Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS21000

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS20990 and PagCFBP13505_RS20995 are separated by 202 nucleotidesPagCFBP13505_RS20995 and PagCFBP13505_RS21000 are separated by 212 nucleotidesPagCFBP13505_RS21000 and PagCFBP13505_RS21005 are separated by 104 nucleotides PagCFBP13505_RS20990: PagCFBP13505_RS20990 - YncE family protein, at 172 to 1,224 _RS20990 PagCFBP13505_RS20995: PagCFBP13505_RS20995 - DUF1471 domain-containing protein, at 1,427 to 1,636 _RS20995 PagCFBP13505_RS21000: PagCFBP13505_RS21000 - MFS transporter, at 1,849 to 3,036 _RS21000 PagCFBP13505_RS21005: PagCFBP13505_RS21005 - AraC family transcriptional regulator, at 3,141 to 4,106 _RS21005 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.862 kb on + strand, within PagCFBP13505_RS20990at 0.862 kb on + strand, within PagCFBP13505_RS20990at 0.862 kb on + strand, within PagCFBP13505_RS20990at 0.863 kb on - strand, within PagCFBP13505_RS20990at 0.921 kb on - strand, within PagCFBP13505_RS20990at 0.921 kb on - strand, within PagCFBP13505_RS20990at 0.989 kb on - strand, within PagCFBP13505_RS20990at 0.989 kb on - strand, within PagCFBP13505_RS20990at 1.000 kb on - strand, within PagCFBP13505_RS20990at 1.072 kb on - strand, within PagCFBP13505_RS20990at 1.098 kb on - strand, within PagCFBP13505_RS20990at 1.098 kb on - strand, within PagCFBP13505_RS20990at 1.098 kb on - strand, within PagCFBP13505_RS20990at 1.206 kb on + strandat 1.206 kb on + strandat 1.207 kb on - strandat 1.213 kb on - strandat 1.213 kb on - strandat 1.240 kb on - strandat 1.360 kb on + strandat 1.361 kb on - strandat 1.361 kb on - strandat 1.416 kb on + strandat 1.423 kb on + strandat 1.423 kb on + strandat 1.428 kb on + strandat 1.428 kb on + strandat 1.428 kb on + strandat 1.429 kb on - strandat 1.470 kb on + strand, within PagCFBP13505_RS20995at 1.471 kb on - strand, within PagCFBP13505_RS20995at 1.471 kb on - strand, within PagCFBP13505_RS20995at 1.471 kb on - strand, within PagCFBP13505_RS20995at 1.471 kb on - strand, within PagCFBP13505_RS20995at 1.486 kb on + strand, within PagCFBP13505_RS20995at 1.486 kb on + strand, within PagCFBP13505_RS20995at 1.487 kb on - strand, within PagCFBP13505_RS20995at 1.487 kb on - strand, within PagCFBP13505_RS20995at 1.488 kb on + strand, within PagCFBP13505_RS20995at 1.488 kb on + strand, within PagCFBP13505_RS20995at 1.489 kb on - strand, within PagCFBP13505_RS20995at 1.489 kb on - strand, within PagCFBP13505_RS20995at 1.687 kb on + strandat 1.687 kb on + strandat 1.693 kb on + strandat 1.693 kb on + strandat 1.694 kb on - strandat 1.694 kb on - strandat 1.782 kb on + strandat 1.782 kb on + strandat 1.783 kb on - strandat 1.805 kb on + strandat 1.828 kb on + strandat 1.828 kb on + strandat 1.828 kb on + strandat 1.829 kb on - strandat 1.829 kb on - strandat 1.829 kb on - strandat 1.829 kb on - strandat 1.830 kb on + strandat 1.831 kb on - strandat 1.831 kb on - strandat 1.831 kb on - strandat 1.831 kb on - strandat 1.850 kb on + strandat 1.851 kb on - strandat 1.977 kb on + strand, within PagCFBP13505_RS21000at 1.978 kb on - strand, within PagCFBP13505_RS21000at 2.113 kb on + strand, within PagCFBP13505_RS21000at 2.171 kb on - strand, within PagCFBP13505_RS21000at 2.198 kb on - strand, within PagCFBP13505_RS21000at 2.324 kb on + strand, within PagCFBP13505_RS21000at 2.324 kb on + strand, within PagCFBP13505_RS21000at 2.325 kb on - strand, within PagCFBP13505_RS21000at 2.328 kb on + strand, within PagCFBP13505_RS21000at 2.328 kb on + strand, within PagCFBP13505_RS21000at 2.329 kb on - strand, within PagCFBP13505_RS21000at 2.329 kb on - strand, within PagCFBP13505_RS21000at 2.329 kb on - strand, within PagCFBP13505_RS21000at 2.329 kb on - strand, within PagCFBP13505_RS21000at 2.329 kb on - strand, within PagCFBP13505_RS21000at 2.363 kb on - strand, within PagCFBP13505_RS21000at 2.386 kb on + strand, within PagCFBP13505_RS21000at 2.386 kb on + strand, within PagCFBP13505_RS21000at 2.387 kb on - strand, within PagCFBP13505_RS21000at 2.540 kb on + strand, within PagCFBP13505_RS21000at 2.540 kb on + strand, within PagCFBP13505_RS21000at 2.596 kb on - strand, within PagCFBP13505_RS21000at 2.881 kb on + strand, within PagCFBP13505_RS21000at 2.881 kb on + strand, within PagCFBP13505_RS21000at 2.972 kb on - strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.074 kb on + strandat 3.075 kb on - strandat 3.075 kb on - strandat 3.075 kb on - strandat 3.075 kb on - strandat 3.075 kb on - strandat 3.075 kb on - strandat 3.097 kb on + strandat 3.098 kb on - strandat 3.172 kb on + strandat 3.172 kb on + strandat 3.172 kb on + strandat 3.193 kb on - strandat 3.204 kb on + strandat 3.205 kb on - strandat 3.205 kb on - strandat 3.244 kb on - strand, within PagCFBP13505_RS21005at 3.365 kb on + strand, within PagCFBP13505_RS21005at 3.366 kb on - strand, within PagCFBP13505_RS21005at 3.410 kb on + strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.411 kb on - strand, within PagCFBP13505_RS21005at 3.414 kb on - strand, within PagCFBP13505_RS21005at 3.414 kb on - strand, within PagCFBP13505_RS21005at 3.459 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.578 kb on - strand, within PagCFBP13505_RS21005at 3.582 kb on - strand, within PagCFBP13505_RS21005at 3.598 kb on - strand, within PagCFBP13505_RS21005at 3.915 kb on + strand, within PagCFBP13505_RS21005at 3.990 kb on + strand, within PagCFBP13505_RS21005at 3.990 kb on + strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 3.991 kb on - strand, within PagCFBP13505_RS21005at 4.003 kb on - strand, within PagCFBP13505_RS21005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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862 + PagCFBP13505_RS20990 0.66 -2.6
862 + PagCFBP13505_RS20990 0.66 +0.6
862 + PagCFBP13505_RS20990 0.66 +0.1
863 - PagCFBP13505_RS20990 0.66 -0.8
921 - PagCFBP13505_RS20990 0.71 -0.1
921 - PagCFBP13505_RS20990 0.71 -0.3
989 - PagCFBP13505_RS20990 0.78 +1.7
989 - PagCFBP13505_RS20990 0.78 -0.0
1,000 - PagCFBP13505_RS20990 0.79 -0.2
1,072 - PagCFBP13505_RS20990 0.85 +1.2
1,098 - PagCFBP13505_RS20990 0.88 +0.6
1,098 - PagCFBP13505_RS20990 0.88 -0.2
1,098 - PagCFBP13505_RS20990 0.88 -0.3
1,206 + +1.2
1,206 + -0.4
1,207 - -0.8
1,213 - -0.1
