Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05597 and MPMX19_05598 are separated by 370 nucleotides MPMX19_05598 and MPMX19_05599 are separated by 81 nucleotides MPMX19_05599 and MPMX19_05600 are separated by 16 nucleotides MPMX19_05600 and MPMX19_05601 overlap by 4 nucleotides
MPMX19_05597: MPMX19_05597 - hypothetical protein, at 308,125 to 308,610
_05597
MPMX19_05598: MPMX19_05598 - hypothetical protein, at 308,981 to 309,343
_05598
MPMX19_05599: MPMX19_05599 - hypothetical protein, at 309,425 to 310,189
_05599
MPMX19_05600: MPMX19_05600 - hypothetical protein, at 310,206 to 311,006
_05600
MPMX19_05601: MPMX19_05601 - putative ABC transporter ATP-binding protein YejF, at 311,003 to 312,703
_05601
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.643 kb on - strand at 308.643 kb on - strand at 308.643 kb on - strand at 308.692 kb on + strand at 308.692 kb on + strand at 308.692 kb on + strand at 308.692 kb on + strand at 308.692 kb on + strand at 308.693 kb on - strand at 308.693 kb on - strand at 308.728 kb on + strand at 308.728 kb on + strand at 308.728 kb on + strand at 308.729 kb on - strand at 308.845 kb on + strand at 308.875 kb on + strand at 308.875 kb on + strand at 308.875 kb on + strand at 308.875 kb on + strand at 308.875 kb on + strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.876 kb on - strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.911 kb on + strand at 308.912 kb on - strand at 308.999 kb on + strand at 308.999 kb on + strand at 308.999 kb on + strand at 308.999 kb on + strand at 308.999 kb on + strand at 308.999 kb on + strand at 309.000 kb on - strand at 309.000 kb on - strand at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.173 kb on + strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.174 kb on - strand, within MPMX19_05598 at 309.341 kb on + strand at 309.341 kb on + strand at 309.341 kb on + strand at 309.341 kb on + strand at 309.341 kb on + strand at 309.341 kb on + strand at 309.342 kb on - strand at 309.342 kb on - strand at 309.342 kb on - strand at 309.372 kb on + strand at 309.373 kb on - strand at 309.373 kb on - strand at 309.373 kb on - strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.394 kb on + strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 309.395 kb on - strand at 310.110 kb on + strand, within MPMX19_05599 at 310.110 kb on + strand, within MPMX19_05599 at 310.111 kb on - strand, within MPMX19_05599 at 310.111 kb on - strand, within MPMX19_05599 at 310.175 kb on + strand at 310.175 kb on + strand at 310.175 kb on + strand at 310.175 kb on + strand at 310.175 kb on + strand at 310.176 kb on - strand at 310.176 kb on - strand at 310.176 kb on - strand at 310.176 kb on - strand at 310.176 kb on - strand at 310.215 kb on + strand at 310.216 kb on - strand at 310.216 kb on - strand at 310.