Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05469 and MPMX19_05470 are separated by 260 nucleotides MPMX19_05470 and MPMX19_05471 are separated by 21 nucleotides MPMX19_05471 and MPMX19_05472 are separated by 88 nucleotides
MPMX19_05469: MPMX19_05469 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 167,151 to 167,939
_05469
MPMX19_05470: MPMX19_05470 - hypothetical protein, at 168,200 to 170,269
_05470
MPMX19_05471: MPMX19_05471 - Thioredoxin 2, at 170,291 to 170,791
_05471
MPMX19_05472: MPMX19_05472 - hypothetical protein, at 170,880 to 171,134
_05472
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.210 kb on + strand at 167.210 kb on + strand at 167.211 kb on - strand at 167.649 kb on + strand, within MPMX19_05469 at 167.649 kb on + strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.773 kb on - strand, within MPMX19_05469 at 167.773 kb on - strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.890 kb on - strand at 167.890 kb on - strand at 167.908 kb on + strand at 168.105 kb on + strand at 168.106 kb on - strand at 168.106 kb on - strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.111 kb on - strand at 168.111 kb on - strand at 168.111 kb on - strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.386 kb on + strand at 168.968 kb on + strand, within MPMX19_05470 at 168.968 kb on + strand, within MPMX19_05470 at 168.968 kb on + strand, within MPMX19_05470 at 168.968 kb on + strand, within MPMX19_05470 at 168.968 kb on + strand, within MPMX19_05470 at 168.968 kb on + strand, within MPMX19_05470 at 168.969 kb on - strand, within MPMX19_05470 at 168.969 kb on - strand, within MPMX19_05470 at 168.969 kb on - strand, within MPMX19_05470 at 168.969 kb on - strand, within MPMX19_05470 at 168.969 kb on - strand, within MPMX19_05470 at 170.267 kb on + strand at 170.293 kb on - strand at 170.566 kb on + strand, within MPMX19_05471 at 170.567 kb on - strand, within MPMX19_05471 at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.881 kb on + strand at 170.882 kb on - strand at 170.882 kb on - strand at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.996 kb on - strand, within MPMX19_05472 at 171.052 kb on + strand, within MPMX19_05472 at 171.195 kb on + strand at 171.196 kb on - strand at 171.223 kb on - strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 167,210 + -0.8 167,210 + -1.1 167,211 - -0.8 167,649 + MPMX19_05469 0.63 +0.5 167,649 + MPMX19_05469 0.63 +0.3 167,650 - MPMX19_05469 0.63 -0.9 167,650 - MPMX19_05469 0.63 +1.2 167,650 - MPMX19_05469 0.63 -0.3 167,650 - MPMX19_05469 0.63 -0.5 167,650 - MPMX19_05469 0.63 -1.6 167,650 - MPMX19_05469 0.63 +1.3 167,772 + MPMX19_05469 0.79 -0.1 167,772 + MPMX19_05469 0.79 +0.2 167,772 + MPMX19_05469 0.79 +0.4 167,773 - MPMX19_05469 0.79 -0.1 167,773 - MPMX19_05469 0.79 -0.7 167,856 + MPMX19_05469 0.89 +0.1 167,856 + MPMX19_05469 0.89 -2.1 167,856 + MPMX19_05469 0.89 -2.4 167,856 + MPMX19_05469 0.89 -1.3 167,857 - MPMX19_05469 0.89 +0.8 167,857 - MPMX19_05469 0.89 -1.1 167,857 - MPMX19_05469 0.89 -1.5 167,857 - MPMX19_05469 0.89 +0.5 167,857 - MPMX19_05469 0.89 +0.1 167,857 - MPMX19_05469 0.89 +0.5 167,857 - MPMX19_05469 0.89 -0.8 167,890 - +0.2 167,890 - -2.1 167,908 + -0.0 168,105 + -0.4 168,106 - -0.5 168,106 - -1.8 168,110 + -0.5 168,110 + +0.1 168,110 + +1.1 168,110 + -1.3 168,110 + -1.3 168,111 - -0.7 168,111 - -1.9 168,111 - -1.1 168,293 + +1.0 168,293 + -0.6 168,293 + -2.4 168,293 + -1.9 168,294 - +0.9 168,294 - -0.2 168,294 - -1.0 168,294 - -0.1 168,294 - +0.8 168,294 - -1.6 168,386 + +0.2 168,968 + MPMX19_05470 0.37 +0.5 168,968 + MPMX19_05470 0.37 -1.0 168,968 + MPMX19_05470 0.37 +0.1 168,968 + MPMX19_05470 0.37 -1.7 168,968 + MPMX19_05470 0.37 +0.3 168,968 + MPMX19_05470 0.37 -1.3 168,969 - MPMX19_05470 0.37 +0.7 168,969 - MPMX19_05470 0.37 +0.4 168,969 - MPMX19_05470 0.37 +0.4 168,969 - MPMX19_05470 0.37 +0.5 168,969 - MPMX19_05470 0.37 -0.2 170,267 + +1.0 170,293 - -1.1 170,566 + MPMX19_05471 0.55 +0.7 170,567 - MPMX19_05471 0.55 +0.4 170,832 + -0.1 170,832 + -2.2 170,832 + +0.7 170,832 + +0.7 170,832 + -0.2 170,832 + -0.6 170,832 + -1.4 170,832 + -1.4 170,832 + -1.5 170,832 + +0.5 170,832 + -0.5 170,832 + +1.1 170,833 - -1.1 170,833 - -1.2 170,833 - -0.1 170,833 - -1.9 170,833 - -0.6 170,833 - -0.3 170,833 - -0.5 170,833 - +0.2 170,833 - -1.7 170,881 + -1.4 170,882 - -0.5 170,882 - -1.4 170,926 + MPMX19_05472 0.18 +0.7 170,926 + MPMX19_05472 0.18 -2.6 170,926 + MPMX19_05472 0.18 -2.1 170,926 + MPMX19_05472 0.18 +0.2 170,926 + MPMX19_05472 0.18 +1.9 170,926 + MPMX19_05472 0.18 -1.3 170,927 - MPMX19_05472 0.18 -0.1 170,927 - MPMX19_05472 0.18 -0.8 170,927 - MPMX19_05472 0.18 -0.3 170,927 - MPMX19_05472 0.18 -1.4 170,927 - MPMX19_05472 0.18 -1.3 170,927 - MPMX19_05472 0.18 -0.7 170,927 - MPMX19_05472 0.18 +0.9 170,995 + MPMX19_05472 0.45 -0.9 170,995 + MPMX19_05472 0.45 +0.5 170,996 - MPMX19_05472 0.45 -0.3 171,052 + MPMX19_05472 0.67 -0.1 171,195 + -0.3 171,196 - -0.2 171,223 - +1.5 171,238 + -1.4 171,238 + -0.9 171,238 + -1.7 171,238 + +0.6 171,239 - -1.3 171,239 - -2.7 171,239 - +0.2
Or see this region's nucleotide sequence