Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06753 and MPMX19_06754 are separated by 101 nucleotides MPMX19_06754 and MPMX19_06755 are separated by 88 nucleotides
MPMX19_06753: MPMX19_06753 - Guanidinopropionase, at 18,875 to 19,891
_06753
MPMX19_06754: MPMX19_06754 - hypothetical protein, at 19,993 to 20,913
_06754
MPMX19_06755: MPMX19_06755 - Hypotaurine/taurine--pyruvate aminotransferase, at 21,002 to 22,399
_06755
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.135 kb on - strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.371 kb on + strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.452 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.803 kb on + strand at 19.803 kb on + strand at 19.803 kb on + strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 20.157 kb on + strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.218 kb on - strand, within MPMX19_06754 at 20.367 kb on - strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.680 kb on + strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.759 kb on - strand, within MPMX19_06754 at 20.911 kb on + strand at 20.912 kb on - strand at 21.504 kb on + strand, within MPMX19_06755 at 21.504 kb on + strand, within MPMX19_06755 at 21.505 kb on - strand, within MPMX19_06755 at 21.505 kb on - strand, within MPMX19_06755 at 21.556 kb on - strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.663 kb on + strand, within MPMX19_06755 at 21.664 kb on - strand, within MPMX19_06755 at 21.786 kb on + strand, within MPMX19_06755 at 21.787 kb on - strand, within MPMX19_06755 at 21.817 kb on - strand, within MPMX19_06755
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 19,134 + MPMX19_06753 0.25 -0.5 19,134 + MPMX19_06753 0.25 -0.1 19,134 + MPMX19_06753 0.25 +0.4 19,135 - MPMX19_06753 0.26 -0.4 19,263 + MPMX19_06753 0.38 -3.0 19,263 + MPMX19_06753 0.38 +0.8 19,263 + MPMX19_06753 0.38 -0.8 19,263 + MPMX19_06753 0.38 +0.2 19,263 + MPMX19_06753 0.38 +1.3 19,263 + MPMX19_06753 0.38 -1.3 19,263 + MPMX19_06753 0.38 -0.6 19,263 + MPMX19_06753 0.38 -0.6 19,263 + MPMX19_06753 0.38 -0.2 19,263 + MPMX19_06753 0.38 -0.7 19,264 - MPMX19_06753 0.38 -1.0 19,264 - MPMX19_06753 0.38 +0.3 19,264 - MPMX19_06753 0.38 +0.1 19,264 - MPMX19_06753 0.38 -0.5 19,264 - MPMX19_06753 0.38 +0.5 19,264 - MPMX19_06753 0.38 -1.8 19,264 - MPMX19_06753 0.38 +0.0 19,264 - MPMX19_06753 0.38 -0.9 19,312 - MPMX19_06753 0.43 +0.2 19,312 - MPMX19_06753 0.43 -1.3 19,353 + MPMX19_06753 0.47 -1.0 19,353 + MPMX19_06753 0.47 +0.3 19,354 - MPMX19_06753 0.47 -0.8 19,354 - MPMX19_06753 0.47 -1.6 19,354 - MPMX19_06753 0.47 +0.2 19,354 - MPMX19_06753 0.47 +0.5 19,354 - MPMX19_06753 0.47 -2.0 19,371 + MPMX19_06753 0.49 -2.3 19,372 - MPMX19_06753 0.49 -1.0 19,372 - MPMX19_06753 0.49 -1.6 19,452 + MPMX19_06753 0.57 +0.8 19,515 + MPMX19_06753 0.63 -1.3 19,515 + MPMX19_06753 0.63 +0.8 19,803 + -0.9 19,803 + -1.2 19,803 + -0.4 19,932 - -1.8 19,932 - -2.4 19,932 - +0.5 19,949 - -1.0 19,949 - +0.2 19,989 + -0.4 19,989 + -0.8 19,989 + -0.3 19,989 + +0.2 19,990 - -2.1 19,990 - +0.6 19,990 - -0.9 19,990 - -0.6 19,990 - -0.7 20,157 + MPMX19_06754 0.18 -2.6 20,158 - MPMX19_06754 0.18 -0.6 20,158 - MPMX19_06754 0.18 -0.3 20,158 - MPMX19_06754 0.18 +1.9 20,158 - MPMX19_06754 0.18 -0.1 20,215 + MPMX19_06754 0.24 +0.6 20,215 + MPMX19_06754 0.24 +0.4 20,216 - MPMX19_06754 0.24 -1.6 20,216 - MPMX19_06754 0.24 +0.8 20,216 - MPMX19_06754 0.24 -0.4 20,216 - MPMX19_06754 0.24 -0.3 20,216 - MPMX19_06754 0.24 -0.4 20,218 - MPMX19_06754 0.24 +1.0 20,367 - MPMX19_06754 0.41 -1.6 20,608 + MPMX19_06754 0.67 -1.4 20,608 + MPMX19_06754 0.67 -0.5 20,609 - MPMX19_06754 0.67 -0.3 20,609 - MPMX19_06754 0.67 +1.6 20,609 - MPMX19_06754 0.67 +2.2 20,609 - MPMX19_06754 0.67 -0.4 20,641 + MPMX19_06754 0.70 -0.6 20,641 + MPMX19_06754 0.70 -0.6 20,641 + MPMX19_06754 0.70 +0.7 20,641 + MPMX19_06754 0.70 -1.3 20,641 + MPMX19_06754 0.70 -0.2 20,642 - MPMX19_06754 0.70 -0.3 20,642 - MPMX19_06754 0.70 -0.7 20,680 + MPMX19_06754 0.75 -0.1 20,681 - MPMX19_06754 0.75 +1.6 20,681 - MPMX19_06754 0.75 -0.1 20,758 + MPMX19_06754 0.83 -0.5 20,758 + MPMX19_06754 0.83 -1.0 20,758 + MPMX19_06754 0.83 +0.4 20,759 - MPMX19_06754 0.83 -1.1 20,911 + +0.3 20,912 - -0.8 21,504 + MPMX19_06755 0.36 +0.6 21,504 + MPMX19_06755 0.36 +0.6 21,505 - MPMX19_06755 0.36 -1.6 21,505 - MPMX19_06755 0.36 -0.7 21,556 - MPMX19_06755 0.40 +0.6 21,663 + MPMX19_06755 0.47 +0.2 21,663 + MPMX19_06755 0.47 -0.2 21,663 + MPMX19_06755 0.47 -2.4 21,664 - MPMX19_06755 0.47 -0.4 21,786 + MPMX19_06755 0.56 +0.3 21,787 - MPMX19_06755 0.56 -1.0 21,817 - MPMX19_06755 0.58 -0.1
Or see this region's nucleotide sequence