Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05799

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05798 and MPMX19_05799 overlap by 4 nucleotidesMPMX19_05799 and MPMX19_05800 are separated by 267 nucleotides MPMX19_05798: MPMX19_05798 - HTH-type transcriptional repressor NanR, at 520,938 to 521,789 _05798 MPMX19_05799: MPMX19_05799 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 521,786 to 522,841 _05799 MPMX19_05800: MPMX19_05800 - hypothetical protein, at 523,109 to 523,747 _05800 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 520.893 kb on + strandat 521.185 kb on - strand, within MPMX19_05798at 521.185 kb on - strand, within MPMX19_05798at 521.185 kb on - strand, within MPMX19_05798at 521.185 kb on - strand, within MPMX19_05798at 521.185 kb on - strand, within MPMX19_05798at 521.721 kb on + strandat 521.721 kb on + strandat 521.721 kb on + strandat 521.722 kb on - strandat 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.272 kb on + strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.273 kb on - strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.275 kb on + strand, within MPMX19_05799at 522.276 kb on - strand, within MPMX19_05799at 522.276 kb on - strand, within MPMX19_05799at 522.276 kb on - strand, within MPMX19_05799at 522.476 kb on + strand, within MPMX19_05799at 522.521 kb on + strand, within MPMX19_05799at 522.908 kb on - strandat 522.908 kb on - strandat 522.908 kb on - strandat 522.908 kb on - strandat 522.908 kb on - strandat 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.655 kb on + strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.656 kb on - strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.679 kb on + strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.680 kb on - strand, within MPMX19_05800at 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.700 kb on + strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.701 kb on - strandat 523.761 kb on - strandat 523.778 kb on + strandat 523.778 kb on + strandat 523.778 kb on + strandat 523.778 kb on + strandat 523.779 kb on - strandat 523.779 kb on - strandat 523.779 kb on - strandat 523.779 kb on - strandat 523.800 kb on + strandat 523.800 kb on + strandat 523.800 kb on + strandat 523.800 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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520,893 + -1.6
521,185 - MPMX19_05798 0.29 +0.7
521,185 - MPMX19_05798 0.29 -0.2
521,185 - MPMX19_05798 0.29 -0.2
521,185 - MPMX19_05798 0.29 -1.8
521,185 - MPMX19_05798 0.29 -2.1
521,721 + -0.7
521,721 + -1.3
521,721 + -0.6
521,722 - +0.1
522,272 + MPMX19_05799 0.46 -1.3
522,272 + MPMX19_05799 0.46 +0.3
522,272 + MPMX19_05799 0.46 -1.5
522,272 + MPMX19_05799 0.46 -0.1
522,272 + MPMX19_05799 0.46 -0.5
522,272 + MPMX19_05799 0.46 -0.4
522,272 + MPMX19_05799 0.46 -1.4
522,272 + MPMX19_05799 0.46 +0.2
522,272 + MPMX19_05799 0.46 -0.1
522,272 + MPMX19_05799 0.46 +0.1
522,273 - MPMX19_05799 0.46 -0.8
