Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS12260 and PagCFBP13505_RS12265 overlap by 1 nucleotides PagCFBP13505_RS12265 and PagCFBP13505_RS12270 overlap by 4 nucleotides PagCFBP13505_RS12270 and PagCFBP13505_RS12275 are separated by 104 nucleotides
PagCFBP13505_RS12260: PagCFBP13505_RS12260 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 60,058 to 61,725
_RS12260
PagCFBP13505_RS12265: PagCFBP13505_RS12265 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 61,725 to 62,045
_RS12265
PagCFBP13505_RS12270: PagCFBP13505_RS12270 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 62,042 to 62,407
_RS12270
PagCFBP13505_RS12275: PagCFBP13505_RS12275 - haloacid dehalogenase type II, at 62,512 to 63,207
_RS12275
Position (kb) 61
62
63 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 60.742 kb on + strand, within PagCFBP13505_RS12260 at 60.743 kb on - strand, within PagCFBP13505_RS12260 at 60.743 kb on - strand, within PagCFBP13505_RS12260 at 60.743 kb on - strand, within PagCFBP13505_RS12260 at 60.770 kb on - strand, within PagCFBP13505_RS12260 at 60.790 kb on - strand, within PagCFBP13505_RS12260 at 60.841 kb on + strand, within PagCFBP13505_RS12260 at 60.842 kb on - strand, within PagCFBP13505_RS12260 at 60.842 kb on - strand, within PagCFBP13505_RS12260 at 60.944 kb on - strand, within PagCFBP13505_RS12260 at 60.944 kb on - strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.009 kb on + strand, within PagCFBP13505_RS12260 at 61.010 kb on - strand, within PagCFBP13505_RS12260 at 61.010 kb on - strand, within PagCFBP13505_RS12260 at 61.010 kb on - strand, within PagCFBP13505_RS12260 at 61.010 kb on - strand, within PagCFBP13505_RS12260 at 61.011 kb on + strand, within PagCFBP13505_RS12260 at 61.012 kb on - strand, within PagCFBP13505_RS12260 at 61.055 kb on - strand, within PagCFBP13505_RS12260 at 61.091 kb on + strand, within PagCFBP13505_RS12260 at 61.091 kb on + strand, within PagCFBP13505_RS12260 at 61.092 kb on - strand, within PagCFBP13505_RS12260 at 61.261 kb on + strand, within PagCFBP13505_RS12260 at 61.261 kb on + strand, within PagCFBP13505_RS12260 at 61.262 kb on - strand, within PagCFBP13505_RS12260 at 61.262 kb on - strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.263 kb on + strand, within PagCFBP13505_RS12260 at 61.264 kb on - strand, within PagCFBP13505_RS12260 at 61.264 kb on - strand, within PagCFBP13505_RS12260 at 61.422 kb on + strand, within PagCFBP13505_RS12260 at 61.492 kb on + strand, within PagCFBP13505_RS12260 at 61.493 kb on - strand, within PagCFBP13505_RS12260 at 61.493 kb on - strand, within PagCFBP13505_RS12260 at 61.516 kb on + strand, within PagCFBP13505_RS12260 at 61.607 kb on + strand at 61.608 kb on - strand at 61.635 kb on - strand at 61.705 kb on + strand at 61.705 kb on + strand at 61.708 kb on + strand at 61.708 kb on + strand at 61.709 kb on - strand at 61.709 kb on - strand at 61.758 kb on - strand, within PagCFBP13505_RS12265 at 61.774 kb on + strand, within PagCFBP13505_RS12265 at 61.819 kb on + strand, within