Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05091 and MPMX19_05092 are separated by 27 nucleotides MPMX19_05092 and MPMX19_05093 overlap by 1 nucleotides MPMX19_05093 and MPMX19_05094 are separated by 205 nucleotides MPMX19_05094 and MPMX19_05095 overlap by 20 nucleotides MPMX19_05095 and MPMX19_05096 are separated by 55 nucleotides
MPMX19_05091: MPMX19_05091 - Biotin transporter BioY, at 581,040 to 581,588
_05091
MPMX19_05092: MPMX19_05092 - Energy-coupling factor transporter transmembrane protein EcfT, at 581,616 to 582,266
_05092
MPMX19_05093: MPMX19_05093 - Biotin transport ATP-binding protein BioM, at 582,266 to 582,940
_05093
MPMX19_05094: MPMX19_05094 - Antitoxin YefM, at 583,146 to 583,412
_05094
MPMX19_05095: MPMX19_05095 - Toxin YoeB, at 583,393 to 583,659
_05095
MPMX19_05096: MPMX19_05096 - L-cystine import ATP-binding protein TcyC, at 583,715 to 584,542
_05096
Position (kb) 582
583 Strain fitness (log2 ratio) -2
-1
0
1 at 581.675 kb on - strand at 581.675 kb on - strand at 582.254 kb on - strand at 582.254 kb on - strand at 582.254 kb on - strand at 583.023 kb on + strand at 583.053 kb on + strand at 583.053 kb on + strand at 583.053 kb on + strand at 583.054 kb on - strand at 583.070 kb on - strand at 583.070 kb on - strand at 583.073 kb on + strand at 583.073 kb on + strand at 583.074 kb on - strand at 583.098 kb on + strand at 583.099 kb on - strand at 583.099 kb on - strand at 583.173 kb on - strand, within MPMX19_05094 at 583.173 kb on - strand, within MPMX19_05094 at 583.173 kb on - strand, within MPMX19_05094 at 583.429 kb on + strand, within MPMX19_05095 at 583.430 kb on - strand, within MPMX19_05095 at 583.430 kb on - strand, within MPMX19_05095 at 583.433 kb on + strand, within MPMX19_05095 at 583.433 kb on + strand, within MPMX19_05095 at 583.434 kb on - strand, within MPMX19_05095 at 583.434 kb on - strand, within MPMX19_05095 at 583.500 kb on + strand, within MPMX19_05095 at 583.501 kb on - strand, within MPMX19_05095 at 583.501 kb on - strand, within MPMX19_05095 at 583.594 kb on + strand, within MPMX19_05095 at 583.595 kb on - strand, within MPMX19_05095 at 583.634 kb on + strand at 583.634 kb on + strand at 583.634 kb on + strand at 583.648 kb on + strand at 583.654 kb on + strand at 583.655 kb on - strand at 583.655 kb on - strand at 583.655 kb on - strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 581,675 - -0.8 581,675 - -0.3 582,254 - -0.5 582,254 - -1.0 582,254 - -1.4 583,023 + -1.0 583,053 + -0.0 583,053 + -0.0 583,053 + +0.2 583,054 - -0.7 583,070 - -0.0 583,070 - -0.4 583,073 + -1.0 583,073 + +0.1 583,074 - +0.3 583,098 + -1.0 583,099 - -0.8 583,099 - -0.8 583,173 - MPMX19_05094 0.10 -0.8 583,173 - MPMX19_05094 0.10 -0.8 583,173 - MPMX19_05094 0.10 -0.1 583,429 + MPMX19_05095 0.13 -1.0 583,430 - MPMX19_05095 0.14 -2.3 583,430 - MPMX19_05095 0.14 -0.7 583,433 + MPMX19_05095 0.15 -0.9 583,433 + MPMX19_05095 0.15 -1.0 583,434 - MPMX19_05095 0.15 -0.1 583,434 - MPMX19_05095 0.15 -0.8 583,500 + MPMX19_05095 0.40 +0.2 583,501 - MPMX19_05095 0.40 +0.2 583,501 - MPMX19_05095 0.40 -0.1 583,594 + MPMX19_05095 0.75 -2.7 583,595 - MPMX19_05095 0.76 -2.1 583,634 + -2.1 583,634 + -1.3 583,634 + +1.1 583,648 + -2.1 583,654 + -0.2 583,655 - -1.0 583,655 - -0.5 583,655 - -0.0 583,737 + +0.6 583,737 + -0.8 583,737 + -2.0 583,737 + -2.1 583,737 + -0.5 583,737 + -1.7 583,737 + -0.2 583,738 - -1.1 583,738 - +0.2 583,738 - -0.5 583,738 - +0.8 583,738 - -0.0 583,738 - -1.6 583,738 - +1.3 583,738 - -2.3
Or see this region's nucleotide sequence