1,213 - -0.2
1,240 - +1.5
1,360 + -0.5
1,361 - -0.8
1,361 - -0.6
1,416 + +0.6
1,423 + -0.2
1,423 + +0.1
1,428 + -0.4
1,428 + -0.6
1,428 + +0.0
1,429 - -0.1
1,470 + PagCFBP13505_RS20995 0.20 +0.2
1,471 - PagCFBP13505_RS20995 0.21 -1.8
1,471 - PagCFBP13505_RS20995 0.21 +1.0
1,471 - PagCFBP13505_RS20995 0.21 -0.1
1,471 - PagCFBP13505_RS20995 0.21 +0.2
1,486 + PagCFBP13505_RS20995 0.28 -0.3
1,486 + PagCFBP13505_RS20995 0.28 -1.3
1,487 - PagCFBP13505_RS20995 0.29 +0.4
1,487 - PagCFBP13505_RS20995 0.29 -0.4
1,488 + PagCFBP13505_RS20995 0.29 +0.2
1,488 + PagCFBP13505_RS20995 0.29 -0.8
1,489 - PagCFBP13505_RS20995 0.30 -1.2
1,489 - PagCFBP13505_RS20995 0.30 -0.1
1,687 + -0.1
1,687 + -0.3
1,693 + +0.2
1,693 + +0.3
1,694 - +0.3
1,694 - +0.2
1,782 + +0.2
1,782 + +0.2
1,783 - -0.4
1,805 + -0.6
1,828 + +0.9
1,828 + +0.4
1,828 + +0.8
1,829 - +0.0
1,829 - -1.9
1,829 - +0.0
1,829 - +0.0
1,830 + -1.1
1,831 - -0.3
1,831 - -0.4
1,831 - -0.5
1,831 - +0.4
1,850 + -0.8
1,851 - -0.9
1,977 + PagCFBP13505_RS21000 0.11 +0.5
1,978 - PagCFBP13505_RS21000 0.11 -0.9
2,113 + PagCFBP13505_RS21000 0.22 +1.5
2,171 - PagCFBP13505_RS21000 0.27 -0.2
2,198 - PagCFBP13505_RS21000 0.29 -0.8
2,324 + PagCFBP13505_RS21000 0.40 -0.1
2,324 + PagCFBP13505_RS21000 0.40 +0.5
2,325 - PagCFBP13505_RS21000 0.40 +0.3
2,328 + PagCFBP13505_RS21000 0.40 -0.1
2,328 + PagCFBP13505_RS21000 0.40 +0.2
2,329 - PagCFBP13505_RS21000 0.40 -0.3
2,329 - PagCFBP13505_RS21000 0.40 -2.1
2,329 - PagCFBP13505_RS21000 0.40 +0.3
2,329 - PagCFBP13505_RS21000 0.40 +0.2
2,329 - PagCFBP13505_RS21000 0.40 +0.7
2,363 - PagCFBP13505_RS21000 0.43 -3.1
2,386 + PagCFBP13505_RS21000 0.45 -0.0
2,386 + PagCFBP13505_RS21000 0.45 +0.4
2,387 - PagCFBP13505_RS21000 0.45 -0.3
2,540 + PagCFBP13505_RS21000 0.58 -1.9
2,540 + PagCFBP13505_RS21000 0.58 +0.4
2,596 - PagCFBP13505_RS21000 0.63 -1.1
2,881 + PagCFBP13505_RS21000 0.87 -0.5
2,881 + PagCFBP13505_RS21000 0.87 -0.2
2,972 - -0.1
3,074 + -0.3
3,074 + -0.1
3,074 + +0.6
3,074 + -0.3
3,074 + -0.5
3,074 + -0.1
3,074 + +0.1
3,074 + +0.2
3,075 - -0.1
3,075 - -1.1
3,075 - -0.8
3,075 - -1.2
3,075 - +1.3
3,075 - +0.2
3,097 + -0.2
3,098 - -0.0
3,172 + +0.2
3,172 + +0.1
3,172 + -0.2
3,193 - +0.2
3,204 + +0.1
3,205 - -0.3
3,205 - +0.8
3,244 - PagCFBP13505_RS21005 0.11 +0.2
3,365 + PagCFBP13505_RS21005 0.23 -0.6
3,366 - PagCFBP13505_RS21005 0.23 -1.3
3,410 + PagCFBP13505_RS21005 0.28 +0.2
3,411 - PagCFBP13505_RS21005 0.28 +0.1
3,411 - PagCFBP13505_RS21005 0.28 +0.4
3,411 - PagCFBP13505_RS21005 0.28 +0.1
3,414 - PagCFBP13505_RS21005 0.28 +0.7
3,414 - PagCFBP13505_RS21005 0.28 +0.1
3,459 - PagCFBP13505_RS21005 0.33 -0.3
3,578 - PagCFBP13505_RS21005 0.45 +0.2
3,578 - PagCFBP13505_RS21005 0.45 +0.9
3,578 - PagCFBP13505_RS21005 0.45 +0.7
3,582 - PagCFBP13505_RS21005 0.46 +0.2
3,598 - PagCFBP13505_RS21005 0.47 +0.9
3,915 + PagCFBP13505_RS21005 0.80 +0.6
3,990 + PagCFBP13505_RS21005 0.88 +0.1
3,990 + PagCFBP13505_RS21005 0.88 +0.2
3,991 - PagCFBP13505_RS21005 0.88 +0.2
3,991 - PagCFBP13505_RS21005 0.88 +0.4
3,991 - PagCFBP13505_RS21005 0.88 -0.4
4,003 - PagCFBP13505_RS21005 0.89 -1.3

Or see this region's nucleotide sequence