Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05716 and MPMX19_05717 are separated by 12 nucleotides MPMX19_05717 and MPMX19_05718 are separated by 110 nucleotides MPMX19_05718 and MPMX19_05719 are separated by 198 nucleotides
MPMX19_05716: MPMX19_05716 - hypothetical protein, at 434,976 to 436,034
_05716
MPMX19_05717: MPMX19_05717 - hypothetical protein, at 436,047 to 436,874
_05717
MPMX19_05718: MPMX19_05718 - hypothetical protein, at 436,985 to 437,650
_05718
MPMX19_05719: MPMX19_05719 - hypothetical protein, at 437,849 to 438,448
_05719
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.006 kb on + strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.007 kb on - strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.009 kb on + strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.010 kb on - strand at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.341 kb on + strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.342 kb on - strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.531 kb on + strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.532 kb on - strand, within MPMX19_05717 at 436.980 kb on + strand at 436.980 kb on + strand at 436.981 kb on - strand at 436.981 kb on - strand at 436.994 kb on - strand at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.052 kb on + strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.053 kb on - strand, within MPMX19_05718 at 437.076 kb on + strand, within MPMX19_05718 at 437.076 kb on + strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.077 kb on - strand, within MPMX19_05718 at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.703 kb on + strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.704 kb on - strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.705 kb on + strand at 437.706 kb on - strand at 437.706 kb on - strand at 437.706 kb on - strand at 437.706 kb on - strand at 438.012 kb on + strand, within MPMX19_05719 at 438.012 kb on + strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 436,006 + -1.2 436,006 + +0.0 436,006 + -0.1 436,006 + -1.2 436,006 + +0.5 436,006 + +0.4 436,006 + -0.9 436,006 + +0.2 436,006 + -0.1 436,007 - -0.5 436,007 - -1.5 436,007 - +0.2 436,007 - +0.8 436,007 - +0.6 436,007 - +0.3 436,007 - +1.2 436,007 - -1.7 436,007 - +0.5 436,007 - +0.4 436,007 - -0.8 436,007 - +0.3 436,007 - -2.2 436,007 - -0.6 436,007 - -1.2 436,007 - -0.7 436,007 - +0.3 436,007 - -0.2 436,007 - -0.7 436,007 - +0.3 436,007 - -2.0 436,009 + -0.0 436,009 + -0.8 436,009 + -0.1 436,009 + -1.3 436,010 - -0.8 436,010 - -0.1 436,010 - -0.5 436,010 - +2.0 436,010 - -1.5 436,010 - -0.2 436,010 - -2.0 436,341 + MPMX19_05717 0.36 -1.5 436,341 + MPMX19_05717 0.36 -0.5 436,341 + MPMX19_05717 0.36 -0.5 436,341 + MPMX19_05717 0.36 -1.1 436,341 + MPMX19_05717 0.36 -0.4 436,341 + MPMX19_05717 0.36 -0.1 436,341 + MPMX19_05717 0.36 +0.5 436,341 + MPMX19_05717 0.36 -0.2 436,342 - MPMX19_05717 0.36 -1.2 436,342 - MPMX19_05717 0.36 +0.2 436,342 - MPMX19_05717 0.36 -0.5 436,342 - MPMX19_05717 0.36 -0.8 436,342 - MPMX19_05717 0.36 -1.4 436,342 - MPMX19_05717 0.36 +0.2 436,531 + MPMX19_05717 0.58 -0.3 436,531 + MPMX19_05717 0.58 +0.1 436,531 + MPMX19_05717 0.58 +1.2 