Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05551 and MPMX19_05552 are separated by 10 nucleotides MPMX19_05552 and MPMX19_05553 are separated by 40 nucleotides MPMX19_05553 and MPMX19_05554 overlap by 4 nucleotides
MPMX19_05551: MPMX19_05551 - Chemotaxis protein CheY, at 259,342 to 259,737
_05551
MPMX19_05552: MPMX19_05552 - hypothetical protein, at 259,748 to 260,380
_05552
MPMX19_05553: MPMX19_05553 - hypothetical protein, at 260,421 to 262,397
_05553
MPMX19_05554: MPMX19_05554 - hypothetical protein, at 262,394 to 264,079
_05554
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.359 kb on + strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.414 kb on - strand at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.917 kb on + strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 260.918 kb on - strand, within MPMX19_05553 at 261.758 kb on + strand, within MPMX19_05553 at 261.759 kb on - strand, within MPMX19_05553
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 259,508 - MPMX19_05551 0.42 -0.8 259,508 - MPMX19_05551 0.42 -1.8 259,508 - MPMX19_05551 0.42 -0.0 259,508 - MPMX19_05551 0.42 +0.9 260,357 + +0.4 260,357 + -0.0 260,357 + +0.1 260,357 + -1.5 260,358 - -0.9 260,358 - -0.7 260,358 - -1.1 260,358 - -0.1 260,358 - -1.1 260,358 - -0.1 260,358 - +0.7 260,358 - -0.0 260,358 - -0.8 260,358 - -0.1 260,358 - -0.2 260,359 + -0.6 260,360 - -1.1 260,360 - +0.1 260,360 - +0.1 260,414 - -0.9 260,917 + MPMX19_05553 0.25 -1.8 260,917 + MPMX19_05553 0.25 +0.5 260,917 + MPMX19_05553 0.25 -0.8 260,917 + MPMX19_05553 0.25 -0.1 260,917 + MPMX19_05553 0.25 -0.9 260,917 + MPMX19_05553 0.25 -0.5 260,917 + MPMX19_05553 0.25 -1.3 260,918 - MPMX19_05553 0.25 -0.1 260,918 - MPMX19_05553 0.25 +0.4 260,918 - MPMX19_05553 0.25 -1.7 261,758 + MPMX19_05553 0.68 -0.4 261,759 - MPMX19_05553 0.68 -1.1
Or see this region's nucleotide sequence