Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS02160 and PagCFBP13505_RS02165 overlap by 4 nucleotides PagCFBP13505_RS02165 and PagCFBP13505_RS02170 are separated by 133 nucleotides PagCFBP13505_RS02170 and PagCFBP13505_RS02175 overlap by 4 nucleotides PagCFBP13505_RS02175 and PagCFBP13505_RS02180 are separated by 5 nucleotides
PagCFBP13505_RS02160: PagCFBP13505_RS02160 - flagellar transcriptional regulator FlhD, at 498,081 to 498,434
_RS02160
PagCFBP13505_RS02165: PagCFBP13505_RS02165 - flagellar transcriptional regulator FlhC, at 498,431 to 499,009
_RS02165
PagCFBP13505_RS02170: PagCFBP13505_RS02170 - flagellar motor stator protein MotA, at 499,143 to 500,030
_RS02170
PagCFBP13505_RS02175: PagCFBP13505_RS02175 - flagellar motor protein MotB, at 500,027 to 500,968
_RS02175
PagCFBP13505_RS02180: PagCFBP13505_RS02180 - chemotaxis protein CheA, at 500,974 to 502,962
_RS02180
Position (kb) 499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2 at 498.151 kb on + strand, within PagCFBP13505_RS02160 at 498.226 kb on + strand, within PagCFBP13505_RS02160 at 498.226 kb on + strand, within PagCFBP13505_RS02160 at 498.227 kb on - strand, within PagCFBP13505_RS02160 at 498.495 kb on + strand, within PagCFBP13505_RS02165 at 498.496 kb on - strand, within PagCFBP13505_RS02165 at 498.507 kb on + strand, within PagCFBP13505_RS02165 at 498.560 kb on + strand, within PagCFBP13505_RS02165 at 498.560 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.652 kb on + strand, within PagCFBP13505_RS02165 at 498.653 kb on - strand, within PagCFBP13505_RS02165 at 498.653 kb on - strand, within PagCFBP13505_RS02165 at 498.653 kb on - strand, within PagCFBP13505_RS02165 at 498.653 kb on - strand, within PagCFBP13505_RS02165 at 498.662 kb on - strand, within PagCFBP13505_RS02165 at 498.725 kb on + strand, within PagCFBP13505_RS02165 at 498.734 kb on + strand, within PagCFBP13505_RS02165 at 498.842 kb on - strand, within PagCFBP13505_RS02165 at 498.862 kb on + strand, within PagCFBP13505_RS02165 at 498.866 kb on - strand, within PagCFBP13505_RS02165 at 498.866 kb on - strand, within PagCFBP13505_RS02165 at 498.896 kb on - strand, within PagCFBP13505_RS02165 at 498.931 kb on - strand, within PagCFBP13505_RS02165 at 498.964 kb on + strand at 498.965 kb on - strand at 499.049 kb on - strand at 499.083 kb on - strand at 499.130 kb on + strand at 499.157 kb on - strand at 499.247 kb on - strand, within PagCFBP13505_RS02170 at 499.365 kb on + strand, within PagCFBP13505_RS02170 at 499.365 kb on + strand, within PagCFBP13505_RS02170 at 499.366 kb on - strand, within PagCFBP13505_RS02170 at 499.479 kb on + strand, within PagCFBP13505_RS02170 at 499.499 kb on + strand, within PagCFBP13505_RS02170 at 499.520 kb on + strand, within PagCFBP13505_RS02170 at 499.527 kb on + strand, within PagCFBP13505_RS02170 at 499.527 kb on + strand, within PagCFBP13505_RS02170 at 499.602 kb on + strand, within PagCFBP13505_RS02170 at 499.634 kb on + strand, within PagCFBP13505_RS02170 at 499.635 kb on - strand, within PagCFBP13505_RS02170 at 499.635 kb on - strand, within PagCFBP13505_RS02170 at 499.866 kb on - strand, within PagCFBP13505_RS02170 at 499.866 kb on - strand, within PagCFBP13505_RS02170 at 499.938 kb on + strand, within PagCFBP13505_RS02170 at 499.981 kb on + strand at 499.981 kb on + strand at 499.981 kb on + strand at 499.981 kb on + strand at 499.982 kb on - strand at 500.074 kb on + strand at 500.114 kb on + strand at 