Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06062

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06061 and MPMX19_06062 are separated by 71 nucleotidesMPMX19_06062 and MPMX19_06063 overlap by 1 nucleotides MPMX19_06061: MPMX19_06061 - Solute-binding protein, at 227,423 to 228,448 _06061 MPMX19_06062: MPMX19_06062 - hypothetical protein, at 228,520 to 229,023 _06062 MPMX19_06063: MPMX19_06063 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 229,023 to 230,297 _06063 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.900 kb on + strand, within MPMX19_06061at 227.900 kb on + strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.147 kb on - strand, within MPMX19_06061at 228.147 kb on - strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.422 kb on + strandat 228.422 kb on + strandat 228.422 kb on + strandat 228.422 kb on + strandat 228.422 kb on + strandat 228.423 kb on - strandat 228.423 kb on - strandat 228.423 kb on - strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.487 kb on + strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.488 kb on - strandat 228.506 kb on + strandat 228.506 kb on + strandat 228.506 kb on + strandat 228.506 kb on + strandat 228.506 kb on + strandat 228.506 kb on + strandat 228.507 kb on - strandat 228.507 kb on - strandat 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.856 kb on + strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.857 kb on - strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.916 kb on + strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.917 kb on - strand, within MPMX19_06062at 228.923 kb on + strand, within MPMX19_06062at 228.923 kb on + strand, within MPMX19_06062at 229.110 kb on + strandat 229.110 kb on + strandat 229.110 kb on + strandat 229.110 kb on + strandat 229.111 kb on - strandat 229.111 kb on - strandat 229.111 kb on - strandat 229.111 kb on - strandat 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.158 kb on + strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.159 kb on - strand, within MPMX19_06063at 229.407 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.755 kb on + strand, within MPMX19_06063at 229.755 kb on + strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.782 kb on + strand, within MPMX19_06063at 229.782 kb on + strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.954 kb on - strand, within MPMX19_06063

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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227,795 + MPMX19_06061 0.36 +0.5
227,795 + MPMX19_06061 0.36 -0.6
227,795 + MPMX19_06061 0.36 -0.5
227,795 + MPMX19_06061 0.36 +1.0
227,900 + MPMX19_06061 0.46 -0.0
227,900 + MPMX19_06061 0.46 -1.0
227,901 - MPMX19_06061 0.47 -1.0
227,901 - MPMX19_06061 0.47 +1.0
227,901 - MPMX19_06061 0.47 -1.4
227,901 - MPMX19_06061 0.47 +0.9
228,131 + MPMX19_06061 0.69 -0.6
228,131 + MPMX19_06061 0.69 -1.2
