Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04973 and MPMX19_04974 are separated by 11 nucleotides MPMX19_04974 and MPMX19_04975 overlap by 11 nucleotides MPMX19_04975 and MPMX19_04976 are separated by 15 nucleotides
MPMX19_04973: MPMX19_04973 - hypothetical protein, at 443,761 to 444,159
_04973
MPMX19_04974: MPMX19_04974 - Nitrobenzene nitroreductase, at 444,171 to 444,872
_04974
MPMX19_04975: MPMX19_04975 - hypothetical protein, at 444,862 to 445,359
_04975
MPMX19_04976: MPMX19_04976 - hypothetical protein, at 445,375 to 446,325
_04976
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.046 kb on - strand, within MPMX19_04973 at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.544 kb on + strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.613 kb on + strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 445.094 kb on + strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.277 kb on + strand, within MPMX19_04975 at 445.277 kb on + strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.337 kb on + strand at 445.337 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.396 kb on + strand at 445.397 kb on - strand at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976 at 445.877 kb on + strand, within MPMX19_04976 at 445.877 kb on + strand, within MPMX19_04976 at 445.877 kb on + strand, within MPMX19_04976 at 445.877 kb on + strand, within MPMX19_04976 at 445.877 kb on + strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.878 kb on - strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.976 kb on + strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 445.977 kb on - strand, within MPMX19_04976 at 446.168 kb on + strand, within MPMX19_04976 at 446.169 kb on - strand, within MPMX19_04976
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 444,043 + MPMX19_04973 0.71 -0.4 444,043 + MPMX19_04973 0.71 +0.2 444,043 + MPMX19_04973 0.71 +0.1 444,043 + MPMX19_04973 0.71 -0.9 444,044 - MPMX19_04973 0.71 -0.9 444,044 - MPMX19_04973 0.71 +0.6 444,044 - MPMX19_04973 0.71 -1.2 444,044 - MPMX19_04973 0.71 +0.1 444,044 - MPMX19_04973 0.71 -1.7 444,044 - MPMX19_04973 0.71 -0.1 444,044 - MPMX19_04973 0.71 +0.0 444,044 - MPMX19_04973 0.71 -0.4 444,044 - MPMX19_04973 0.71 +0.6 444,044 - MPMX19_04973 0.71 -1.0 444,044 - MPMX19_04973 0.71 -1.0 444,046 - MPMX19_04973 0.71 -0.8 444,157 + -0.6 444,157 + -2.0 444,157 + -0.7 444,157 + -1.4 444,157 + -0.8 444,157 + -0.1 444,157 + +0.0 444,157 + +0.6 444,157 + +1.6 444,157 + -0.7 444,158 - +0.1 444,158 - -1.2 444,158 - +1.3 444,329 - MPMX19_04974 0.23 -1.1 444,329 - MPMX19_04974 0.23 -0.7 444,329 - MPMX19_04974 0.23 -1.2 444,544 + MPMX19_04974 0.53 -0.2 444,545 - MPMX19_04974 0.53 +0.6 444,545 - MPMX19_04974 0.53 -0.6 444,580 + MPMX19_04974 0.58 -0.4 444,580 + MPMX19_04974 0.58 +0.8 444,581 - MPMX19_04974 0.58 +0.6 444,581 - MPMX19_04974 0.58 +0.9 444,581 - MPMX19_04974 0.58 +1.0 444,605 - MPMX19_04974 0.62 -0.7 444,605 - MPMX19_04974 0.62 -0.4 444,605 - MPMX19_04974 0.62 +0.0 444,607 + MPMX19_04974 0.62 -0.2 444,607 + MPMX19_04974 0.62 -0.6 444,608 - MPMX19_04974 0.62 -0.4 444,608 - MPMX19_04974 0.62 -0.4 444,608 - MPMX19_04974 0.62 -0.5 444,608 - MPMX19_04974 0.62 -0.7 444,608 - MPMX19_04974 0.62 -0.8 444,608 - MPMX19_04974 0.62 -0.8 444,608 - MPMX19_04974 0.62 -0.1 444,608 - MPMX19_04974 0.62 +0.6 444,613 + MPMX19_04974 0.63 +0.0 444,614 - MPMX19_04974 0.63 +0.2 444,614 - MPMX19_04974 0.63 +1.3 444,789 + MPMX19_04974 0.88 -1.1 444,789 + MPMX19_04974 0.88 +0.3 444,789 + MPMX19_04974 0.88 +0.6 444,789 + MPMX19_04974 0.88 -1.4 444,789 + MPMX19_04974 0.88 -1.2 444,790 - MPMX19_04974 0.88 -0.5 444,790 - MPMX19_04974 0.88 +0.8 444,790 - MPMX19_04974 0.88 -2.1 445,094 + MPMX19_04975 0.47 +0.0 445,095 - MPMX19_04975 0.47 +0.2 445,095 - MPMX19_04975 0.47 -0.4 445,136 + MPMX19_04975 0.55 +1.1 445,136 + MPMX19_04975 0.55 +1.0 445,136 + MPMX19_04975 0.55 +0.6 445,137 - MPMX19_04975 0.55 -1.3 445,137 - MPMX19_04975 0.55 -0.7 445,277 + MPMX19_04975 0.83 +0.3 445,277 + MPMX19_04975 0.83 -0.6 445,278 - MPMX19_04975 0.84 -0.2 445,278 - MPMX19_04975 0.84 +0.8 445,278 - MPMX19_04975 0.84 +0.4 445,337 + +0.6 445,337 + +1.6 445,372 + +0.1 445,372 + -2.1 445,372 + +1.2 445,372 + -1.2 445,372 + -0.1 445,372 + +0.2 445,372 + +0.9 445,373 - -0.2 445,373 - -2.5 445,373 - -0.2 445,373 - +0.9 445,373 - +0.2 445,376 + -0.5 445,376 + +0.1 445,376 + +0.4 445,376 + -0.7 445,376 + -0.5 445,376 + -0.8 445,376 + -1.8 445,376 + +0.6 445,376 + -1.7 445,376 + -1.0 445,376 + -1.3 445,376 + -0.5 445,376 + -0.5 445,376 + -0.7 445,376 + -1.3 445,376 + +0.3 445,376 + +1.0 445,376 + +0.8 445,376 + -1.0 445,376 + -0.5 445,377 - -1.7 445,377 - -1.1 445,377 - -0.1 445,377 - -0.8 445,377 - -1.8 445,377 - -1.0 445,377 - +0.5 445,377 - -0.4 445,377 - -1.4 445,377 - -0.3 445,377 - -0.8 445,377 - +0.0 445,377 - +0.9 445,396 + -0.4 445,397 - +0.6 445,490 + MPMX19_04976 0.12 -0.4 445,490 + MPMX19_04976 0.12 -0.2 445,490 + MPMX19_04976 0.12 -0.4 445,490 + MPMX19_04976 0.12 +1.6 445,490 + MPMX19_04976 0.12 -0.4 445,491 - MPMX19_04976 0.12 -0.4 445,491 - MPMX19_04976 0.12 -0.1 445,491 - MPMX19_04976 0.12 -0.8 445,784 + MPMX19_04976 0.43 -0.2 445,784 + MPMX19_04976 0.43 +0.0 445,784 + MPMX19_04976 0.43 -0.3 445,784 + MPMX19_04976 0.43 +0.5 445,784 + MPMX19_04976 0.43 -0.0 445,784 + MPMX19_04976 0.43 -1.4 445,784 + MPMX19_04976 0.43 -1.0 445,784 + MPMX19_04976 0.43 +0.9 445,785 - MPMX19_04976 0.43 +0.1 445,785 - MPMX19_04976 0.43 +2.9 445,785 - MPMX19_04976 0.43 -0.8 445,877 + MPMX19_04976 0.53 +0.4 445,877 + MPMX19_04976 0.53 -1.0 445,877 + MPMX19_04976 0.53 +0.0 445,877 + MPMX19_04976 0.53 +0.3 445,877 + MPMX19_04976 0.53 +1.1 445,878 - MPMX19_04976 0.53 -1.1 445,878 - MPMX19_04976 0.53 +0.1 445,878 - MPMX19_04976 0.53 -0.8 445,878 - MPMX19_04976 0.53 +0.2 445,878 - MPMX19_04976 0.53 +0.0 445,878 - MPMX19_04976 0.53 -0.8 445,878 - MPMX19_04976 0.53 -0.9 445,976 + MPMX19_04976 0.63 +1.3 445,976 + MPMX19_04976 0.63 -0.5 445,976 + MPMX19_04976 0.63 +0.0 445,976 + MPMX19_04976 0.63 +0.0 445,976 + MPMX19_04976 0.63 -0.1 445,976 + MPMX19_04976 0.63 -1.4 445,976 + MPMX19_04976 0.63 -2.0 445,976 + MPMX19_04976 0.63 +0.2 445,976 + MPMX19_04976 0.63 +0.8 445,976 + MPMX19_04976 0.63 +0.8 445,976 + MPMX19_04976 0.63 -0.2 445,976 + MPMX19_04976 0.63 +0.0 445,976 + MPMX19_04976 0.63 +0.2 445,976 + MPMX19_04976 0.63 +0.6 445,976 + MPMX19_04976 0.63 -0.5 445,976 + MPMX19_04976 0.63 -0.5 445,976 + MPMX19_04976 0.63 +0.4 445,977 - MPMX19_04976 0.63 +0.4 445,977 - MPMX19_04976 0.63 +0.6 445,977 - MPMX19_04976 0.63 +0.0 445,977 - MPMX19_04976 0.63 -0.0 445,977 - MPMX19_04976 0.63 -0.5 445,977 - MPMX19_04976 0.63 -1.3 445,977 - MPMX19_04976 0.63 -1.8 445,977 - MPMX19_04976 0.63 -0.6 445,977 - MPMX19_04976 0.63 -0.5 445,977 - MPMX19_04976 0.63 +0.7 445,977 - MPMX19_04976 0.63 -0.4 445,977 - MPMX19_04976 0.63 -2.5 445,977 - MPMX19_04976 0.63 -1.4 445,977 - MPMX19_04976 0.63 -0.1 446,168 + MPMX19_04976 0.83 -0.8 446,169 - MPMX19_04976 0.83 -0.6
Or see this region's nucleotide sequence