kb on - strand at 452.792 kb on - strand at 452.905 kb on + strand, within PagCFBP13505_RS05220 at 452.978 kb on + strand, within PagCFBP13505_RS05220 at 453.028 kb on + strand, within PagCFBP13505_RS05220 at 453.029 kb on - strand, within PagCFBP13505_RS05220 at 453.127 kb on + strand, within PagCFBP13505_RS05220 at 453.235 kb on - strand, within PagCFBP13505_RS05220 at 453.307 kb on + strand, within PagCFBP13505_RS05220 at 453.337 kb on + strand, within PagCFBP13505_RS05220 at 453.338 kb on - strand, within PagCFBP13505_RS05220 at 453.338 kb on - strand, within PagCFBP13505_RS05220 at 453.338 kb on - strand, within PagCFBP13505_RS05220 at 453.406 kb on + strand, within PagCFBP13505_RS05220 at 453.406 kb on + strand, within PagCFBP13505_RS05220 at 453.407 kb on - strand, within PagCFBP13505_RS05220 at 453.497 kb on - strand, within PagCFBP13505_RS05220 at 453.497 kb on - strand, within PagCFBP13505_RS05220 at 453.529 kb on + strand, within PagCFBP13505_RS05220 at 453.538 kb on - strand, within PagCFBP13505_RS05220 at 453.670 kb on + strand at 453.674 kb on + strand at 453.674 kb on + strand at 453.674 kb on + strand at 453.675 kb on - strand at 453.707 kb on + strand at 453.707 kb on + strand at 453.708 kb on - strand at 453.708 kb on - strand at 453.709 kb on + strand at 453.730 kb on + strand at 453.730 kb on + strand at 453.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 450,176 - PagCFBP13505_RS05210 0.14 -0.6 450,176 - PagCFBP13505_RS05210 0.14 -0.5 450,251 + PagCFBP13505_RS05210 0.21 +1.1 450,252 - PagCFBP13505_RS05210 0.21 +0.0 450,252 - PagCFBP13505_RS05210 0.21 +0.4 450,252 - PagCFBP13505_RS05210 0.21 +0.2 450,257 + PagCFBP13505_RS05210 0.22 +0.7 450,257 + PagCFBP13505_RS05210 0.22 +1.4 450,257 + PagCFBP13505_RS05210 0.22 -2.5 450,258 - PagCFBP13505_RS05210 0.22 +0.9 450,258 - PagCFBP13505_RS05210 0.22 +1.5 450,258 - PagCFBP13505_RS05210 0.22 +1.4 450,261 + PagCFBP13505_RS05210 0.22 +0.1 450,261 + PagCFBP13505_RS05210 0.22 +0.4 450,261 + PagCFBP13505_RS05210 0.22 +0.6 450,261 + PagCFBP13505_RS05210 0.22 +0.0 450,262 - PagCFBP13505_RS05210 0.23 +1.3 450,365 + PagCFBP13505_RS05210 0.33 +0.8 450,395 + PagCFBP13505_RS05210 0.36 -1.6 450,395 + PagCFBP13505_RS05210 0.36 +2.2 450,657 + PagCFBP13505_RS05210 0.64 +0.6 450,658 - PagCFBP13505_RS05210 0.64 -0.3 450,658 - PagCFBP13505_RS05210 0.64 -0.1 450,658 - PagCFBP13505_RS05210 0.64 -0.7 450,771 + PagCFBP13505_RS05210 0.75 +0.2 450,774 - PagCFBP13505_RS05210 0.76 +0.8 450,781 - PagCFBP13505_RS05210 0.76 +0.1 450,801 + PagCFBP13505_RS05210 0.79 -1.3 450,831 + PagCFBP13505_RS05210 0.82 -0.3 450,832 - PagCFBP13505_RS05210 0.82 +0.3 450,913 - +0.3 450,913 - -1.6 450,954 - +0.0 450,978 + -0.1 451,031 + -0.2 451,120 - -0.0 451,141 + +0.0 451,141 + -1.5 451,145 + -0.8 451,146 - +0.5 451,146 - -1.3 451,199 + +0.3 451,216 - +0.9 451,269 - +0.0 451,283 + +0.2 451,283 + +0.5 451,287 + -0.4 451,287 + -2.9 451,287 + +0.5 451,287 + +0.6 451,287 + +0.4 451,287 + +0.5 451,287 + +0.0 451,288 - -2.0 451,288 - +0.0 451,288 - +0.0 451,288 - +0.8 451,307 + PagCFBP13505_RS05215 0.11 +1.0 451,318 + PagCFBP13505_RS05215 0.11 +0.3 451,330 - PagCFBP13505_RS05215 0.12 -0.2 451,340 + PagCFBP13505_RS05215 0.13 -0.1 451,347 - PagCFBP13505_RS05215 0.13 +0.9 451,375 - PagCFBP13505_RS05215 0.15 +0.4 451,385 - PagCFBP13505_RS05215 0.15 -1.0 451,409 + PagCFBP13505_RS05215 0.17 +0.3 451,472 + PagCFBP13505_RS05215 0.21 +0.7 451,579 - PagCFBP13505_RS05215 0.27 -0.3 451,587 - PagCFBP13505_RS05215 0.28 -0.7 451,641 - PagCFBP13505_RS05215 0.31 +0.8 451,712 + PagCFBP13505_RS05215 0.35 -0.6 451,712 + PagCFBP13505_RS05215 0.35 +0.2 451,712 + PagCFBP13505_RS05215 0.35 -1.3 451,712 + PagCFBP13505_RS05215 0.35 +0.4 451,713 - PagCFBP13505_RS05215 0.35 -1.6 451,798 - PagCFBP13505_RS05215 0.40 -0.0 451,985 + PagCFBP13505_RS05215 0.52 +1.3 452,078 + PagCFBP13505_RS05215 0.57 +0.1 452,111 + PagCFBP13505_RS05215 0.59 +0.4 452,183 + PagCFBP13505_RS05215 0.64 -1.5 452,209 - PagCFBP13505_RS05215 0.65 +0.0 452,221 - PagCFBP13505_RS05215 0.66 -0.7 452,221 - PagCFBP13505_RS05215 0.66 -1.5 452,232 - PagCFBP13505_RS05215 0.67 -0.5 452,261 + PagCFBP13505_RS05215 0.68 -0.2 452,262 - PagCFBP13505_RS05215 0.69 +0.3 452,286 - PagCFBP13505_RS05215 0.70 -0.4 452,408 + PagCFBP13505_RS05215 0.77 -0.2 452,458 + PagCFBP13505_RS05215 0.80 +0.2 452,458 + PagCFBP13505_RS05215 0.80 +0.6 452,459 - PagCFBP13505_RS05215 0.80 +0.8 452,480 + PagCFBP13505_RS05215 0.82 -3.0 452,568 - PagCFBP13505_RS05215 0.87 +0.9 452,576 + PagCFBP13505_RS05215 0.88 +0.7 452,600 + PagCFBP13505_RS05215 0.89 +0.2 452,709 + -0.4 452,709 + -1.3 452,709 + +0.7 452,712 + +1.1 452,712 + +0.9 452,712 + -0.5 452,712 + +0.6 452,712 + -2.3 452,713 - -1.6 452,713 - -1.0 452,713 - +1.4 452,792 - -0.3 452,905 + PagCFBP13505_RS05220 0.11 -0.9 452,978 + PagCFBP13505_RS05220 0.19 -0.2 453,028 + PagCFBP13505_RS05220 0.24 +0.1 453,029 - PagCFBP13505_RS05220 0.24 -1.7 453,127 + PagCFBP13505_RS05220 0.34 -0.2 453,235 - PagCFBP13505_RS05220 0.46 -0.6 453,307 + PagCFBP13505_RS05220 0.53 +0.6 453,337 + PagCFBP13505_RS05220 0.56 +0.9 453,338 - PagCFBP13505_RS05220 0.56 -1.3 453,338 - PagCFBP13505_RS05220 0.56 -0.4 453,338 - PagCFBP13505_RS05220 0.56 -0.1 453,406 + PagCFBP13505_RS05220 0.63 +0.1 453,406 + PagCFBP13505_RS05220 0.63 -0.1 453,407 - PagCFBP13505_RS05220 0.63 -0.5 453,497 - PagCFBP13505_RS05220 0.73 -0.2 453,497 - PagCFBP13505_RS05220 0.73 -0.5 453,529 + PagCFBP13505_RS05220 0.76 +0.1 453,538 - PagCFBP13505_RS05220 0.77 +0.4 453,670 + +0.7 453,674 + -0.3 453,674 + +0.4 453,674 + +1.4 453,675 - -0.3 453,707 + -0.9 453,707 + +1.4 453,708 - -0.3 453,708 - -1.7 453,709 + -0.2 453,730 + +0.7 453,730 + -0.0 453,730 + -1.0
Or see this region's nucleotide sequence