228,131 + MPMX19_06061 0.69 -1.2
228,131 + MPMX19_06061 0.69 -0.3
228,131 + MPMX19_06061 0.69 +0.4
228,132 - MPMX19_06061 0.69 +1.1
228,132 - MPMX19_06061 0.69 -2.0
228,132 - MPMX19_06061 0.69 +0.2
228,146 + MPMX19_06061 0.70 -0.4
228,146 + MPMX19_06061 0.70 -0.8
228,146 + MPMX19_06061 0.70 -0.6
228,146 + MPMX19_06061 0.70 -1.4
228,146 + MPMX19_06061 0.70 -0.0
228,147 - MPMX19_06061 0.71 +1.1
228,147 - MPMX19_06061 0.71 +1.2
228,182 + MPMX19_06061 0.74 -0.7
228,182 + MPMX19_06061 0.74 -1.2
228,182 + MPMX19_06061 0.74 -1.6
228,182 + MPMX19_06061 0.74 +0.2
228,182 + MPMX19_06061 0.74 -0.2
228,182 + MPMX19_06061 0.74 +0.2
228,183 - MPMX19_06061 0.74 -0.4
228,183 - MPMX19_06061 0.74 +0.6
228,183 - MPMX19_06061 0.74 +0.3
228,183 - MPMX19_06061 0.74 -0.7
228,183 - MPMX19_06061 0.74 -1.4
228,183 - MPMX19_06061 0.74 -0.6
228,183 - MPMX19_06061 0.74 +0.3
228,183 - MPMX19_06061 0.74 -0.6
228,422 + -0.1
228,422 + -0.8
228,422 + +0.0
228,422 + -1.8
228,422 + +0.2
228,423 - -0.2
228,423 - +0.4
228,423 - -0.8
228,487 + -1.2
228,487 + -0.3
228,487 + +0.4
228,487 + -0.6
228,487 + -1.2
228,487 + -2.3
228,487 + +0.6
228,487 + +1.2
228,487 + -0.7
228,487 + +0.3
228,487 + -1.7
228,488 - -1.6
228,488 - -0.0
228,488 - -1.0
228,488 - +0.1
228,488 - -0.1
228,488 - -1.0
228,488 - -1.3
228,488 - -0.1
228,488 - -1.8
228,488 - +1.1
228,488 - -1.7
228,488 - +0.0
228,506 + +0.2
228,506 + -0.7
228,506 + +0.2
228,506 + -0.1
228,506 + -1.1
228,506 + -0.3
228,507 - -0.4
228,507 - -1.7
228,856 + MPMX19_06062 0.67 -0.7
228,856 + MPMX19_06062 0.67 +0.0
228,856 + MPMX19_06062 0.67 -0.8
228,856 + MPMX19_06062 0.67 -0.3
228,856 + MPMX19_06062 0.67 -0.5
228,856 + MPMX19_06062 0.67 +0.6
228,856 + MPMX19_06062 0.67 -0.6
228,856 + MPMX19_06062 0.67 -1.4
228,856 + MPMX19_06062 0.67 -0.3
228,857 - MPMX19_06062 0.67 -0.2
228,857 - MPMX19_06062 0.67 +0.2
228,857 - MPMX19_06062 0.67 +0.2
228,857 - MPMX19_06062 0.67 -0.6
228,857 - MPMX19_06062 0.67 +0.4
228,857 - MPMX19_06062 0.67 -1.5
228,857 - MPMX19_06062 0.67 +0.1
228,857 - MPMX19_06062 0.67 -0.0
228,857 - MPMX19_06062 0.67 +0.2
228,857 - MPMX19_06062 0.67 -0.8
228,857 - MPMX19_06062 0.67 -0.7
228,916 + MPMX19_06062 0.79 -1.2
228,916 + MPMX19_06062 0.79 +0.0
228,916 + MPMX19_06062 0.79 -0.4
228,916 + MPMX19_06062 0.79 +1.4
228,916 + MPMX19_06062 0.79 +0.2
228,916 + MPMX19_06062 0.79 +1.3
228,916 + MPMX19_06062 0.79 +0.3
228,916 + MPMX19_06062 0.79 +0.6
228,916 + MPMX19_06062 0.79 -0.1
228,916 + MPMX19_06062 0.79 +1.2
228,916 + MPMX19_06062 0.79 +0.0
228,916 + MPMX19_06062 0.79 -0.4
228,917 - MPMX19_06062 0.79 -0.4
228,917 - MPMX19_06062 0.79 -2.2
228,917 - MPMX19_06062 0.79 +0.0
228,917 - MPMX19_06062 0.79 +0.2
228,917 - MPMX19_06062 0.79 -0.2
228,917 - MPMX19_06062 0.79 -1.0
228,917 - MPMX19_06062 0.79 -0.8
228,917 - MPMX19_06062 0.79 -1.6
228,917 - MPMX19_06062 0.79 +0.1
228,917 - MPMX19_06062 0.79 -0.3