500.126 kb on - strand, within PagCFBP13505_RS02175 at 500.150 kb on - strand, within PagCFBP13505_RS02175 at 500.237 kb on - strand, within PagCFBP13505_RS02175 at 500.537 kb on + strand, within PagCFBP13505_RS02175 at 500.537 kb on + strand, within PagCFBP13505_RS02175 at 500.537 kb on + strand, within PagCFBP13505_RS02175 at 500.538 kb on - strand, within PagCFBP13505_RS02175 at 500.538 kb on - strand, within PagCFBP13505_RS02175 at 500.539 kb on + strand, within PagCFBP13505_RS02175 at 500.539 kb on + strand, within PagCFBP13505_RS02175 at 500.540 kb on - strand, within PagCFBP13505_RS02175 at 500.548 kb on + strand, within PagCFBP13505_RS02175 at 500.627 kb on + strand, within PagCFBP13505_RS02175 at 500.627 kb on + strand, within PagCFBP13505_RS02175 at 501.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 498,151 + PagCFBP13505_RS02160 0.20 +0.1 498,226 + PagCFBP13505_RS02160 0.41 +0.4 498,226 + PagCFBP13505_RS02160 0.41 +0.1 498,227 - PagCFBP13505_RS02160 0.41 +0.6 498,495 + PagCFBP13505_RS02165 0.11 +0.5 498,496 - PagCFBP13505_RS02165 0.11 -1.7 498,507 + PagCFBP13505_RS02165 0.13 +1.3 498,560 + PagCFBP13505_RS02165 0.22 +1.1 498,560 + PagCFBP13505_RS02165 0.22 -0.8 498,652 + PagCFBP13505_RS02165 0.38 +0.1 498,652 + PagCFBP13505_RS02165 0.38 +0.4 498,652 + PagCFBP13505_RS02165 0.38 +0.3 498,652 + PagCFBP13505_RS02165 0.38 +0.7 498,652 + PagCFBP13505_RS02165 0.38 +0.3 498,652 + PagCFBP13505_RS02165 0.38 +0.7 498,653 - PagCFBP13505_RS02165 0.38 -1.5 498,653 - PagCFBP13505_RS02165 0.38 -0.0 498,653 - PagCFBP13505_RS02165 0.38 +0.5 498,653 - PagCFBP13505_RS02165 0.38 -0.4 498,662 - PagCFBP13505_RS02165 0.40 +0.5 498,725 + PagCFBP13505_RS02165 0.51 -0.2 498,734 + PagCFBP13505_RS02165 0.52 -2.0 498,842 - PagCFBP13505_RS02165 0.71 -0.5 498,862 + PagCFBP13505_RS02165 0.74 +1.3 498,866 - PagCFBP13505_RS02165 0.75 +0.4 498,866 - PagCFBP13505_RS02165 0.75 +0.7 498,896 - PagCFBP13505_RS02165 0.80 +0.1 498,931 - PagCFBP13505_RS02165 0.86 -1.3 498,964 + -1.9 498,965 - +0.5 499,049 - +0.4 499,083 - +2.0 499,130 + +0.8 499,157 - -0.1 499,247 - PagCFBP13505_RS02170 0.12 +0.7 499,365 + PagCFBP13505_RS02170 0.25 +0.9 499,365 + PagCFBP13505_RS02170 0.25 -2.6 499,366 - PagCFBP13505_RS02170 0.25 -0.1 499,479 + PagCFBP13505_RS02170 0.38 -1.3 499,499 + PagCFBP13505_RS02170 0.40 -0.1 499,520 + PagCFBP13505_RS02170 0.42 +0.3 499,527 + PagCFBP13505_RS02170 0.43 +0.2 499,527 + PagCFBP13505_RS02170 0.43 +0.2 499,602 + PagCFBP13505_RS02170 0.52 +0.2 499,634 + PagCFBP13505_RS02170 0.55 +0.3 499,635 - PagCFBP13505_RS02170 0.55 +0.5 499,635 - PagCFBP13505_RS02170 0.55 +0.7 499,866 - PagCFBP13505_RS02170 0.81 +0.8 499,866 - PagCFBP13505_RS02170 0.81 -0.8 499,938 + PagCFBP13505_RS02170 0.90 +0.1 499,981 + +0.1 499,981 + +0.2 499,981 + +1.2 499,981 + -0.1 499,982 - +0.8 500,074 + +0.4 500,114 + +0.7 500,126 - PagCFBP13505_RS02175 0.11 -0.7 500,150 - PagCFBP13505_RS02175 0.13 +0.3 500,237 - PagCFBP13505_RS02175 0.22 -0.7 500,537 + PagCFBP13505_RS02175 0.54 +0.6 500,537 + PagCFBP13505_RS02175 0.54 +1.4 500,537 + PagCFBP13505_RS02175 0.54 -0.1 500,538 - PagCFBP13505_RS02175 0.54 +0.6 500,538 - PagCFBP13505_RS02175 0.54 +0.9 500,539 + PagCFBP13505_RS02175 0.54 +0.7 500,539 + PagCFBP13505_RS02175 0.54 +0.0 500,540 - PagCFBP13505_RS02175 0.54 +1.0 500,548 + PagCFBP13505_RS02175 0.55 +2.3 500,627 + PagCFBP13505_RS02175 0.64 +0.7 500,627 + PagCFBP13505_RS02175 0.64 +0.3 501,030 - -0.9
Or see this region's nucleotide sequence