Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06787

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06786 and MPMX19_06787 are separated by 183 nucleotidesMPMX19_06787 and MPMX19_06788 are separated by 108 nucleotides MPMX19_06786: MPMX19_06786 - Formate dehydrogenase, mitochondrial, at 50,589 to 51,629 _06786 MPMX19_06787: MPMX19_06787 - Fosfomycin resistance protein AbaF, at 51,813 to 53,213 _06787 MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305 _06788 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 50.952 kb on + strand, within MPMX19_06786at 50.953 kb on - strand, within MPMX19_06786at 50.953 kb on - strand, within MPMX19_06786at 51.384 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.436 kb on - strand, within MPMX19_06786at 51.436 kb on - strand, within MPMX19_06786at 51.441 kb on + strand, within MPMX19_06786at 51.442 kb on - strand, within MPMX19_06786at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 52.050 kb on + strand, within MPMX19_06787at 52.050 kb on + strand, within MPMX19_06787at 52.051 kb on - strand, within MPMX19_06787at 52.101 kb on + strand, within MPMX19_06787at 52.191 kb on + strand, within MPMX19_06787at 52.191 kb on + strand, within MPMX19_06787at 52.192 kb on - strand, within MPMX19_06787at 52.635 kb on + strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.640 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.663 kb on - strand, within MPMX19_06787at 52.663 kb on - strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 53.055 kb on + strand, within MPMX19_06787at 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.124 kb on + strandat 53.124 kb on + strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.340 kb on + strandat 53.340 kb on + strandat 53.341 kb on - strandat 53.341 kb on - strandat 54.066 kb on + strand, within MPMX19_06788at 54.067 kb on - strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.178 kb on - strand, within MPMX19_06788

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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50,952 + MPMX19_06786 0.35 -0.9
50,953 - MPMX19_06786 0.35 -0.5
50,953 - MPMX19_06786 0.35 +0.6
51,384 + MPMX19_06786 0.76 -2.6
51,435 + MPMX19_06786 0.81 -0.5
51,435 + MPMX19_06786 0.81 -2.1
51,435 + MPMX19_06786 0.81 -0.4
51,436 - MPMX19_06786 0.81 +0.4
51,436 - MPMX19_06786 0.81 +0.4
51,441 + MPMX19_06786 0.82 -1.7
51,442 - MPMX19_06786 0.82 -1.2
51,963 + MPMX19_06787 0.11 -0.1
51,963 + MPMX19_06787 0.11 -0.7
51,963 + MPMX19_06787 0.11 -2.2
51,963 + MPMX19_06787 0.11 +0.5
51,963 + MPMX19_06787 0.11 +0.0
51,963 + MPMX19_06787 0.11 +0.6
51,963 + MPMX19_06787 0.11 -0.0
51,963 + MPMX19_06787 0.11 -1.7
51,964 - MPMX19_06787 0.11 +0.0
51,964 - MPMX19_06787 0.11 -0.7
51,964 - MPMX19_06787 0.11 -1.0
51,964 - MPMX19_06787 0.11 -0.8
51,964 - MPMX19_06787 0.11 -1.1
51,964 - MPMX19_06787 0.11 -0.8
51,964 - MPMX19_06787 0.11 +0.5
51,964 - MPMX19_06787 0.11 +0.0
51,964 - MPMX19_06787 0.11 -0.2
52,050 + MPMX19_06787 0.17 -1.1
52,050 + MPMX19_06787 0.17 -1.1
52,051 - MPMX19_06787 0.17 -0.8
52,101 + MPMX19_06787 0.21 +0.2
52,191 + MPMX19_06787 0.27 -0.6
52,191 + MPMX19_06787 0.27 -0.4
52,192 - MPMX19_06787 0.27 +0.4
52,635 + MPMX19_06787 0.59 -0.1
52,636 - MPMX19_06787 0.59 +0.3
52,636 - MPMX19_06787 0.59 +0.3
52,636 - MPMX19_06787 0.59 -0.1
52,636 - MPMX19_06787 0.59 +1.2
52,636 - MPMX19_06787 0.59 +0.8
52,640 + MPMX19_06787 0.59 -0.4
52,641 + MPMX19_06787 0.59 -1.1
52,641 + MPMX19_06787 0.59 -0.8
52,641 + MPMX19_06787 0.59 +0.0
52,641 + MPMX19_06787 0.59 -1.0
52,642 - MPMX19_06787 0.59 +0.5
52,642 - MPMX19_06787 0.59 -0.5
52,642 - MPMX19_06787 0.59 +0.2
52,642 - MPMX19_06787 0.59 -0.8
52,662 + MPMX19_06787 0.61 -1.0
52,662 + MPMX19_06787 0.61 -0.7
52,662 + MPMX19_06787 0.61 -0.6
52,663 - MPMX19_06787 0.61 +0.1
52,663 - MPMX19_06787 0.61 -0.7
52,893 + MPMX19_06787 0.77 -1.4
52,893 + MPMX19_06787 0.77 -0.1
52,893 + MPMX19_06787 0.77 -0.8
52,893 + MPMX19_06787 0.77 +0.3
52,893 + MPMX19_06787 0.77 -0.6
52,893 + MPMX19_06787 0.77 -2.6
52,893 + MPMX19_06787 0.77 +1.6
52,893 + MPMX19_06787 0.77 +0.9
52,893 + MPMX19_06787 0.77 +0.3
52,894 - MPMX19_06787 0.77 +0.3
52,894 - MPMX19_06787 0.77 +0.0
52,894 - MPMX19_06787 0.77 -0.7
53,055 + MPMX19_06787 0.89 -1.0
53,085 + -0.4
53,085 + -1.6
53,085 + -0.1
53,085 + -1.3
53,085 + +0.2
53,085 + +0.0
53,085 + -0.0
53,085 + +0.2
53,085 + -0.6
53,085 + -0.4
53,086 - +0.3
53,086 - -0.5
53,086 - -0.2
53,086 - -2.1
53,086 - -0.2
53,086 - +1.0
53,086 - -1.1
53,086 - -0.6
53,086 - +0.3
53,124 + +0.8
53,124 + -0.7
53,125 - -0.5
53,125 - -0.6
53,125 - -0.3
53,125 - -0.6
53,125 - +0.0
53,125 - -1.4
53,125 - -0.1
53,340 + +0.2
53,340 + -1.4
53,341 - -1.0
53,341 - -1.0
54,066 + MPMX19_06788 0.76 -0.3
54,067 - MPMX19_06788 0.76 -0.5
54,177 + MPMX19_06788 0.87 -1.7
54,177 + MPMX19_06788 0.87 -0.4
54,177 + MPMX19_06788 0.87 +0.8
54,177 + MPMX19_06788 0.87 -0.8
54,177 + MPMX19_06788 0.87 -0.2
54,178 - MPMX19_06788 0.87 -2.2

Or see this region's nucleotide sequence