522,273 - MPMX19_05799 0.46 -1.5
522,273 - MPMX19_05799 0.46 -1.5
522,273 - MPMX19_05799 0.46 -0.5
522,273 - MPMX19_05799 0.46 +0.5
522,273 - MPMX19_05799 0.46 -0.9
522,273 - MPMX19_05799 0.46 -0.2
522,273 - MPMX19_05799 0.46 -0.4
522,273 - MPMX19_05799 0.46 +0.3
522,273 - MPMX19_05799 0.46 -0.3
522,273 - MPMX19_05799 0.46 -0.2
522,273 - MPMX19_05799 0.46 +0.3
522,273 - MPMX19_05799 0.46 -0.1
522,275 + MPMX19_05799 0.46 -0.0
522,275 + MPMX19_05799 0.46 -0.4
522,275 + MPMX19_05799 0.46 -0.4
522,275 + MPMX19_05799 0.46 -0.2
522,275 + MPMX19_05799 0.46 +0.5
522,275 + MPMX19_05799 0.46 -2.3
522,276 - MPMX19_05799 0.46 +0.1
522,276 - MPMX19_05799 0.46 -0.3
522,276 - MPMX19_05799 0.46 -0.8
522,476 + MPMX19_05799 0.65 -2.0
522,521 + MPMX19_05799 0.70 -0.1
522,908 - +0.2
522,908 - -0.7
522,908 - +0.0
522,908 - -1.1
522,908 - -1.2
523,655 + MPMX19_05800 0.85 +0.6
523,655 + MPMX19_05800 0.85 -0.3
523,655 + MPMX19_05800 0.85 +0.9
523,655 + MPMX19_05800 0.85 +0.2
523,655 + MPMX19_05800 0.85 -1.7
523,655 + MPMX19_05800 0.85 -0.5
523,655 + MPMX19_05800 0.85 -0.2
523,655 + MPMX19_05800 0.85 +0.1
523,655 + MPMX19_05800 0.85 -1.2
523,655 + MPMX19_05800 0.85 -1.7
523,656 - MPMX19_05800 0.86 -1.1
523,656 - MPMX19_05800 0.86 -0.5
523,656 - MPMX19_05800 0.86 -1.1
523,656 - MPMX19_05800 0.86 -0.5
523,656 - MPMX19_05800 0.86 +0.0
523,656 - MPMX19_05800 0.86 -0.1
523,656 - MPMX19_05800 0.86 +0.2
523,656 - MPMX19_05800 0.86 +0.5
523,656 - MPMX19_05800 0.86 -1.5
523,656 - MPMX19_05800 0.86 -0.5
523,679 + MPMX19_05800 0.89 -0.0
523,679 + MPMX19_05800 0.89 +0.8
523,679 + MPMX19_05800 0.89 -0.8
523,679 + MPMX19_05800 0.89 -0.8
523,679 + MPMX19_05800 0.89 -2.3
523,679 + MPMX19_05800 0.89 +0.7
523,679 + MPMX19_05800 0.89 -0.8
523,679 + MPMX19_05800 0.89 -0.5
523,679 + MPMX19_05800 0.89 -1.2
523,679 + MPMX19_05800 0.89 +0.2
523,679 + MPMX19_05800 0.89 -0.5
523,679 + MPMX19_05800 0.89 -0.1
523,679 + MPMX19_05800 0.89 -0.1
523,679 + MPMX19_05800 0.89 +0.4
523,679 + MPMX19_05800 0.89 -1.1
523,679 + MPMX19_05800 0.89 -1.1
523,679 + MPMX19_05800 0.89 +0.4
523,680 - MPMX19_05800 0.89 -1.0
523,680 - MPMX19_05800 0.89 +1.8
523,680 - MPMX19_05800 0.89 +1.0
523,680 - MPMX19_05800 0.89 +0.6
523,680 - MPMX19_05800 0.89 -0.8
523,680 - MPMX19_05800 0.89 -0.9
523,680 - MPMX19_05800 0.89 +0.4
523,680 - MPMX19_05800 0.89 +0.0
523,680 - MPMX19_05800 0.89 +0.8
523,680 - MPMX19_05800 0.89 -0.8
523,680 - MPMX19_05800 0.89 +0.3
523,680 - MPMX19_05800 0.89 +0.0
523,680 - MPMX19_05800 0.89 -0.3
523,700 + +0.1
523,700 + -0.8
523,700 + +0.0
523,700 + -2.1
523,700 + -0.4
523,700 + -0.7
523,700 + -1.0
523,700 + +0.5
523,700 + +0.5
523,701 - -0.1
523,701 - +0.5
523,701 - +0.5
523,701 - -1.5
523,701 - -0.1
523,701 - -0.1
523,701 - +0.9
523,761 - +0.5
523,778 + +0.3
523,778 + -1.3
523,778 + -1.0
523,778 + -0.1
523,779 - -0.1
523,779 - -2.5
523,779 - +1.9
523,779 - -1.3
523,800 + -0.1
523,800 + -0.5
523,800 + +0.5
523,800 + +0.4

Or see this region's nucleotide sequence