Strain Fitness in Pantoea agglomerans CFBP13505 P0401 around PagCFBP13505_RS03190

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPagCFBP13505_RS03185 and PagCFBP13505_RS03190 are separated by 291 nucleotidesPagCFBP13505_RS03190 and PagCFBP13505_RS03195 are separated by 190 nucleotidesPagCFBP13505_RS03195 and PagCFBP13505_RS03200 are separated by 371 nucleotides PagCFBP13505_RS03185: PagCFBP13505_RS03185 - iron-containing alcohol dehydrogenase, at 32,590 to 33,738 _RS03185 PagCFBP13505_RS03190: PagCFBP13505_RS03190 - gluconate transporter, at 34,030 to 35,346 _RS03190 PagCFBP13505_RS03195: PagCFBP13505_RS03195 - hypothetical protein, at 35,537 to 35,782 _RS03195 PagCFBP13505_RS03200: PagCFBP13505_RS03200 - hypothetical protein, at 36,154 to 36,360 _RS03200 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1at 33.128 kb on + strand, within PagCFBP13505_RS03185at 33.129 kb on - strand, within PagCFBP13505_RS03185at 33.129 kb on - strand, within PagCFBP13505_RS03185at 33.129 kb on - strand, within PagCFBP13505_RS03185at 33.148 kb on - strand, within PagCFBP13505_RS03185at 33.260 kb on - strand, within PagCFBP13505_RS03185at 33.415 kb on + strand, within PagCFBP13505_RS03185at 33.416 kb on - strand, within PagCFBP13505_RS03185at 33.448 kb on + strand, within PagCFBP13505_RS03185at 33.448 kb on + strand, within PagCFBP13505_RS03185at 33.558 kb on + strand, within PagCFBP13505_RS03185at 33.558 kb on + strand, within PagCFBP13505_RS03185at 33.559 kb on - strand, within PagCFBP13505_RS03185at 33.559 kb on - strand, within PagCFBP13505_RS03185at 33.562 kb on - strand, within PagCFBP13505_RS03185at 33.562 kb on - strand, within PagCFBP13505_RS03185at 33.562 kb on - strand, within PagCFBP13505_RS03185at 33.562 kb on - strand, within PagCFBP13505_RS03185at 33.562 kb on - strand, within PagCFBP13505_RS03185at 33.593 kb on + strand, within PagCFBP13505_RS03185at 33.593 kb on + strand, within PagCFBP13505_RS03185at 33.593 kb on + strand, within PagCFBP13505_RS03185at 33.637 kb on - strandat 33.637 kb on - strandat 33.708 kb on + strandat 33.713 kb on + strandat 33.713 kb on + strandat 33.714 kb on - strandat 33.935 kb on + strandat 33.935 kb on + strandat 33.935 kb on + strandat 33.935 kb on + strandat 33.936 kb on - strandat 33.936 kb on - strandat 33.936 kb on - strandat 33.936 kb on - strandat 33.944 kb on + strandat 33.982 kb on - strandat 34.029 kb on + strandat 34.029 kb on + strandat 34.029 kb on + strandat 34.042 kb on + strandat 34.043 kb on - strandat 34.043 kb on - strandat 34.104 kb on + strandat 34.161 kb on + strandat 34.162 kb on - strand, within PagCFBP13505_RS03190at 34.162 kb on - strand, within PagCFBP13505_RS03190at 34.171 kb on - strand, within PagCFBP13505_RS03190at 34.278 kb on + strand, within PagCFBP13505_RS03190at 34.278 kb on + strand, within PagCFBP13505_RS03190at 34.311 kb on + strand, within PagCFBP13505_RS03190at 34.311 kb on + strand, within PagCFBP13505_RS03190at 34.311 kb on + strand, within PagCFBP13505_RS03190at 34.317 kb on + strand, within PagCFBP13505_RS03190at 34.385 kb on + strand, within PagCFBP13505_RS03190at 34.385 kb on + strand, within PagCFBP13505_RS03190at 34.386 kb on - strand, within PagCFBP13505_RS03190at 34.386 kb on - strand, within PagCFBP13505_RS03190at 34.400 kb on + strand, within PagCFBP13505_RS03190at 34.400 