Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05590 and MPMX19_05591 are separated by 31 nucleotides MPMX19_05591 and MPMX19_05592 are separated by 153 nucleotides MPMX19_05592 and MPMX19_05593 are separated by 69 nucleotides MPMX19_05593 and MPMX19_05594 are separated by 20 nucleotides
MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374
_05590
MPMX19_05591: MPMX19_05591 - hypothetical protein, at 302,406 to 302,834
_05591
MPMX19_05592: MPMX19_05592 - Glycine cleavage system transcriptional activator, at 302,988 to 303,872
_05592
MPMX19_05593: MPMX19_05593 - Pyrrolidone-carboxylate peptidase, at 303,942 to 304,589
_05593
MPMX19_05594: MPMX19_05594 - hypothetical protein, at 304,610 to 306,085
_05594
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.021 kb on + strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.022 kb on - strand, within MPMX19_05590 at 302.135 kb on + strand, within MPMX19_05590 at 302.136 kb on - strand, within MPMX19_05590 at 302.366 kb on + strand at 302.367 kb on - strand at 302.372 kb on + strand at 302.372 kb on + strand at 302.373 kb on - strand at 302.373 kb on - strand at 302.407 kb on + strand at 302.408 kb on - strand at 302.408 kb on - strand at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.521 kb on + strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.522 kb on - strand, within MPMX19_05591 at 302.767 kb on + strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.768 kb on - strand, within MPMX19_05591 at 302.917 kb on + strand at 302.918 kb on - strand at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.198 kb on + strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.199 kb on - strand, within MPMX19_05592 at 303.427 kb on - strand, within MPMX19_05592 at 303.427 kb on - strand, within MPMX19_05592 at 303.597 kb on + strand, within MPMX19_05592 at 303.597 kb on + strand, within MPMX19_05592 at 303.598 kb on - strand, within MPMX19_05592 at 303.598 kb on - strand, within MPMX19_05592 at 303.598 kb on - strand, within MPMX19_05592 at 303.789 kb on + strand at 303.789 kb on + strand at 303.789 kb on + strand at 303.790 kb on - strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.871 kb on - strand at 303.943 kb on + strand at 303.943 kb on + strand at 303.943 kb on + strand at 304.147 kb on + strand, within MPMX19_05593 at 304.147 kb on + strand, within MPMX19_05593 at 304.148 kb on - strand, within MPMX19_05593 at 304.148 kb on - strand, within MPMX19_05593 at 304.255 kb on + strand, within MPMX19_05593 at 304.255 kb on + strand, within MPMX19_05593 at 304.255 kb on + strand, within MPMX19_05593 at 304.255 kb on + strand, within MPMX19_05593 at 304.256 kb on - strand, within MPMX19_05593 at 304.256 kb on - strand, within MPMX19_05593 at 304.256 kb on - strand, within MPMX19_05593 at 304.256 kb on - strand, within MPMX19_05593 at 304.256 kb on - strand, within MPMX19_05593
