Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS17115

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS17110 and PagCFBP13505_RS17115 are separated by 102 nucleotidesPagCFBP13505_RS17115 and PagCFBP13505_RS17120 overlap by 4 nucleotides PagCFBP13505_RS17110: PagCFBP13505_RS17110 - diaminopimelate decarboxylase, at 125,334 to 126,590 _RS17110 PagCFBP13505_RS17115: PagCFBP13505_RS17115 - LysR family transcriptional regulator, at 126,693 to 127,613 _RS17115 PagCFBP13505_RS17120: PagCFBP13505_RS17120 - MFS transporter, at 127,610 to 128,773 _RS17120 Position (kb) 126 127 128Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 125.867 kb on - strand, within PagCFBP13505_RS17110at 126.029 kb on + strand, within PagCFBP13505_RS17110at 126.029 kb on + strand, within PagCFBP13505_RS17110at 126.029 kb on + strand, within PagCFBP13505_RS17110at 126.029 kb on + strand, within PagCFBP13505_RS17110at 126.029 kb on + strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.030 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.034 kb on - strand, within PagCFBP13505_RS17110at 126.062 kb on + strand, within PagCFBP13505_RS17110at 126.085 kb on - strand, within PagCFBP13505_RS17110at 126.102 kb on - strand, within PagCFBP13505_RS17110at 126.221 kb on + strand, within PagCFBP13505_RS17110at 126.221 kb on + strand, within PagCFBP13505_RS17110at 126.411 kb on - strand, within PagCFBP13505_RS17110at 126.416 kb on + strand, within PagCFBP13505_RS17110at 126.499 kb on + strandat 126.499 kb on + strandat 126.619 kb on + strandat 126.620 kb on - strandat 126.681 kb on + strandat 126.682 kb on - strandat 126.682 kb on - strandat 126.682 kb on - strandat 126.704 kb on + strandat 126.704 kb on + strandat 126.704 kb on + strandat 126.705 kb on - strandat 126.705 kb on - strandat 126.705 kb on - strandat 126.717 kb on - strandat 126.835 kb on + strand, within PagCFBP13505_RS17115at 126.836 kb on - strand, within PagCFBP13505_RS17115at 126.854 kb on - strand, within PagCFBP13505_RS17115at 126.918 kb on + strand, within PagCFBP13505_RS17115at 126.919 kb on - strand, within PagCFBP13505_RS17115at 127.042 kb on + strand, within PagCFBP13505_RS17115at 127.122 kb on + strand, within PagCFBP13505_RS17115at 127.122 kb on + strand, within PagCFBP13505_RS17115at 127.123 kb on - strand, within PagCFBP13505_RS17115at 127.123 kb on - strand, within PagCFBP13505_RS17115at 127.127 kb on + strand, within PagCFBP13505_RS17115at 127.204 kb on + strand, within PagCFBP13505_RS17115at 127.205 kb on - strand, within PagCFBP13505_RS17115at 127.205 kb on - strand, within PagCFBP13505_RS17115at 127.205 kb on - strand, within PagCFBP13505_RS17115at 127.235 kb on + strand, within PagCFBP13505_RS17115at 127.273 kb on - strand, within PagCFBP13505_RS17115at 127.273 kb on - strand, within PagCFBP13505_RS17115at 127.469 kb on + strand, within PagCFBP13505_RS17115at 127.469 kb on + strand, within PagCFBP13505_RS17115at 127.723 kb on - strandat 127.723 kb on - strandat 127.778 kb on - strand, within PagCFBP13505_RS17120at 127.832 kb on + strand, within PagCFBP13505_RS17120at 127.832 kb on + strand, within PagCFBP13505_RS17120at 127.833 kb on - strand, within PagCFBP13505_RS17120at 128.112 kb on + strand, within PagCFBP13505_RS17120at 128.113 kb on - strand, within PagCFBP13505_RS17120at 128.113 kb on - strand, within PagCFBP13505_RS17120at 128.230 kb on + strand, within PagCFBP13505_RS17120at 128.230 kb on + strand, within PagCFBP13505_RS17120at 128.231 kb on - strand, within PagCFBP13505_RS17120at 128.231 kb on - strand, within PagCFBP13505_RS17120at 128.231 kb on - strand, within PagCFBP13505_RS17120at 128.231 kb on - strand, within PagCFBP13505_RS17120at 128.360 kb on + strand, within PagCFBP13505_RS17120at 128.500 kb on + strand, within PagCFBP13505_RS17120at 128.501 kb on - strand, within PagCFBP13505_RS17120at 128.502 kb on + strand, within PagCFBP13505_RS17120at 128.502 kb on + strand, within PagCFBP13505_RS17120at 128.502 kb on + strand, within PagCFBP13505_RS17120at 128.502 kb on + strand, within PagCFBP13505_RS17120at 128.503 kb on - strand, within PagCFBP13505_RS17120at 128.508 kb on + strand, within PagCFBP13505_RS17120at 128.539 kb on + strand, within PagCFBP13505_RS17120at 128.539 kb on + strand, within PagCFBP13505_RS17120at 128.540 kb on - strand, within PagCFBP13505_RS17120at 128.540 kb on - strand, within PagCFBP13505_RS17120at 128.540 kb on - strand, within PagCFBP13505_RS17120at 128.543 kb on + strand, within PagCFBP13505_RS17120at 128.544 kb on - strand, within PagCFBP13505_RS17120at 128.544 kb on - strand, within PagCFBP13505_RS17120at 128.544 kb on - strand, within PagCFBP13505_RS17120at 128.544 kb on - strand, within PagCFBP13505_RS17120at 128.603 kb on - strand, within PagCFBP13505_RS17120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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125,867 - PagCFBP13505_RS17110 0.42 -5.1
126,029 + PagCFBP13505_RS17110 0.55 -2.8
126,029 + PagCFBP13505_RS17110 0.55 -1.8
126,029 + PagCFBP13505_RS17110 0.55 -3.5
126,029 + PagCFBP13505_RS17110 0.55 -5.1
126,029 + PagCFBP13505_RS17110 0.55 -4.3
126,030 - PagCFBP13505_RS17110 0.55 -4.7
126,030 - PagCFBP13505_RS17110 0.55 -4.8
126,030 - PagCFBP13505_RS17110 0.55 -3.2
126,030 - PagCFBP13505_RS17110 0.55 -3.2
126,030 - PagCFBP13505_RS17110 0.55 -3.7
126,030 - PagCFBP13505_RS17110 0.55 -2.8
126,030 - PagCFBP13505_RS17110 0.55 -2.9
126,030 - PagCFBP13505_RS17110 0.55 -4.0
126,030 - PagCFBP13505_RS17110 0.55 -5.6
126,030 - PagCFBP13505_RS17110 0.55 -2.9
126,030 - PagCFBP13505_RS17110 0.55 -3.3
126,030 - PagCFBP13505_RS17110 0.55 -3.9
126,030 - PagCFBP13505_RS17110 0.55 -4.7
126,030 - PagCFBP13505_RS17110 0.55 -4.5
126,030 - PagCFBP13505_RS17110 0.55 -5.0
126,030 - PagCFBP13505_RS17110 0.55 -4.2
126,030 - PagCFBP13505_RS17110 0.55 -4.0
126,030 - PagCFBP13505_RS17110 0.55 -2.6
126,034 - PagCFBP13505_RS17110 0.56 -2.8
126,034 - PagCFBP13505_RS17110 0.56 -2.3
126,034 - PagCFBP13505_RS17110 0.56 -2.1