kb on + strand, within PagCFBP13505_RS03190at 34.401 kb on - strand, within PagCFBP13505_RS03190at 34.441 kb on + strand, within PagCFBP13505_RS03190at 34.442 kb on - strand, within PagCFBP13505_RS03190at 34.546 kb on - strand, within PagCFBP13505_RS03190at 34.546 kb on - strand, within PagCFBP13505_RS03190at 34.556 kb on + strand, within PagCFBP13505_RS03190at 34.556 kb on + strand, within PagCFBP13505_RS03190at 34.556 kb on + strand, within PagCFBP13505_RS03190at 34.557 kb on - strand, within PagCFBP13505_RS03190at 34.654 kb on + strand, within PagCFBP13505_RS03190at 34.655 kb on - strand, within PagCFBP13505_RS03190at 34.657 kb on - strand, within PagCFBP13505_RS03190at 34.721 kb on + strand, within PagCFBP13505_RS03190at 34.721 kb on + strand, within PagCFBP13505_RS03190at 34.722 kb on - strand, within PagCFBP13505_RS03190at 34.899 kb on + strand, within PagCFBP13505_RS03190at 34.995 kb on + strand, within PagCFBP13505_RS03190at 34.996 kb on - strand, within PagCFBP13505_RS03190at 34.999 kb on + strand, within PagCFBP13505_RS03190at 35.000 kb on - strand, within PagCFBP13505_RS03190at 35.000 kb on - strand, within PagCFBP13505_RS03190at 35.000 kb on - strand, within PagCFBP13505_RS03190at 35.000 kb on - strand, within PagCFBP13505_RS03190at 35.022 kb on + strand, within PagCFBP13505_RS03190at 35.044 kb on - strand, within PagCFBP13505_RS03190at 35.073 kb on + strand, within PagCFBP13505_RS03190at 35.096 kb on + strand, within PagCFBP13505_RS03190at 35.240 kb on - strandat 35.295 kb on + strandat 35.453 kb on + strandat 35.623 kb on + strand, within PagCFBP13505_RS03195at 35.623 kb on + strand, within PagCFBP13505_RS03195at 35.623 kb on + strand, within PagCFBP13505_RS03195at 35.649 kb on + strand, within PagCFBP13505_RS03195at 35.650 kb on - strand, within PagCFBP13505_RS03195at 35.650 kb on - strand, within PagCFBP13505_RS03195at 35.650 kb on - strand, within PagCFBP13505_RS03195at 35.767 kb on + strandat 35.768 kb on - strandat 35.768 kb on - strandat 35.770 kb on + strandat 35.770 kb on + strandat 35.770 kb on + strandat 35.771 kb on - strandat 35.783 kb on - strandat 35.783 kb on - strandat 35.783 kb on - strandat 35.886 kb on + strandat 35.909 kb on - strandat 35.924 kb on + strandat 35.963 kb on + strandat 35.996 kb on + strandat 36.018 kb on + strandat 36.123 kb on + strandat 36.124 kb on - strandat 36.124 kb on - strandat 36.156 kb on - strandat 36.156 kb on - strandat 36.219 kb on + strand, within PagCFBP13505_RS03200at 36.220 kb on - strand, within PagCFBP13505_RS03200at 36.256 kb on - strand, within PagCFBP13505_RS03200at 36.256 kb on - strand, within PagCFBP13505_RS03200at 36.260 kb on + strand, within PagCFBP13505_RS03200at 36.261 kb on - strand, within PagCFBP13505_RS03200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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33,128 + PagCFBP13505_RS03185 0.47 -0.4
33,129 - PagCFBP13505_RS03185 0.47 +0.7
33,129 - PagCFBP13505_RS03185 0.47 -0.1
33,129 - PagCFBP13505_RS03185 0.47 +0.4
33,148 - PagCFBP13505_RS03185 0.49 +0.2
33,260 - PagCFBP13505_RS03185 0.58 +0.2
33,415 + PagCFBP13505_RS03185 0.72 +0.5
33,416 - PagCFBP13505_RS03185 0.72 -1.4
33,448 + PagCFBP13505_RS03185 0.75 +0.6
33,448 + PagCFBP13505_RS03185 0.75 -0.4
33,558 + PagCFBP13505_RS03185 0.84 -1.2
33,558 + PagCFBP13505_RS03185 0.84 +0.7