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 302,021 + MPMX19_05590 0.62 -0.0 302,021 + MPMX19_05590 0.62 -0.3 302,021 + MPMX19_05590 0.62 -0.2 302,021 + MPMX19_05590 0.62 -1.4 302,021 + MPMX19_05590 0.62 -0.4 302,022 - MPMX19_05590 0.62 +1.0 302,022 - MPMX19_05590 0.62 +0.1 302,022 - MPMX19_05590 0.62 +0.3 302,022 - MPMX19_05590 0.62 -0.4 302,022 - MPMX19_05590 0.62 +1.2 302,022 - MPMX19_05590 0.62 -1.2 302,135 + MPMX19_05590 0.74 -1.8 302,136 - MPMX19_05590 0.74 +0.9 302,366 + +0.2 302,367 - +1.1 302,372 + +1.9 302,372 + +0.2 302,373 - -1.9 302,373 - -1.5 302,407 + -1.9 302,408 - -0.1 302,408 - +0.0 302,521 + MPMX19_05591 0.27 -0.7 302,521 + MPMX19_05591 0.27 +0.6 302,521 + MPMX19_05591 0.27 -0.5 302,521 + MPMX19_05591 0.27 -1.3 302,521 + MPMX19_05591 0.27 -0.5 302,521 + MPMX19_05591 0.27 +0.8 302,521 + MPMX19_05591 0.27 +0.1 302,521 + MPMX19_05591 0.27 -0.2 302,522 - MPMX19_05591 0.27 -3.1 302,522 - MPMX19_05591 0.27 -0.3 302,522 - MPMX19_05591 0.27 +0.1 302,522 - MPMX19_05591 0.27 -1.9 302,522 - MPMX19_05591 0.27 -0.1 302,522 - MPMX19_05591 0.27 -1.2 302,767 + MPMX19_05591 0.84 -1.0 302,768 - MPMX19_05591 0.84 -1.2 302,768 - MPMX19_05591 0.84 -0.1 302,768 - MPMX19_05591 0.84 +0.2 302,768 - MPMX19_05591 0.84 -1.3 302,768 - MPMX19_05591 0.84 -0.1 302,768 - MPMX19_05591 0.84 +0.7 302,768 - MPMX19_05591 0.84 -1.5 302,768 - MPMX19_05591 0.84 -1.5 302,768 - MPMX19_05591 0.84 -1.5 302,917 + -1.2 302,918 - -1.5 303,198 + MPMX19_05592 0.24 -2.0 303,198 + MPMX19_05592 0.24 -1.5 303,198 + MPMX19_05592 0.24 -0.8 303,198 + MPMX19_05592 0.24 +0.7 303,198 + MPMX19_05592 0.24 -1.1 303,198 + MPMX19_05592 0.24 +0.0 303,198 + MPMX19_05592 0.24 -0.3 303,198 + MPMX19_05592 0.24 -1.2 303,198 + MPMX19_05592 0.24 -0.3 303,198 + MPMX19_05592 0.24 -2.5 303,198 + MPMX19_05592 0.24 -0.4 303,198 + MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -1.7 303,199 - MPMX19_05592 0.24 -0.3 303,199 - MPMX19_05592 0.24 -0.4 303,199 - MPMX19_05592 0.24 -1.3 303,199 - MPMX19_05592 0.24 -0.4 303,199 - MPMX19_05592 0.24 -0.6 303,199 - MPMX19_05592 0.24 -0.7 303,199 - MPMX19_05592 0.24 -0.8 303,199 - MPMX19_05592 0.24 +0.6 303,199 - MPMX19_05592 0.24 -0.2 303,199 - MPMX19_05592 0.24 -0.4 303,199 - MPMX19_05592 0.24 +0.1 303,199 - MPMX19_05592 0.24 -0.6 303,199 - MPMX19_05592 0.24 -1.2 303,199 - MPMX19_05592 0.24 -0.7 303,199 - MPMX19_05592 0.24 -0.1 303,427 - MPMX19_05592 0.50 -0.5 303,427 - MPMX19_05592 0.50 +0.3 303,597 + MPMX19_05592 0.69 -0.2 303,597 + MPMX19_05592 0.69 +0.1 303,598 - MPMX19_05592 0.69 -0.7 303,598 - MPMX19_05592 0.69 -1.3 303,598 - MPMX19_05592 0.69 -0.4 303,789 + -0.5 303,789 + -0.5 303,789 + -0.1 303,790 - +0.8 303,870 + -0.9 303,870 + -1.6 303,870 + -0.1 303,870 + +0.7 303,870 + -0.1 303,870 + -1.2 303,870 + -0.6 303,870 + -0.3 303,870 + -0.7 303,870 + -0.9 303,870 + -0.7 303,870 + -1.1 303,870 + -1.5 303,871 - -0.7 303,871 - -0.7 303,871 - +0.2 303,871 - -1.8 303,871 - -1.0 303,871 - +0.4 303,871 - -0.8 303,871 - +0.8 303,871 - -0.6 303,871 - +0.9 303,871 - -0.5 303,871 - +0.4 303,871 - -0.1 303,871 - +0.0 303,871 - -0.4 303,871 - -1.3 303,871 - -0.6 303,871 - -0.3 303,871 - -1.1 303,943 + -1.1 303,943 + +0.3 303,943 + +0.1 304,147 + MPMX19_05593 0.32 -1.7 304,147 + MPMX19_05593 0.32 -0.4 304,148 - MPMX19_05593 0.32 +0.1 304,148 - MPMX19_05593 0.32 +0.3 304,255 + MPMX19_05593 0.48 +0.0 304,255 + MPMX19_05593 0.48 +1.2 304,255 + MPMX19_05593 0.48 -1.3 304,255 + MPMX19_05593 0.48 +0.8 304,256 - MPMX19_05593 0.48 +0.3 304,256 - MPMX19_05593 0.48 -0.5 304,256 - MPMX19_05593 0.48 -0.8 304,256 - MPMX19_05593 0.48 -0.4 304,256 - MPMX19_05593 0.48 +0.1
Or see this region's nucleotide sequence