PagCFBP13505_RS12265 at 61.926 kb on - strand, within PagCFBP13505_RS12265 at 61.926 kb on - strand, within PagCFBP13505_RS12265 at 61.932 kb on - strand, within PagCFBP13505_RS12265 at 62.042 kb on - strand at 62.143 kb on - strand, within PagCFBP13505_RS12270 at 62.264 kb on + strand, within PagCFBP13505_RS12270 at 62.285 kb on + strand, within PagCFBP13505_RS12270 at 62.285 kb on + strand, within PagCFBP13505_RS12270 at 62.285 kb on + strand, within PagCFBP13505_RS12270 at 62.285 kb on + strand, within PagCFBP13505_RS12270 at 62.286 kb on - strand, within PagCFBP13505_RS12270 at 62.286 kb on - strand, within PagCFBP13505_RS12270 at 62.286 kb on - strand, within PagCFBP13505_RS12270 at 62.286 kb on - strand, within PagCFBP13505_RS12270 at 62.362 kb on - strand, within PagCFBP13505_RS12270 at 62.368 kb on + strand, within PagCFBP13505_RS12270 at 62.368 kb on + strand, within PagCFBP13505_RS12270 at 62.369 kb on - strand, within PagCFBP13505_RS12270 at 62.389 kb on + strand at 62.411 kb on - strand at 62.440 kb on + strand at 62.440 kb on + strand at 62.487 kb on + strand at 62.487 kb on + strand at 62.487 kb on + strand at 62.492 kb on + strand at 62.493 kb on - strand at 62.495 kb on + strand at 62.550 kb on + strand at 62.589 kb on - strand, within PagCFBP13505_RS12275 at 62.743 kb on - strand, within PagCFBP13505_RS12275 at 62.743 kb on - strand, within PagCFBP13505_RS12275 at 62.744 kb on + strand, within PagCFBP13505_RS12275 at 62.744 kb on + strand, within PagCFBP13505_RS12275 at 62.744 kb on + strand, within PagCFBP13505_RS12275 at 62.744 kb on + strand, within PagCFBP13505_RS12275 at 62.745 kb on - strand, within PagCFBP13505_RS12275 at 62.857 kb on - strand, within PagCFBP13505_RS12275 at 62.872 kb on + strand, within PagCFBP13505_RS12275 at 62.872 kb on + strand, within PagCFBP13505_RS12275 at 62.872 kb on + strand, within PagCFBP13505_RS12275 at 62.922 kb on + strand, within PagCFBP13505_RS12275 at 62.966 kb on + strand, within PagCFBP13505_RS12275 at 63.003 kb on + strand, within PagCFBP13505_RS12275 at 63.016 kb on - strand, within PagCFBP13505_RS12275 at 63.016 kb on - strand, within PagCFBP13505_RS12275
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 60,742 + PagCFBP13505_RS12260 0.41 -0.0 60,743 - PagCFBP13505_RS12260 0.41 +0.2 60,743 - PagCFBP13505_RS12260 0.41 +0.0 60,743 - PagCFBP13505_RS12260 0.41 +0.4 60,770 - PagCFBP13505_RS12260 0.43 -0.3 60,790 - PagCFBP13505_RS12260 0.44 +1.1 60,841 + PagCFBP13505_RS12260 0.47 +1.6 60,842 - PagCFBP13505_RS12260 0.47 -0.7 60,842 - PagCFBP13505_RS12260 0.47 +0.5 60,944 - PagCFBP13505_RS12260 0.53 -0.4 60,944 - PagCFBP13505_RS12260 0.53 -0.3 61,009 + PagCFBP13505_RS12260 0.57 +1.3 61,009 + PagCFBP13505_RS12260 0.57 +0.5 61,009 + PagCFBP13505_RS12260 0.57 +1.6 61,009 + PagCFBP13505_RS12260 0.57 +0.5 61,009 + PagCFBP13505_RS12260 0.57 +1.2 61,009 + PagCFBP13505_RS12260 0.57 +0.3 61,009 + PagCFBP13505_RS12260 0.57 -0.3 61,009 + PagCFBP13505_RS12260 0.57 +0.3 61,009 + PagCFBP13505_RS12260 0.57 +0.7 61,009 + PagCFBP13505_RS12260 