Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PagCFBP13505_RS13375 and PagCFBP13505_RS13380 overlap by 23 nucleotides PagCFBP13505_RS13380 and PagCFBP13505_RS13385 are separated by 36 nucleotides PagCFBP13505_RS13385 and PagCFBP13505_RS13390 are separated by 98 nucleotides
PagCFBP13505_RS13375: PagCFBP13505_RS13375 - DNA/RNA nuclease SfsA, at 124,539 to 125,243
_RS13375
PagCFBP13505_RS13380: PagCFBP13505_RS13380 - RNA 2',3'-cyclic phosphodiesterase, at 125,221 to 125,778
_RS13380
PagCFBP13505_RS13385: PagCFBP13505_RS13385 - ATP-dependent helicase HrpB, at 125,815 to 128,298
_RS13385
PagCFBP13505_RS13390: PagCFBP13505_RS13390 - bifunctional glycosyl transferase/transpeptidase, at 128,397 to 130,937
_RS13390
Position (kb) 125
126
127
128
129 Strain fitness (log2 ratio) -2
-1
0
1 at 124.846 kb on + strand, within PagCFBP13505_RS13375 at 124.846 kb on + strand, within PagCFBP13505_RS13375 at 124.847 kb on - strand, within PagCFBP13505_RS13375 at 124.847 kb on - strand, within PagCFBP13505_RS13375 at 124.847 kb on - strand, within PagCFBP13505_RS13375 at 124.847 kb on - strand, within PagCFBP13505_RS13375 at 124.906 kb on + strand, within PagCFBP13505_RS13375 at 124.906 kb on + strand, within PagCFBP13505_RS13375 at 124.932 kb on - strand, within PagCFBP13505_RS13375 at 125.000 kb on + strand, within PagCFBP13505_RS13375 at 125.223 kb on - strand at 125.261 kb on - strand at 125.395 kb on + strand, within PagCFBP13505_RS13380 at 125.578 kb on + strand, within PagCFBP13505_RS13380 at 125.579 kb on - strand, within PagCFBP13505_RS13380 at 125.579 kb on - strand, within PagCFBP13505_RS13380 at 125.583 kb on + strand, within PagCFBP13505_RS13380 at 125.584 kb on - strand, within PagCFBP13505_RS13380 at 125.761 kb on + strand at 125.795 kb on + strand at 125.811 kb on + strand at 125.811 kb on + strand at 125.812 kb on - strand at 125.812 kb on - strand at 125.828 kb on + strand at 125.829 kb on - strand at 126.278 kb on + strand, within PagCFBP13505_RS13385 at 126.278 kb on + strand, within PagCFBP13505_RS13385 at 126.278 kb on + strand, within PagCFBP13505_RS13385 at 126.278 kb on + strand, within PagCFBP13505_RS13385 at 126.279 kb on - strand, within PagCFBP13505_RS13385 at 126.279 kb on - strand, within PagCFBP13505_RS13385 at 126.279 kb on - strand, within PagCFBP13505_RS13385 at 126.279 kb on - strand, within PagCFBP13505_RS13385 at 126.279 kb on - strand, within PagCFBP13505_RS13385 at 126.304 kb on - strand, within PagCFBP13505_RS13385 at 126.589 kb on + strand, within PagCFBP13505_RS13385 at 126.672 kb on + strand, within PagCFBP13505_RS13385 at 127.287 kb on + strand, within PagCFBP13505_RS13385 at 127.443 kb on + strand, within PagCFBP13505_RS13385 at 127.472 kb on + strand, within PagCFBP13505_RS13385 at 127.577 kb on + strand, within PagCFBP13505_RS13385 at 127.578 kb on - strand, within PagCFBP13505_RS13385 at 127.578 kb on - strand, within PagCFBP13505_RS13385 at 127.923 kb on - strand, within PagCFBP13505_RS13385 at 127.959 kb on + strand, within PagCFBP13505_RS13385 at 127.978 kb on + strand, within PagCFBP13505_RS13385 at 127.978 kb on + strand, within PagCFBP13505_RS13385 at 127.979 kb on - strand, within PagCFBP13505_RS13385 at 127.979 kb on - strand, within PagCFBP13505_RS13385 at 128.015 kb on - strand, within PagCFBP13505_RS13385 at 128.223 kb on + strand at 128.352 kb on + strand at 128.353 kb on - strand at 128.357 kb on + strand at 128.371 kb on + strand at 128.395 kb on + strand at 128.396 kb on - strand at 128.396 kb on - strand at 128.514 kb on - strand at 128.546 kb on + strand at 128.546 kb on + strand at 128.547 kb on - strand at 128.552 kb on + strand at 128.553 kb on - strand at 128.553 kb on - strand at 128.553 kb on - strand at 128.553 kb on - strand at 128.649 kb on + strand at 128.650 kb on - strand at 128.650 kb on - strand at 128.684 kb