Experiment: MHII_biocarbonate_serum_Chelated; 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS19135 and RR41_RS00565 are separated by 102 nucleotides RR41_RS00565 and RR41_RS00570 overlap by 1 nucleotides RR41_RS00570 and RR41_RS00575 are separated by 141 nucleotides
RR41_RS19135: RR41_RS19135 - IS4-like element ISAba1 family transposase, at 120,775 to 121,866
_RS19135
RR41_RS00565: RR41_RS00565 - aminoglycoside O-phosphotransferase APH(3'')-Ib, at 121,969 to 122,772
_RS00565
RR41_RS00570: RR41_RS00570 - aminoglycoside O-phosphotransferase APH(6)-Id, at 122,772 to 123,608
_RS00570
RR41_RS00575: RR41_RS00575 - hypothetical protein, at 123,750 to 124,172
_RS00575
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 120.978 kb on - strand, within RR41_RS19135 at 121.980 kb on + strand at 121.984 kb on - strand at 122.428 kb on - strand, within RR41_RS00565 at 122.428 kb on - strand, within RR41_RS00565 at 122.468 kb on + strand, within RR41_RS00565 at 122.499 kb on + strand, within RR41_RS00565 at 122.551 kb on - strand, within RR41_RS00565 at 122.551 kb on - strand, within RR41_RS00565 at 122.691 kb on - strand, within RR41_RS00565 at 122.700 kb on - strand at 122.700 kb on - strand at 122.740 kb on + strand at 122.740 kb on + strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.909 kb on - strand, within RR41_RS00570 at 122.909 kb on - strand, within RR41_RS00570 at 122.943 kb on + strand, within RR41_RS00570 at 122.944 kb on - strand, within RR41_RS00570 at 122.950 kb on + strand, within RR41_RS00570 at 123.015 kb on + strand, within RR41_RS00570 at 123.091 kb on + strand, within RR41_RS00570 at 123.092 kb on - strand, within RR41_RS00570 at 123.105 kb on + strand, within RR41_RS00570 at 123.216 kb on + strand, within RR41_RS00570 at 123.216 kb on + strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.234 kb on - strand, within RR41_RS00570 at 123.277 kb on + strand, within RR41_RS00570 at 123.278 kb on - strand, within RR41_RS00570 at 123.278 kb on - strand, within RR41_RS00570 at 123.334 kb on + strand, within RR41_RS00570 at 123.334 kb on + strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.380 kb on + strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.508 kb on - strand, within RR41_RS00570 at 123.562 kb on + strand at 123.604 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.610 kb on + strand at 123.661 kb on + strand at 123.661 kb on + strand at 123.685 kb on - strand at 123.724 kb on - strand at 123.724 kb on - strand at 123.749 kb on + strand at 123.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 37C remove 120,978 - RR41_RS19135 0.19 -1.7 121,980 + +0.2 121,984 - -2.6 122,428 - RR41_RS00565 0.57 +0.4 122,428 - RR41_RS00565 0.57 -3.2 122,468 + RR41_RS00565 0.62 +0.6 122,499 + RR41_RS00565 0.66 -1.2 122,551 - RR41_RS00565 0.72 -0.4 122,551 - RR41_RS00565 0.72 -1.4 122,691 - RR41_RS00565 0.90 -1.4 122,700 - +0.4 122,700 - -0.9 122,740 + -0.8 122,740 + -0.8 122,741 - -0.6 122,741 - -0.8 122,741 - -1.2 122,741 - +0.4 122,909 - RR41_RS00570 0.16 -0.6 122,909 - RR41_RS00570 0.16 +1.4 122,943 + RR41_RS00570 0.20 +0.1 122,944 - RR41_RS00570 0.21 -1.2 122,950 + RR41_RS00570 0.21 +0.1 123,015 + RR41_RS00570 0.29 -0.8 123,091 + RR41_RS00570 0.38 +0.9 123,092 - RR41_RS00570 0.38 -2.9 123,105 + RR41_RS00570 0.40 -2.4 123,216 + RR41_RS00570 0.53 -1.9 123,216 + RR41_RS00570 0.53 -1.4 123,217 - RR41_RS00570 0.53 -1.2 123,217 - RR41_RS00570 0.53 -0.4 123,217 - RR41_RS00570 0.53 -2.6 123,217 - RR41_RS00570 0.53 +0.8 123,234 - RR41_RS00570 0.55 -1.6 123,277 + RR41_RS00570 0.60 -0.6 123,278 - RR41_RS00570 0.60 -2.2 123,278 - RR41_RS00570 0.60 +1.4 123,334 + RR41_RS00570 0.67 +0.4 123,334 + RR41_RS00570 0.67 -1.2 123,335 - RR41_RS00570 0.67 +0.6 123,335 - RR41_RS00570 0.67 +0.1 123,335 - RR41_RS00570 0.67 -0.7 123,380 + RR41_RS00570 0.73 +0.4 123,381 - RR41_RS00570 0.73 +0.4 123,381 - RR41_RS00570 0.73 +0.2 123,381 - RR41_RS00570 0.73 -0.2 123,387 + RR41_RS00570 0.73 -1.9 123,387 + RR41_RS00570 0.73 -0.0 123,387 + RR41_RS00570 0.73 -2.8 123,387 + RR41_RS00570 0.73 -1.8 123,508 - RR41_RS00570 0.88 +0.4 123,562 + -1.2 123,604 - -0.2 123,607 - -3.3 123,607 - -0.2 123,607 - +0.1 123,607 - -1.2 123,607 - +0.7 123,610 + -0.5 123,661 + -1.9 123,661 + -1.6 123,685 - -0.9 123,724 - +0.3 123,724 - -0.2 123,749 + -1.0 123,750 - -1.2
Or see this region's nucleotide sequence