Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06221

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06220 and MPMX19_06221 are separated by 43 nucleotidesMPMX19_06221 and MPMX19_06222 are separated by 56 nucleotides MPMX19_06220: MPMX19_06220 - Alpha-ketoglutaric semialdehyde dehydrogenase 2, at 404,255 to 405,835 _06220 MPMX19_06221: MPMX19_06221 - L-2-keto-3-deoxyarabonate dehydratase, at 405,879 to 406,805 _06221 MPMX19_06222: MPMX19_06222 - 6-deoxy-6-sulfogluconolactonase, at 406,862 to 407,746 _06222 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1at 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.850 kb on + strandat 405.850 kb on + strandat 405.850 kb on + strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 406.078 kb on + strand, within MPMX19_06221at 406.078 kb on + strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.114 kb on + strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.811 kb on + strandat 407.189 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.651 kb on - strand, within MPMX19_06222at 407.661 kb on + strandat 407.661 kb on + strandat 407.661 kb on + strandat 407.662 kb on - strandat 407.662 kb on - strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.754 kb on - strandat 407.754 kb on - strandat 407.754 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
405,048 + MPMX19_06220 0.50 +0.0
405,048 + MPMX19_06220 0.50 +0.7
405,048 + MPMX19_06220 0.50 +1.2
405,048 + MPMX19_06220 0.50 -1.4
405,850 + +0.2
405,850 + +0.4
405,850 + +0.1
405,851 - -0.4
405,851 - +0.1
405,851 - +0.6
405,851 - -1.0
405,851 - -1.6
405,851 - +0.5
406,078 + MPMX19_06221 0.21 +0.4
406,078 + MPMX19_06221 0.21 +0.6
406,079 - MPMX19_06221 0.22 +0.1
406,079 - MPMX19_06221 0.22 +1.1
406,114 + MPMX19_06221 0.25 +0.6
406,115 - MPMX19_06221 0.25 -0.6
406,115 - MPMX19_06221 0.25 +0.1
406,303 + MPMX19_06221 0.46 +0.0
406,303 + MPMX19_06221 0.46 -0.7
406,303 + MPMX19_06221 0.46 -0.5
406,303 + MPMX19_06221 0.46 -0.4
406,304 - MPMX19_06221 0.46 +0.4
406,304 - MPMX19_06221 0.46 -0.0
406,304 - MPMX19_06221 0.46 +0.3
406,304 - MPMX19_06221 0.46 +1.6
406,471 + MPMX19_06221 0.64 -0.1
406,471 + MPMX19_06221 0.64 -0.6
406,472 - MPMX19_06221 0.64 +0.0
406,472 - MPMX19_06221 0.64 -0.6
406,811 + +0.2
407,189 + MPMX19_06222 0.37 +1.3
407,220 + MPMX19_06222 0.40 +0.3
407,220 + MPMX19_06222 0.40 -1.2
407,220 + MPMX19_06222 0.40 -1.5
407,220 + MPMX19_06222 0.40 -0.8
407,220 + MPMX19_06222 0.40 -0.5
407,220 + MPMX19_06222 0.40 -0.5
407,220 + MPMX19_06222 0.40 +0.8
407,220 + MPMX19_06222 0.40 +0.2
407,220 + MPMX19_06222 0.40 -2.2
407,221 - MPMX19_06222 0.41 -0.5
407,221 - MPMX19_06222 0.41 +0.0
407,221 - MPMX19_06222 0.41 -1.1
407,250 + MPMX19_06222 0.44 +1.3
407,250 + MPMX19_06222 0.44 -1.0
407,250 + MPMX19_06222 0.44 -1.4
407,250 + MPMX19_06222 0.44 +0.1
407,250 + MPMX19_06222 0.44 -0.7
407,250 + MPMX19_06222 0.44 +0.9
407,251 - MPMX19_06222 0.44 -0.3
407,251 - MPMX19_06222 0.44 -0.1
407,251 - MPMX19_06222 0.44 +0.8
407,251 - MPMX19_06222 0.44 -0.1
407,251 - MPMX19_06222 0.44 -0.5
407,251 - MPMX19_06222 0.44 -1.0
407,251 - MPMX19_06222 0.44 -0.1
407,251 - MPMX19_06222 0.44 -1.1
407,251 - MPMX19_06222 0.44 -0.1
407,251 - MPMX19_06222 0.44 +0.3
407,298 + MPMX19_06222 0.49 -0.6
407,298 + MPMX19_06222 0.49 -0.5
407,299 - MPMX19_06222 0.49 -2.0
407,299 - MPMX19_06222 0.49 -1.0
407,299 - MPMX19_06222 0.49 +0.6
407,299 - MPMX19_06222 0.49 -0.5
407,299 - MPMX19_06222 0.49 -0.5
407,299 - MPMX19_06222 0.49 -0.1
407,299 - MPMX19_06222 0.49 -0.4
407,299 - MPMX19_06222 0.49 -1.7
407,299 - MPMX19_06222 0.49 -0.7
407,299 - MPMX19_06222 0.49 -0.7
407,299 - MPMX19_06222 0.49 -0.2
407,299 - MPMX19_06222 0.49 -1.9
407,343 + MPMX19_06222 0.54 +0.0
407,343 + MPMX19_06222 0.54 -0.3
407,343 + MPMX19_06222 0.54 -1.7
407,344 - MPMX19_06222 0.54 -1.6
407,344 - MPMX19_06222 0.54 +0.2
407,651 - MPMX19_06222 0.89 +1.2
407,661 + -0.6
407,661 + +0.8
407,661 + +0.1
407,662 - -0.7
407,662 - +1.1
407,753 + +0.0
407,753 + -1.1
407,753 + -0.3
407,753 + -0.3
407,753 + -1.0
407,753 + +0.6
407,754 - -1.7
407,754 - +1.2
407,754 - -0.4

Or see this region's nucleotide sequence