on + strand, within PagCFBP13505_RS13390 at 128.685 kb on - strand, within PagCFBP13505_RS13390 at 128.749 kb on - strand, within PagCFBP13505_RS13390 at 128.807 kb on + strand, within PagCFBP13505_RS13390 at 128.886 kb on - strand, within PagCFBP13505_RS13390 at 128.886 kb on - strand, within PagCFBP13505_RS13390 at 128.922 kb on - strand, within PagCFBP13505_RS13390 at 129.075 kb on - strand, within PagCFBP13505_RS13390 at 129.075 kb on - strand, within PagCFBP13505_RS13390 at 129.129 kb on + strand, within PagCFBP13505_RS13390 at 129.130 kb on - strand, within PagCFBP13505_RS13390 at 129.130 kb on - strand, within PagCFBP13505_RS13390 at 129.130 kb on - strand, within PagCFBP13505_RS13390 at 129.252 kb on - strand, within PagCFBP13505_RS13390 at 129.268 kb on - strand, within PagCFBP13505_RS13390 at 129.270 kb on - strand, within PagCFBP13505_RS13390 at 129.295 kb on - strand, within PagCFBP13505_RS13390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 124,846 + PagCFBP13505_RS13375 0.44 +0.8 124,846 + PagCFBP13505_RS13375 0.44 +0.5 124,847 - PagCFBP13505_RS13375 0.44 +0.4 124,847 - PagCFBP13505_RS13375 0.44 +0.1 124,847 - PagCFBP13505_RS13375 0.44 -0.0 124,847 - PagCFBP13505_RS13375 0.44 +0.5 124,906 + PagCFBP13505_RS13375 0.52 +0.7 124,906 + PagCFBP13505_RS13375 0.52 +0.6 124,932 - PagCFBP13505_RS13375 0.56 +0.6 125,000 + PagCFBP13505_RS13375 0.65 +0.4 125,223 - +0.6 125,261 - -0.6 125,395 + PagCFBP13505_RS13380 0.31 -0.1 125,578 + PagCFBP13505_RS13380 0.64 -0.6 125,579 - PagCFBP13505_RS13380 0.64 +0.0 125,579 - PagCFBP13505_RS13380 0.64 +0.4 125,583 + PagCFBP13505_RS13380 0.65 +0.2 125,584 - PagCFBP13505_RS13380 0.65 +0.8 125,761 + +0.4 125,795 + -0.4 125,811 + +0.1 125,811 + -0.3 125,812 - +0.1 125,812 - +0.6 125,828 + +0.0 125,829 - +1.6 126,278 + PagCFBP13505_RS13385 0.19 -0.3 126,278 + PagCFBP13505_RS13385 0.19 -0.0 126,278 + PagCFBP13505_RS13385 0.19 +0.6 126,278 + PagCFBP13505_RS13385 0.19 -0.1 126,279 - PagCFBP13505_RS13385 0.19 +0.7 126,279 - PagCFBP13505_RS13385 0.19 -0.1 126,279 - PagCFBP13505_RS13385 0.19 -0.0 126,279 - PagCFBP13505_RS13385 0.19 +0.1 126,279 - PagCFBP13505_RS13385 0.19 -0.6 126,304 - PagCFBP13505_RS13385 0.20 +0.1 126,589 + PagCFBP13505_RS13385 0.31 -0.7 126,672 + PagCFBP13505_RS13385 0.35 -0.0 127,287 + PagCFBP13505_RS13385 0.59 -1.3 127,443 + PagCFBP13505_RS13385 0.66 -0.3 127,472 + PagCFBP13505_RS13385 0.67 +0.8 127,577 + PagCFBP13505_RS13385 0.71 -0.6 127,578 - PagCFBP13505_RS13385 0.71 +0.2 127,578 - PagCFBP13505_RS13385 0.71 +0.0 127,923 - PagCFBP13505_RS13385 0.85 +0.4 127,959 + PagCFBP13505_RS13385 0.86 -0.0 127,978 + PagCFBP13505_RS13385 0.87 -0.4 127,978 + PagCFBP13505_RS13385 0.87 +0.8 127,979 - PagCFBP13505_RS13385 0.87 +1.5 127,979 - PagCFBP13505_RS13385 0.87 +0.1 128,015 - PagCFBP13505_RS13385 0.89 +1.1 128,223 + -0.2 128,352 + +1.2 128,353 - -0.3 128,357 + -2.0 128,371 + -0.3 128,395 + +0.1 128,396 - -0.8 128,396 - -1.3 128,514 - -0.1 128,546 + -0.1 128,546 + +1.2 128,547 - -0.1 128,552 + +0.6 128,553 - +0.2 128,553 - -0.6 128,553 - +1.2 128,553 - -1.2 128,649 + -1.5 128,650 - -0.4 128,650 - +0.2 128,684 + PagCFBP13505_RS13390 0.11 +0.8 128,685 - PagCFBP13505_RS13390 0.11 -0.2 128,749 - PagCFBP13505_RS13390 0.14 +1.0 128,807 + PagCFBP13505_RS13390 0.16 +0.4 128,886 - PagCFBP13505_RS13390 0.19 -0.8 128,886 - PagCFBP13505_RS13390 0.19 -0.1 128,922 - PagCFBP13505_RS13390 0.21 +0.4 129,075 - PagCFBP13505_RS13390 0.27 -0.7 129,075 - PagCFBP13505_RS13390 0.27 +0.3 129,129 + PagCFBP13505_RS13390 0.29 +0.1 129,130 - PagCFBP13505_RS13390 0.29 +0.1 129,130 - PagCFBP13505_RS13390 0.29 -2.1 129,130 - PagCFBP13505_RS13390 0.29 +0.0 129,252 - PagCFBP13505_RS13390 0.34 +0.1 129,268 - PagCFBP13505_RS13390 0.34 -0.1 129,270 - PagCFBP13505_RS13390 0.34 +0.7 129,295 - PagCFBP13505_RS13390 0.35 -0.6
Or see this region's nucleotide sequence