126,034 - PagCFBP13505_RS17110 0.56 -3.7
126,034 - PagCFBP13505_RS17110 0.56 -2.5
126,034 - PagCFBP13505_RS17110 0.56 -5.0
126,034 - PagCFBP13505_RS17110 0.56 -5.8
126,034 - PagCFBP13505_RS17110 0.56 -3.9
126,034 - PagCFBP13505_RS17110 0.56 -3.9
126,062 + PagCFBP13505_RS17110 0.58 -3.7
126,085 - PagCFBP13505_RS17110 0.60 -3.5
126,102 - PagCFBP13505_RS17110 0.61 -2.8
126,221 + PagCFBP13505_RS17110 0.71 -3.6
126,221 + PagCFBP13505_RS17110 0.71 -3.1
126,411 - PagCFBP13505_RS17110 0.86 -2.3
126,416 + PagCFBP13505_RS17110 0.86 -6.1
126,499 + -3.1
126,499 + -3.1
126,619 + -0.3
126,620 - -0.2
126,681 + -0.5
126,682 - +0.2
126,682 - -0.7
126,682 - +0.2
126,704 + -1.0
126,704 + -0.1
126,704 + -1.1
126,705 - +1.2
126,705 - -1.4
126,705 - +0.2
126,717 - -0.1
126,835 + PagCFBP13505_RS17115 0.15 -0.1
126,836 - PagCFBP13505_RS17115 0.16 -0.6
126,854 - PagCFBP13505_RS17115 0.17 -0.8
126,918 + PagCFBP13505_RS17115 0.24 -0.4
126,919 - PagCFBP13505_RS17115 0.25 -0.5
127,042 + PagCFBP13505_RS17115 0.38 -0.3
127,122 + PagCFBP13505_RS17115 0.47 -0.6
127,122 + PagCFBP13505_RS17115 0.47 -0.2
127,123 - PagCFBP13505_RS17115 0.47 -0.8
127,123 - PagCFBP13505_RS17115 0.47 +0.2
127,127 + PagCFBP13505_RS17115 0.47 -0.9
127,204 + PagCFBP13505_RS17115 0.55 -0.3
127,205 - PagCFBP13505_RS17115 0.56 -0.5
127,205 - PagCFBP13505_RS17115 0.56 +0.2
127,205 - PagCFBP13505_RS17115 0.56 -0.7
127,235 + PagCFBP13505_RS17115 0.59 +0.7
127,273 - PagCFBP13505_RS17115 0.63 -1.2
127,273 - PagCFBP13505_RS17115 0.63 -0.3
127,469 + PagCFBP13505_RS17115 0.84 -3.4
127,469 + PagCFBP13505_RS17115 0.84 -0.3
127,723 - +0.2
127,723 - +0.7
127,778 - PagCFBP13505_RS17120 0.14 +0.3
127,832 + PagCFBP13505_RS17120 0.19 -0.3
127,832 + PagCFBP13505_RS17120 0.19 -0.0
127,833 - PagCFBP13505_RS17120 0.19 -2.2
128,112 + PagCFBP13505_RS17120 0.43 -0.4
128,113 - PagCFBP13505_RS17120 0.43 +0.6
128,113 - PagCFBP13505_RS17120 0.43 +0.1
128,230 + PagCFBP13505_RS17120 0.53 -0.2
128,230 + PagCFBP13505_RS17120 0.53 -0.2
128,231 - PagCFBP13505_RS17120 0.53 +0.2
128,231 - PagCFBP13505_RS17120 0.53 -0.1
128,231 - PagCFBP13505_RS17120 0.53 +0.2
128,231 - PagCFBP13505_RS17120 0.53 -0.3
128,360 + PagCFBP13505_RS17120 0.64 +2.1
128,500 + PagCFBP13505_RS17120 0.76 +0.3
128,501 - PagCFBP13505_RS17120 0.77 -0.0
128,502 + PagCFBP13505_RS17120 0.77 -0.4
128,502 + PagCFBP13505_RS17120 0.77 -0.2
128,502 + PagCFBP13505_RS17120 0.77 +0.1
128,502 + PagCFBP13505_RS17120 0.77 -0.2
128,503 - PagCFBP13505_RS17120 0.77 +0.7
128,508 + PagCFBP13505_RS17120 0.77 +0.1
128,539 + PagCFBP13505_RS17120 0.80 +0.7
128,539 + PagCFBP13505_RS17120 0.80 -0.1
128,540 - PagCFBP13505_RS17120 0.80 -0.1
128,540 - PagCFBP13505_RS17120 0.80 -0.2
128,540 - PagCFBP13505_RS17120 0.80 -0.5
128,543 + PagCFBP13505_RS17120 0.80 +0.1
128,544 - PagCFBP13505_RS17120 0.80 +0.1
128,544 - PagCFBP13505_RS17120 0.80 +0.4
128,544 - PagCFBP13505_RS17120 0.80 -0.3
128,544 - PagCFBP13505_RS17120 0.80 +0.1
128,603 - PagCFBP13505_RS17120 0.85 +0.1

Or see this region's nucleotide sequence