Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05066 and MPMX19_05067 are separated by 173 nucleotides MPMX19_05067 and MPMX19_05068 are separated by 95 nucleotides MPMX19_05068 and MPMX19_05069 are separated by 52 nucleotides
MPMX19_05066: MPMX19_05066 - 1-deoxy-D-xylulose-5-phosphate synthase, at 548,357 to 550,270
_05066
MPMX19_05067: MPMX19_05067 - hypothetical protein, at 550,444 to 551,487
_05067
MPMX19_05068: MPMX19_05068 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 551,583 to 552,326
_05068
MPMX19_05069: MPMX19_05069 - hypothetical protein, at 552,379 to 553,608
_05069
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.284 kb on + strand at 550.285 kb on - strand at 550.285 kb on - strand at 550.285 kb on - strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.302 kb on + strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.303 kb on - strand at 550.316 kb on + strand at 550.317 kb on - strand at 550.317 kb on - strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.365 kb on - strand at 550.386 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.452 kb on + strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.453 kb on - strand at 550.620 kb on + strand, within MPMX19_05067 at 551.103 kb on + strand, within MPMX19_05067 at 551.103 kb on + strand, within MPMX19_05067 at 551.104 kb on - strand, within MPMX19_05067 at 551.104 kb on - strand, within MPMX19_05067 at 551.594 kb on - strand at 551.677 kb on - strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 552.287 kb on + strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 550,284 + +1.0 550,285 - -0.3 550,285 - -0.6 550,285 - -0.2 550,302 + -0.1 550,302 + +1.0 550,302 + -0.2 550,302 + -0.3 550,302 + +0.3 550,303 - -0.4 550,303 - -1.7 550,303 - -0.5 550,303 - -1.2 550,316 + +0.6 550,317 - +0.4 550,317 - -0.2 550,364 + -1.7 550,364 + +0.1 550,364 + +1.1 550,364 + -1.6 550,364 + -1.6 550,364 + -0.5 550,364 + -2.2 550,364 + +1.1 550,364 + -1.1 550,365 - -2.6 550,365 - -0.3 550,365 - -0.8 550,365 - -1.6 550,365 - +0.2 550,365 - +1.1 550,365 - +0.0 550,365 - +1.1 550,365 - -0.6 550,365 - -0.4 550,365 - -0.8 550,365 - -1.6 550,365 - -0.7 550,386 + -1.0 550,452 + -0.2 550,452 + -0.2 550,452 + +0.3 550,452 + +0.6 550,452 + -0.1 550,452 + -1.8 550,452 + +0.0 550,452 + -0.8 550,452 + -0.8 550,453 - +1.1 550,453 - -1.4 550,453 - +0.1 550,453 - +0.8 550,453 - +0.0 550,453 - -0.2 550,453 - -0.2 550,620 + MPMX19_05067 0.17 -0.6 551,103 + MPMX19_05067 0.63 -0.6 551,103 + MPMX19_05067 0.63 -0.2 551,104 - MPMX19_05067 0.63 +0.4 551,104 - MPMX19_05067 0.63 -2.5 551,594 - +0.2 551,677 - MPMX19_05068 0.13 +1.6 551,901 + MPMX19_05068 0.43 +0.8 551,901 + MPMX19_05068 0.43 +0.0 551,901 + MPMX19_05068 0.43 +0.4 551,901 + MPMX19_05068 0.43 +0.2 551,901 + MPMX19_05068 0.43 +0.3 551,901 + MPMX19_05068 0.43 -0.2 551,902 - MPMX19_05068 0.43 +0.7 551,902 - MPMX19_05068 0.43 +1.0 551,902 - MPMX19_05068 0.43 +2.0 551,902 - MPMX19_05068 0.43 +0.6 551,902 - MPMX19_05068 0.43 -0.4 551,902 - MPMX19_05068 0.43 +0.3 551,902 - MPMX19_05068 0.43 -0.3 551,902 - MPMX19_05068 0.43 -0.2 551,902 - MPMX19_05068 0.43 -0.7 551,902 - MPMX19_05068 0.43 +0.4 552,287 + +1.6 552,288 - +1.9 552,288 - +0.5 552,288 - +1.2 552,461 + -1.9 552,461 + +1.0 552,461 + -1.8 552,461 + -0.6 552,461 + -0.4 552,462 - +0.3 552,462 - -0.6 552,462 - -1.6 552,462 - -0.0 552,462 - +0.1
Or see this region's nucleotide sequence