0.57 +1.4 61,009 + PagCFBP13505_RS12260 0.57 +0.5 61,009 + PagCFBP13505_RS12260 0.57 -0.0 61,010 - PagCFBP13505_RS12260 0.57 +0.1 61,010 - PagCFBP13505_RS12260 0.57 +0.4 61,010 - PagCFBP13505_RS12260 0.57 +1.1 61,010 - PagCFBP13505_RS12260 0.57 -0.0 61,011 + PagCFBP13505_RS12260 0.57 +0.1 61,012 - PagCFBP13505_RS12260 0.57 -0.1 61,055 - PagCFBP13505_RS12260 0.60 +0.2 61,091 + PagCFBP13505_RS12260 0.62 +1.3 61,091 + PagCFBP13505_RS12260 0.62 +1.4 61,092 - PagCFBP13505_RS12260 0.62 +1.1 61,261 + PagCFBP13505_RS12260 0.72 +1.2 61,261 + PagCFBP13505_RS12260 0.72 -0.4 61,262 - PagCFBP13505_RS12260 0.72 -1.6 61,262 - PagCFBP13505_RS12260 0.72 +0.3 61,263 + PagCFBP13505_RS12260 0.72 +1.3 61,263 + PagCFBP13505_RS12260 0.72 +1.3 61,263 + PagCFBP13505_RS12260 0.72 +1.2 61,263 + PagCFBP13505_RS12260 0.72 +0.3 61,263 + PagCFBP13505_RS12260 0.72 -0.1 61,263 + PagCFBP13505_RS12260 0.72 +0.1 61,263 + PagCFBP13505_RS12260 0.72 -0.1 61,264 - PagCFBP13505_RS12260 0.72 -1.8 61,264 - PagCFBP13505_RS12260 0.72 -0.2 61,422 + PagCFBP13505_RS12260 0.82 +0.9 61,492 + PagCFBP13505_RS12260 0.86 +0.7 61,493 - PagCFBP13505_RS12260 0.86 -0.6 61,493 - PagCFBP13505_RS12260 0.86 -2.5 61,516 + PagCFBP13505_RS12260 0.87 -0.3 61,607 + +0.9 61,608 - -1.5 61,635 - +1.4 61,705 + +0.1 61,705 + +0.3 61,708 + -0.4 61,708 + +1.4 61,709 - -1.1 61,709 - +0.4 61,758 - PagCFBP13505_RS12265 0.10 -3.2 61,774 + PagCFBP13505_RS12265 0.15 -2.5 61,819 + PagCFBP13505_RS12265 0.29 -2.0 61,926 - PagCFBP13505_RS12265 0.63 -2.5 61,926 - PagCFBP13505_RS12265 0.63 -2.7 61,932 - PagCFBP13505_RS12265 0.64 -3.0 62,042 - -4.1 62,143 - PagCFBP13505_RS12270 0.28 -2.3 62,264 + PagCFBP13505_RS12270 0.61 -4.3 62,285 + PagCFBP13505_RS12270 0.66 -0.7 62,285 + PagCFBP13505_RS12270 0.66 -2.7 62,285 + PagCFBP13505_RS12270 0.66 -1.3 62,285 + PagCFBP13505_RS12270 0.66 -4.2 62,286 - PagCFBP13505_RS12270 0.67 -3.3 62,286 - PagCFBP13505_RS12270 0.67 -2.5 62,286 - PagCFBP13505_RS12270 0.67 -3.2 62,286 - PagCFBP13505_RS12270 0.67 -2.6 62,362 - PagCFBP13505_RS12270 0.87 -5.0 62,368 + PagCFBP13505_RS12270 0.89 -2.5 62,368 + PagCFBP13505_RS12270 0.89 -4.3 62,369 - PagCFBP13505_RS12270 0.89 -2.5 62,389 + -0.6 62,411 - -0.5 62,440 + -0.0 62,440 + -0.9 62,487 + +0.7 62,487 + +0.7 62,487 + -0.1 62,492 + +0.5 62,493 - -0.4 62,495 + +0.1 62,550 + -0.4 62,589 - PagCFBP13505_RS12275 0.11 +0.6 62,743 - PagCFBP13505_RS12275 0.33 -1.0 62,743 - PagCFBP13505_RS12275 0.33 -0.0 62,744 + PagCFBP13505_RS12275 0.33 +1.5 62,744 + PagCFBP13505_RS12275 0.33 +0.5 62,744 + PagCFBP13505_RS12275 0.33 +0.5 62,744 + PagCFBP13505_RS12275 0.33 +0.9 62,745 - PagCFBP13505_RS12275 0.33 +0.5 62,857 - PagCFBP13505_RS12275 0.50 -0.7 62,872 + PagCFBP13505_RS12275 0.52 +0.1 62,872 + PagCFBP13505_RS12275 0.52 +0.0 62,872 + PagCFBP13505_RS12275 0.52 -1.1 62,922 + PagCFBP13505_RS12275 0.59 -0.5 62,966 + PagCFBP13505_RS12275 0.65 +0.8 63,003 + PagCFBP13505_RS12275 0.71 -1.0 63,016 - PagCFBP13505_RS12275 0.72 -1.4 63,016 - PagCFBP13505_RS12275 0.72 +0.9
Or see this region's nucleotide sequence