436,531 + MPMX19_05717 0.58 +0.0 436,531 + MPMX19_05717 0.58 -0.9 436,532 - MPMX19_05717 0.59 -0.7 436,532 - MPMX19_05717 0.59 -0.1 436,532 - MPMX19_05717 0.59 -0.1 436,532 - MPMX19_05717 0.59 -0.5 436,532 - MPMX19_05717 0.59 -0.5 436,532 - MPMX19_05717 0.59 -0.3 436,980 + +0.5 436,980 + -0.0 436,981 - -1.4 436,981 - +1.5 436,994 - +0.4 437,052 + MPMX19_05718 0.10 -0.7 437,052 + MPMX19_05718 0.10 -2.4 437,052 + MPMX19_05718 0.10 +0.7 437,052 + MPMX19_05718 0.10 +0.6 437,052 + MPMX19_05718 0.10 +0.5 437,052 + MPMX19_05718 0.10 +0.2 437,052 + MPMX19_05718 0.10 -1.0 437,052 + MPMX19_05718 0.10 -0.3 437,052 + MPMX19_05718 0.10 +0.3 437,052 + MPMX19_05718 0.10 -2.1 437,052 + MPMX19_05718 0.10 +0.7 437,052 + MPMX19_05718 0.10 -0.3 437,052 + MPMX19_05718 0.10 -1.1 437,052 + MPMX19_05718 0.10 +0.1 437,052 + MPMX19_05718 0.10 -1.1 437,052 + MPMX19_05718 0.10 +0.9 437,053 - MPMX19_05718 0.10 -0.4 437,053 - MPMX19_05718 0.10 +0.7 437,053 - MPMX19_05718 0.10 -0.6 437,053 - MPMX19_05718 0.10 +0.9 437,053 - MPMX19_05718 0.10 +0.8 437,053 - MPMX19_05718 0.10 -0.4 437,053 - MPMX19_05718 0.10 +1.0 437,053 - MPMX19_05718 0.10 -0.3 437,053 - MPMX19_05718 0.10 +0.7 437,053 - MPMX19_05718 0.10 +0.4 437,053 - MPMX19_05718 0.10 -1.5 437,053 - MPMX19_05718 0.10 -0.5 437,053 - MPMX19_05718 0.10 -0.2 437,053 - MPMX19_05718 0.10 -2.5 437,053 - MPMX19_05718 0.10 -0.6 437,053 - MPMX19_05718 0.10 +1.1 437,076 + MPMX19_05718 0.14 +1.0 437,076 + MPMX19_05718 0.14 -0.1 437,077 - MPMX19_05718 0.14 +0.1 437,077 - MPMX19_05718 0.14 +0.4 437,077 - MPMX19_05718 0.14 -0.2 437,077 - MPMX19_05718 0.14 -0.5 437,077 - MPMX19_05718 0.14 -0.5 437,077 - MPMX19_05718 0.14 +0.2 437,703 + -0.5 437,703 + -0.5 437,703 + -2.1 437,703 + -0.1 437,703 + -0.9 437,703 + -0.7 437,704 - -0.3 437,704 - +0.7 437,704 - +0.5 437,704 - -0.4 437,704 - -1.5 437,704 - -0.9 437,704 - +0.3 437,704 - -0.5 437,704 - -0.4 437,705 + +0.1 437,705 + -1.3 437,705 + -1.5 437,705 + -1.0 437,705 + -0.5 437,705 + +0.1 437,705 + -1.5 437,705 + +0.3 437,705 + -0.8 437,706 - -2.0 437,706 - -0.4 437,706 - -1.2 437,706 - -0.4 438,012 + MPMX19_05719 0.27 +0.5 438,012 + MPMX19_05719 0.27 -0.7 438,013 - MPMX19_05719 0.27 -1.3 438,013 - MPMX19_05719 0.27 -1.7 438,013 - MPMX19_05719 0.27 -0.7 438,556 + -1.5 438,556 + -1.2 438,556 + -0.5 438,556 + -1.3 438,556 + -1.2 438,557 - +0.3 438,557 - +1.5 438,557 - -1.6 438,557 - -0.1 438,557 - -1.1 438,557 - -1.2 438,557 - -1.4 438,595 + +0.1 438,595 + -0.5 438,595 + +0.5 438,595 + -1.8 438,595 + -0.5 438,595 + -0.6 438,595 + -0.3 438,595 + -0.8 438,595 + -0.3 438,595 + -0.5 438,595 + -1.3 438,595 + +0.1 438,595 + +0.4 438,596 - -0.1 438,596 - +0.5 438,596 - -1.3 438,596 - -0.5 438,596 - -1.3 438,596 - -1.0 438,596 - -0.1 438,596 - -0.8 438,596 - -1.5 438,596 - -1.2 438,596 - -0.7 438,596 - +0.5 438,596 - -1.0 438,596 - -0.2 438,596 - -1.2 438,612 + +0.5 438,612 + -0.5 438,612 + -1.5 438,612 + -0.7 438,612 + -0.4 438,613 - -2.1 438,613 - +0.5 438,613 - -0.4 438,613 - -0.5 438,613 - +1.5 438,616 + +0.4 438,616 + -0.4 438,616 + -1.1 438,616 + -1.5 438,616 + -0.8 438,616 + -1.3 438,617 - +0.2 438,617 - -1.9 438,617 - +0.9 438,617 - -0.4 438,617 - +0.0 438,617 - -1.6
Or see this region's nucleotide sequence