Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06117 and MPMX19_06118 are separated by 147 nucleotides MPMX19_06118 and MPMX19_06119 are separated by 2 nucleotides MPMX19_06119 and MPMX19_06120 are separated by 81 nucleotides
MPMX19_06117: MPMX19_06117 - hypothetical protein, at 302,821 to 304,089
_06117
MPMX19_06118: MPMX19_06118 - Adenine phosphoribosyltransferase, at 304,237 to 304,752
_06118
MPMX19_06119: MPMX19_06119 - Inner membrane protein YphA, at 304,755 to 305,204
_06119
MPMX19_06120: MPMX19_06120 - hypothetical protein, at 305,286 to 306,242
_06120
Position (kb) 304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.350 kb on + strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.351 kb on - strand, within MPMX19_06117 at 303.767 kb on + strand, within MPMX19_06117 at 303.767 kb on + strand, within MPMX19_06117 at 303.767 kb on + strand, within MPMX19_06117 at 303.767 kb on + strand, within MPMX19_06117 at 303.768 kb on - strand, within MPMX19_06117 at 303.768 kb on - strand, within MPMX19_06117 at 304.033 kb on + strand at 304.034 kb on - strand at 304.171 kb on + strand at 304.171 kb on + strand at 304.171 kb on + strand at 304.172 kb on - strand at 304.172 kb on - strand at 304.172 kb on - strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.200 kb on + strand at 304.201 kb on - strand at 304.201 kb on - strand at 304.201 kb on - strand at 304.220 kb on + strand at 304.220 kb on + strand at 304.220 kb on + strand at 304.255 kb on - strand at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.297 kb on + strand, within MPMX19_06118 at 304.298 kb on - strand, within MPMX19_06118 at 304.298 kb on - strand, within MPMX19_06118 at 304.298 kb on - strand, within MPMX19_06118 at 304.298 kb on - strand, within MPMX19_06118 at 304.298 kb on - strand, within MPMX19_06118 at 304.510 kb on + strand, within MPMX19_06118 at 304.510 kb on + strand, within MPMX19_06118 at 304.510 kb on + strand, within MPMX19_06118 at 304.510 kb on + strand, within MPMX19_06118 at 304.511 kb on - strand, within MPMX19_06118 at 304.511 kb on - strand, within MPMX19_06118 at 304.522 kb on + strand, within MPMX19_06118 at 304.741 kb on + strand at 304.741 kb on + strand at 304.742 kb on - strand at 304.742 kb on - strand at 304.742 kb on - strand at 304.742 kb on - strand at 304.742 kb on - strand at 304.894 kb on + strand, within MPMX19_06119 at 304.894 kb on + strand, within MPMX19_06119 at 304.895 kb on - strand, within MPMX19_06119 at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.195 kb on - strand at 305.258 kb on + strand at 305.258 kb on + strand at 305.521 kb on + strand, within MPMX19_06120 at 305.521 kb on + strand, within MPMX19_06120 at 305.521 kb on + strand, within MPMX19_06120 at 305.522 kb on - strand, within MPMX19_06120 at 305.522 kb on - strand, within MPMX19_06120 at 305.608 kb on + strand, within MPMX19_06120 at 305.608 kb on + strand, within MPMX19_06120 at 305.609 kb on - strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.665 kb on + strand, within MPMX19_06120 at 305.666 kb on - strand, within MPMX19_06120 at 305.666 kb on - strand, within MPMX19_06120 at 305.666 kb on - strand, within MPMX19_06120 at 305.666 kb on - strand, within MPMX19_06120 at 305.674 kb on + strand, within MPMX19_06120 at 305.674 kb on + strand, within MPMX19_06120 at 305.674 kb on + strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120 at 305.675 kb on - strand, within MPMX19_06120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 303,350 + MPMX19_06117 0.42 +0.4 303,350 + MPMX19_06117 0.42 +0.0 303,350 + MPMX19_06117 0.42 -1.3 303,350 + MPMX19_06117 0.42 -0.6 303,350 + MPMX19_06117 0.42 -0.5 303,350 + MPMX19_06117 0.42 -0.6 303,350 + MPMX19_06117 0.42 +0.9 303,350 + MPMX19_06117 0.42 -1.6 303,350 + MPMX19_06117 0.42 -0.4 303,350 + MPMX19_06117 0.42 +0.1 303,350 + MPMX19_06117 0.42 -0.2 303,350 + MPMX19_06117 0.42 -0.2 303,350 + MPMX19_06117 0.42 -1.4 303,350 + MPMX19_06117 0.42 -0.2 303,350 + MPMX19_06117 0.42 -0.3 303,350 + MPMX19_06117 0.42 -1.1 303,350 + MPMX19_06117 0.42 -0.4 303,350 + MPMX19_06117 0.42 +0.0 303,350 + MPMX19_06117 0.42 -0.9 303,350 + MPMX19_06117 0.42 -0.4 303,351 - MPMX19_06117 0.42 +0.6 303,351 - MPMX19_06117 0.42 -0.2 303,351 - MPMX19_06117 0.42 -0.1 303,351 - MPMX19_06117 0.42 -0.3 303,351 - MPMX19_06117 0.42 -0.9 303,351 - MPMX19_06117 0.42 +1.3 303,351 - MPMX19_06117 0.42 -0.8 303,351 - MPMX19_06117 0.42 -1.0 303,351 - MPMX19_06117 0.42 -1.4 303,351 - MPMX19_06117 0.42 -0.4 303,351 - MPMX19_06117 0.42 -0.1 303,351 - MPMX19_06117 0.42 -0.2 303,351 - MPMX19_06117 0.42 -0.2 303,351 - MPMX19_06117 0.42 -0.3 303,351 - MPMX19_06117 0.42 -0.4 303,351 - MPMX19_06117 0.42 +0.4 303,351 - MPMX19_06117 0.42 -1.7 303,351 - MPMX19_06117 0.42 -1.0 303,351 - MPMX19_06117 0.42 +0.6 303,351 - MPMX19_06117 0.42 -0.9 303,351 - MPMX19_06117 0.42 -1.2 303,351 - MPMX19_06117 0.42 +0.0 303,767 + MPMX19_06117 0.75 -0.3 303,767 + MPMX19_06117 0.75 -1.3 303,767 + MPMX19_06117 0.75 +1.2 303,767 + MPMX19_06117 0.75 -0.7 303,768 - MPMX19_06117 0.75 +0.2 303,768 - MPMX19_06117 0.75 -0.2 304,033 + +0.3 304,034 - -0.6 304,171 + +0.3 304,171 + +1.3 304,171 + +0.1 304,172 - -0.3 304,172 - -0.7 304,172 - -1.7 304,200 + -1.0 304,200 + -0.5 304,200 + -0.9 304,200 + -0.1 304,200 + -0.6 304,200 + -0.9 304,200 + +0.6 304,200 + -1.3 304,200 + -0.4 304,200 + -0.6 304,200 + +0.3 304,200 + -0.2 304,201 - -1.2 304,201 - -0.9 304,201 - +0.2 304,220 + +0.0 304,220 + +0.5 304,220 + -1.2 304,255 - -1.7 304,297 + MPMX19_06118 0.12 -0.2 304,297 + MPMX19_06118 0.12 -0.6 304,297 + MPMX19_06118 0.12 -1.2 304,297 + MPMX19_06118 0.12 -1.0 304,297 + MPMX19_06118 0.12 -0.9 304,297 + MPMX19_06118 0.12 -0.8 304,297 + MPMX19_06118 0.12 -1.6 304,297 + MPMX19_06118 0.12 +0.9 304,297 + MPMX19_06118 0.12 -0.5 304,297 + MPMX19_06118 0.12 +0.2 304,298 - MPMX19_06118 0.12 +0.1 304,298 - MPMX19_06118 0.12 -1.6 304,298 - MPMX19_06118 0.12 -1.3 304,298 - MPMX19_06118 0.12 -0.4 304,298 - MPMX19_06118 0.12 +0.1 304,510 + MPMX19_06118 0.53 -0.9 304,510 + MPMX19_06118 0.53 -1.2 304,510 + MPMX19_06118 0.53 -0.4 304,510 + MPMX19_06118 0.53 -0.5 304,511 - MPMX19_06118 0.53 -0.5 304,511 - MPMX19_06118 0.53 -1.1 304,522 + MPMX19_06118 0.55 -0.7 304,741 + -0.8 304,741 + +1.6 304,742 - -1.5 304,742 - +0.1 304,742 - -1.4 304,742 - +0.5 304,742 - -0.5 304,894 + MPMX19_06119 0.31 -2.3 304,894 + MPMX19_06119 0.31 -1.0 304,895 - MPMX19_06119 0.31 +0.3 305,194 + +0.7 305,194 + +0.0 305,194 + +0.0 305,194 + +0.8 305,194 + -1.7 305,194 + -1.1 305,194 + +0.4 305,194 + +0.4 305,194 + -0.7 305,194 + +0.3 305,194 + -0.4 305,194 + +1.3 305,194 + -1.2 305,194 + +0.1 305,194 + +0.7 305,194 + +0.4 305,194 + -1.8 305,194 + +0.3 305,194 + +1.0 305,194 + +0.3 305,194 + -0.4 305,194 + -0.9 305,194 + +3.2 305,195 - -0.1 305,195 - +0.5 305,195 - -1.2 305,195 - -0.7 305,195 - +0.0 305,195 - +0.8 305,195 - -1.4 305,195 - -2.9 305,195 - -0.7 305,195 - +1.4 305,195 - -0.9 305,195 - -1.6 305,195 - +0.2 305,258 + +0.6 305,258 + -0.4 305,521 + MPMX19_06120 0.25 -0.6 305,521 + MPMX19_06120 0.25 +0.1 305,521 + MPMX19_06120 0.25 -0.6 305,522 - MPMX19_06120 0.25 -1.1 305,522 - MPMX19_06120 0.25 +0.7 305,608 + MPMX19_06120 0.34 -0.5 305,608 + MPMX19_06120 0.34 -0.7 305,609 - MPMX19_06120 0.34 +1.0 305,665 + MPMX19_06120 0.40 -0.4 305,665 + MPMX19_06120 0.40 -0.3 305,665 + MPMX19_06120 0.40 +0.3 305,665 + MPMX19_06120 0.40 -0.0 305,665 + MPMX19_06120 0.40 -1.7 305,665 + MPMX19_06120 0.40 +0.1 305,666 - MPMX19_06120 0.40 -0.4 305,666 - MPMX19_06120 0.40 -0.1 305,666 - MPMX19_06120 0.40 +0.5 305,666 - MPMX19_06120 0.40 -1.8 305,674 + MPMX19_06120 0.41 -0.4 305,674 + MPMX19_06120 0.41 -1.0 305,674 + MPMX19_06120 0.41 +0.1 305,675 - MPMX19_06120 0.41 -1.5 305,675 - MPMX19_06120 0.41 +0.3 305,675 - MPMX19_06120 0.41 -0.7 305,675 - MPMX19_06120 0.41 -0.7 305,675 - MPMX19_06120 0.41 +0.3 305,675 - MPMX19_06120 0.41 -0.6
Or see this region's nucleotide sequence