Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05499 and MPMX19_05500 are separated by 5 nucleotides MPMX19_05500 and MPMX19_05501 are separated by 745 nucleotides
MPMX19_05499: MPMX19_05499 - hypothetical protein, at 202,562 to 204,052
_05499
MPMX19_05500: MPMX19_05500 - High-affinity branched-chain amino acid transport system permease protein LivH, at 204,058 to 204,963
_05500
MPMX19_05501: MPMX19_05501 - Alanine dehydrogenase, at 205,709 to 206,833
_05501
Position (kb) 204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.956 kb on + strand at 204.956 kb on + strand at 204.999 kb on + strand at 204.999 kb on + strand at 205.000 kb on - strand at 205.035 kb on + strand at 205.035 kb on + strand at 205.035 kb on + strand at 205.035 kb on + strand at 205.035 kb on + strand at 205.036 kb on - strand at 205.036 kb on - strand at 205.036 kb on - strand at 205.036 kb on - strand at 205.036 kb on - strand at 205.227 kb on + strand at 205.227 kb on + strand at 205.472 kb on - strand at 205.472 kb on - strand at 205.512 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.527 kb on + strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.528 kb on - strand at 205.557 kb on + strand at 205.688 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.773 kb on + strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.774 kb on - strand at 205.941 kb on + strand, within MPMX19_05501 at 205.941 kb on + strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501 at 205.942 kb on - strand, within MPMX19_05501
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 204,956 + +0.0 204,956 + -1.1 204,999 + -0.1 204,999 + -0.3 205,000 - +1.4 205,035 + -0.4 205,035 + -1.1 205,035 + +0.2 205,035 + -0.1 205,035 + -0.7 205,036 - -0.5 205,036 - -0.9 205,036 - +0.5 205,036 - -0.5 205,036 - -1.4 205,227 + +0.5 205,227 + -0.4 205,472 - +0.2 205,472 - -1.0 205,512 + -2.2 205,527 + +1.1 205,527 + -0.4 205,527 + +0.2 205,527 + -0.6 205,527 + -0.3 205,527 + -0.3 205,527 + -0.5 205,528 - +0.0 205,528 - -1.1 205,528 - +1.8 205,528 - -1.0 205,528 - -0.5 205,528 - -0.3 205,528 - +0.3 205,528 - -0.1 205,528 - +0.5 205,557 + +0.2 205,688 + -0.9 205,773 + -0.6 205,773 + -1.7 205,773 + -0.4 205,773 + -1.8 205,773 + -0.8 205,773 + -1.8 205,773 + -0.4 205,773 + -0.7 205,773 + -0.8 205,773 + -2.5 205,774 - -0.2 205,774 - -0.4 205,774 - +0.1 205,774 - -0.9 205,774 - -0.3 205,774 - +0.4 205,774 - -0.5 205,774 - +0.4 205,941 + MPMX19_05501 0.21 +0.1 205,941 + MPMX19_05501 0.21 -0.1 205,942 - MPMX19_05501 0.21 -1.4 205,942 - MPMX19_05501 0.21 -0.4 205,942 - MPMX19_05501 0.21 -0.2 205,942 - MPMX19_05501 0.21 +0.5 205,942 - MPMX19_05501 0.21 +0.8 205,942 - MPMX19_05501 0.21 -0.1 205,942 - MPMX19_05501 0.21 +0.2 205,942 - MPMX19_05501 0.21 -0.7
Or see this region's nucleotide sequence