33,559 - PagCFBP13505_RS03185 0.84 -1.0
33,559 - PagCFBP13505_RS03185 0.84 -0.0
33,562 - PagCFBP13505_RS03185 0.85 +0.9
33,562 - PagCFBP13505_RS03185 0.85 +1.4
33,562 - PagCFBP13505_RS03185 0.85 +0.4
33,562 - PagCFBP13505_RS03185 0.85 +0.8
33,562 - PagCFBP13505_RS03185 0.85 -0.5
33,593 + PagCFBP13505_RS03185 0.87 +1.3
33,593 + PagCFBP13505_RS03185 0.87 +0.2
33,593 + PagCFBP13505_RS03185 0.87 -0.8
33,637 - -0.2
33,637 - +0.7
33,708 + +0.4
33,713 + +0.4
33,713 + -1.3
33,714 - +0.5
33,935 + -0.4
33,935 + +0.7
33,935 + +0.9
33,935 + -0.1
33,936 - +0.6
33,936 - -0.5
33,936 - -0.4
33,936 - -1.6
33,944 + -2.1
33,982 - +0.6
34,029 + -1.1
34,029 + +0.7
34,029 + +0.2
34,042 + -0.1
34,043 - +0.2
34,043 - +0.2
34,104 + -0.3
34,161 + -0.2
34,162 - PagCFBP13505_RS03190 0.10 -0.1
34,162 - PagCFBP13505_RS03190 0.10 +0.5
34,171 - PagCFBP13505_RS03190 0.11 +0.7
34,278 + PagCFBP13505_RS03190 0.19 -0.9
34,278 + PagCFBP13505_RS03190 0.19 -0.6
34,311 + PagCFBP13505_RS03190 0.21 -0.4
34,311 + PagCFBP13505_RS03190 0.21 +0.1
34,311 + PagCFBP13505_RS03190 0.21 +0.4
34,317 + PagCFBP13505_RS03190 0.22 +1.2
34,385 + PagCFBP13505_RS03190 0.27 -1.1
34,385 + PagCFBP13505_RS03190 0.27 -0.5
34,386 - PagCFBP13505_RS03190 0.27 -0.2
34,386 - PagCFBP13505_RS03190 0.27 -0.8
34,400 + PagCFBP13505_RS03190 0.28 +0.4
34,400 + PagCFBP13505_RS03190 0.28 +0.7
34,401 - PagCFBP13505_RS03190 0.28 +0.3
34,441 + PagCFBP13505_RS03190 0.31 +0.2
34,442 - PagCFBP13505_RS03190 0.31 -0.1
34,546 - PagCFBP13505_RS03190 0.39 +0.5
34,546 - PagCFBP13505_RS03190 0.39 +0.5
34,556 + PagCFBP13505_RS03190 0.40 +0.7
34,556 + PagCFBP13505_RS03190 0.40 +0.2
34,556 + PagCFBP13505_RS03190 0.40 -0.3
34,557 - PagCFBP13505_RS03190 0.40 -0.1
34,654 + PagCFBP13505_RS03190 0.47 -0.0
34,655 - PagCFBP13505_RS03190 0.47 -1.1
34,657 - PagCFBP13505_RS03190 0.48 -1.0
34,721 + PagCFBP13505_RS03190 0.52 -0.3
34,721 + PagCFBP13505_RS03190 0.52 +0.9
34,722 - PagCFBP13505_RS03190 0.53 -0.0
34,899 + PagCFBP13505_RS03190 0.66 +0.0
34,995 + PagCFBP13505_RS03190 0.73 -0.4
34,996 - PagCFBP13505_RS03190 0.73 -0.0
34,999 + PagCFBP13505_RS03190 0.74 -0.4
35,000 - PagCFBP13505_RS03190 0.74 +0.3
35,000 - PagCFBP13505_RS03190 0.74 -0.2
35,000 - PagCFBP13505_RS03190 0.74 -1.8
35,000 - PagCFBP13505_RS03190 0.74 +0.1
35,022 + PagCFBP13505_RS03190 0.75 -0.5
35,044 - PagCFBP13505_RS03190 0.77 +0.4
35,073 + PagCFBP13505_RS03190 0.79 -0.7
35,096 + PagCFBP13505_RS03190 0.81 -0.5
35,240 - +0.4
35,295 + -1.0
35,453 + -0.4
35,623 + PagCFBP13505_RS03195 0.35 -0.4
35,623 + PagCFBP13505_RS03195 0.35 +0.4
35,623 + PagCFBP13505_RS03195 0.35 +0.0
35,649 + PagCFBP13505_RS03195 0.46 -1.1
35,650 - PagCFBP13505_RS03195 0.46 +0.1
35,650 - PagCFBP13505_RS03195 0.46 +0.0
35,650 - PagCFBP13505_RS03195 0.46 +0.6
35,767 + -1.5
35,768 - -1.2
35,768 - -0.4
35,770 + +0.3
35,770 + -0.2
35,770 + -0.5
35,771 - -1.8
35,783 - -0.5
35,783 - +0.8
35,783 - -0.8
35,886 + -2.3
35,909 - +0.4
35,924 + +0.3
35,963 + +0.8
35,996 + -0.3
36,018 + -0.8
36,123 + -0.5
36,124 - -3.1
36,124 - +0.7
36,156 - -1.8
36,156 - +0.5
36,219 + PagCFBP13505_RS03200 0.31 +0.2
36,220 - PagCFBP13505_RS03200 0.32 -0.6
36,256 - PagCFBP13505_RS03200 0.49 -0.1
36,256 - PagCFBP13505_RS03200 0.49 -0.0
36,260 + PagCFBP13505_RS03200 0.51 +1.5
36,261 - PagCFBP13505_RS03200 0.52 +0.0

Or see this region's nucleotide sequence