228,917 - MPMX19_06062 0.79 -1.8
228,917 - MPMX19_06062 0.79 -1.2
228,923 + MPMX19_06062 0.80 +0.6
228,923 + MPMX19_06062 0.80 +1.0
229,110 + +0.0
229,110 + -0.7
229,110 + -1.2
229,110 + +0.5
229,111 - -0.1
229,111 - +0.4
229,111 - -0.2
229,111 - -1.2
229,158 + MPMX19_06063 0.11 -0.7
229,158 + MPMX19_06063 0.11 +0.2
229,158 + MPMX19_06063 0.11 -0.4
229,158 + MPMX19_06063 0.11 +0.1
229,158 + MPMX19_06063 0.11 +0.0
229,158 + MPMX19_06063 0.11 -0.8
229,158 + MPMX19_06063 0.11 +0.6
229,158 + MPMX19_06063 0.11 -0.8
229,158 + MPMX19_06063 0.11 -0.2
229,158 + MPMX19_06063 0.11 +0.1
229,158 + MPMX19_06063 0.11 -0.2
229,158 + MPMX19_06063 0.11 -0.0
229,158 + MPMX19_06063 0.11 -0.6
229,158 + MPMX19_06063 0.11 +0.6
229,158 + MPMX19_06063 0.11 -0.9
229,158 + MPMX19_06063 0.11 -0.2
229,158 + MPMX19_06063 0.11 -1.3
229,158 + MPMX19_06063 0.11 +0.2
229,158 + MPMX19_06063 0.11 -0.9
229,158 + MPMX19_06063 0.11 -0.8
229,159 - MPMX19_06063 0.11 -0.7
229,159 - MPMX19_06063 0.11 -0.3
229,159 - MPMX19_06063 0.11 -0.8
229,159 - MPMX19_06063 0.11 +0.1
229,159 - MPMX19_06063 0.11 -0.9
229,159 - MPMX19_06063 0.11 +0.2
229,159 - MPMX19_06063 0.11 +0.7
229,159 - MPMX19_06063 0.11 +0.3
229,159 - MPMX19_06063 0.11 +1.0
229,159 - MPMX19_06063 0.11 -1.1
229,159 - MPMX19_06063 0.11 +0.5
229,159 - MPMX19_06063 0.11 -0.5
229,159 - MPMX19_06063 0.11 -0.6
229,159 - MPMX19_06063 0.11 -0.7
229,159 - MPMX19_06063 0.11 +0.5
229,159 - MPMX19_06063 0.11 -2.3
229,159 - MPMX19_06063 0.11 -0.0
229,159 - MPMX19_06063 0.11 -0.6
229,159 - MPMX19_06063 0.11 -0.7
229,159 - MPMX19_06063 0.11 -1.8
229,159 - MPMX19_06063 0.11 -0.2
229,159 - MPMX19_06063 0.11 -0.6
229,159 - MPMX19_06063 0.11 -1.2
229,159 - MPMX19_06063 0.11 +0.8
229,159 - MPMX19_06063 0.11 -0.3
229,159 - MPMX19_06063 0.11 -0.1
229,159 - MPMX19_06063 0.11 -1.0
229,159 - MPMX19_06063 0.11 -0.7
229,159 - MPMX19_06063 0.11 -0.3
229,159 - MPMX19_06063 0.11 -2.1
229,159 - MPMX19_06063 0.11 +0.0
229,407 + MPMX19_06063 0.30 -0.2
229,608 + MPMX19_06063 0.46 +0.2
229,608 + MPMX19_06063 0.46 +0.0
229,608 + MPMX19_06063 0.46 +0.9
229,608 + MPMX19_06063 0.46 -0.7
229,609 - MPMX19_06063 0.46 -0.4
229,609 - MPMX19_06063 0.46 +0.2
229,609 - MPMX19_06063 0.46 +0.5
229,609 - MPMX19_06063 0.46 -0.8
229,609 - MPMX19_06063 0.46 -0.2
229,755 + MPMX19_06063 0.57 -0.8
229,755 + MPMX19_06063 0.57 +1.1
229,756 - MPMX19_06063 0.57 -0.3
229,756 - MPMX19_06063 0.57 -0.7
229,756 - MPMX19_06063 0.57 -0.4
229,782 + MPMX19_06063 0.60 +0.6
229,782 + MPMX19_06063 0.60 -0.4
229,783 - MPMX19_06063 0.60 -0.4
229,783 - MPMX19_06063 0.60 -1.8
229,783 - MPMX19_06063 0.60 -1.3
229,783 - MPMX19_06063 0.60 -0.1
229,783 - MPMX19_06063 0.60 -0.3
229,783 - MPMX19_06063 0.60 -0.4
229,953 + MPMX19_06063 0.73 +0.0
229,953 + MPMX19_06063 0.73 +0.9
229,953 + MPMX19_06063 0.73 +0.0
229,953 + MPMX19_06063 0.73 -0.7
229,954 - MPMX19_06063 0.73 -0.3

Or see this region's nucleotide sequence