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 308,643 - -0.6 308,643 - -1.2 308,643 - -1.0 308,692 + -1.8 308,692 + -0.2 308,692 + -0.1 308,692 + -0.1 308,692 + +0.1 308,693 - +0.7 308,693 - -0.2 308,728 + -0.9 308,728 + +0.4 308,728 + +0.2 308,729 - -0.2 308,845 + -1.3 308,875 + -1.4 308,875 + -0.2 308,875 + -0.5 308,875 + +2.1 308,875 + -0.1 308,876 - -2.2 308,876 - -0.8 308,876 - -1.2 308,876 - +0.2 308,876 - -0.3 308,876 - +1.3 308,876 - -1.3 308,911 + +0.8 308,911 + -0.2 308,911 + -0.3 308,911 + +0.8 308,911 + -0.5 308,911 + +1.3 308,911 + -0.9 308,912 - -0.1 308,999 + +0.7 308,999 + -1.5 308,999 + -1.5 308,999 + +0.4 308,999 + -1.4 308,999 + +0.3 309,000 - +0.9 309,000 - +0.3 309,173 + MPMX19_05598 0.53 +0.3 309,173 + MPMX19_05598 0.53 -1.1 309,173 + MPMX19_05598 0.53 -1.6 309,173 + MPMX19_05598 0.53 +0.4 309,173 + MPMX19_05598 0.53 +0.3 309,173 + MPMX19_05598 0.53 -0.4 309,173 + MPMX19_05598 0.53 +0.3 309,173 + MPMX19_05598 0.53 -0.3 309,173 + MPMX19_05598 0.53 -0.7 309,173 + MPMX19_05598 0.53 +0.1 309,173 + MPMX19_05598 0.53 +0.1 309,173 + MPMX19_05598 0.53 -1.8 309,173 + MPMX19_05598 0.53 +0.3 309,173 + MPMX19_05598 0.53 +1.1 309,173 + MPMX19_05598 0.53 -1.1 309,174 - MPMX19_05598 0.53 -1.0 309,174 - MPMX19_05598 0.53 -1.1 309,174 - MPMX19_05598 0.53 -1.2 309,174 - MPMX19_05598 0.53 -0.8 309,174 - MPMX19_05598 0.53 -0.7 309,174 - MPMX19_05598 0.53 -0.5 309,174 - MPMX19_05598 0.53 -0.5 309,174 - MPMX19_05598 0.53 -0.9 309,174 - MPMX19_05598 0.53 +0.5 309,174 - MPMX19_05598 0.53 +0.7 309,174 - MPMX19_05598 0.53 +0.2 309,174 - MPMX19_05598 0.53 -1.3 309,174 - MPMX19_05598 0.53 -0.8 309,341 + -0.1 309,341 + -0.3 309,341 + +0.1 309,341 + -0.5 309,341 + -0.7 309,341 + +0.1 309,342 - -0.8 309,342 - +0.5 309,342 - -1.1 309,372 + -0.5 309,373 - -0.8 309,373 - -1.9 309,373 - +0.2 309,394 + -1.1 309,394 + -0.4 309,394 + -0.1 309,394 + -1.0 309,394 + +0.1 309,394 + -1.2 309,394 + +0.1 309,394 + +1.2 309,394 + -2.3 309,394 + +0.3 309,394 + +0.2 309,394 + -0.7 309,394 + -0.1 309,394 + +0.1 309,394 + +0.3 309,394 + -1.0 309,394 + -0.5 309,394 + -0.2 309,394 + -1.6 309,394 + -2.5 309,394 + +0.5 309,394 + -1.5 309,394 + -0.6 309,394 + -0.1 309,394 + -0.9 309,394 + +0.5 309,394 + -1.9 309,394 + -0.1 309,394 + -0.2 309,394 + +0.5 309,394 + +0.2 309,394 + +0.1 309,394 + -0.8 309,394 + +0.3 309,394 + -0.3 309,394 + -0.5 309,394 + -0.7 309,394 + -1.9 309,394 + -0.5 309,395 - -0.9 309,395 - -0.7 309,395 - +0.3 309,395 - -1.5 309,395 - -0.4 309,395 - -0.5 309,395 - -1.1 309,395 - -0.3 309,395 - -1.5 309,395 - -0.5 309,395 - +0.0 309,395 - -0.1 309,395 - -0.2 309,395 - -0.6 309,395 - -0.6 309,395 - -0.5 309,395 - -0.5 309,395 - -0.5 309,395 - +1.2 309,395 - -0.2 309,395 - -0.8 309,395 - -0.6 309,395 - -0.2 309,395 - -0.8 309,395 - -1.7 309,395 - +1.0 309,395 - -0.5 309,395 - -0.5 309,395 - +0.3 309,395 - -2.1 309,395 - -0.5 309,395 - -0.2 309,395 - -0.1 309,395 - -0.1 309,395 - -2.4 309,395 - -2.1 309,395 - -0.8 309,395 - +0.3 309,395 - -0.5 310,110 + MPMX19_05599 0.90 +0.0 310,110 + MPMX19_05599 0.90 +0.0 310,111 - MPMX19_05599 0.90 +0.2 310,111 - MPMX19_05599 0.90 +0.5 310,175 + -0.2 310,175 + -2.1 310,175 + -0.1 310,175 + -0.8 310,175 + +0.4 310,176 - -1.9 310,176 - -1.3 310,176 - -2.7 310,176 - +0.1 310,176 - -0.1 310,215 + -0.4 310,216 - +0.8 310,216 - +1.3 310,216 - -1.1
Or see this region's nucleotide sequence