Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04912

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04911 and MPMX19_04912 are separated by 214 nucleotidesMPMX19_04912 and MPMX19_04913 are separated by 2 nucleotides MPMX19_04911: MPMX19_04911 - hypothetical protein, at 366,170 to 368,194 _04911 MPMX19_04912: MPMX19_04912 - hypothetical protein, at 368,409 to 369,512 _04912 MPMX19_04913: MPMX19_04913 - hypothetical protein, at 369,515 to 370,816 _04913 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.533 kb on + strand, within MPMX19_04911at 367.533 kb on + strand, within MPMX19_04911at 367.534 kb on - strand, within MPMX19_04911at 367.616 kb on - strand, within MPMX19_04911at 368.309 kb on - strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.327 kb on + strandat 368.328 kb on - strandat 368.337 kb on - strandat 368.364 kb on + strandat 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.306 kb on + strand, within MPMX19_04912at 369.306 kb on + strand, within MPMX19_04912at 369.307 kb on - strand, within MPMX19_04912at 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 370.096 kb on + strand, within MPMX19_04913at 370.096 kb on + strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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367,533 + MPMX19_04911 0.67 -0.2
367,533 + MPMX19_04911 0.67 -0.2
367,534 - MPMX19_04911 0.67 -0.5
367,616 - MPMX19_04911 0.71 -1.5
368,309 - +0.0
368,325 + -0.7
368,325 + -0.3
368,325 + -0.3
368,325 + -0.5
368,325 + -2.3
368,325 + -2.0
368,326 - -0.3
368,326 - +0.4
368,326 - -0.5
368,326 - -0.5
368,326 - -1.4
368,326 - -0.2
368,326 - -1.8
368,326 - -1.2
368,326 - -0.6
368,326 - +1.0
368,326 - -0.4
368,327 + +0.0
368,328 - -1.2
368,337 - +1.4
368,364 + -0.8
368,565 + MPMX19_04912 0.14 -0.7
368,565 + MPMX19_04912 0.14 -0.6
368,565 + MPMX19_04912 0.14 -1.5
368,565 + MPMX19_04912 0.14 +1.3
368,565 + MPMX19_04912 0.14 +0.0
368,565 + MPMX19_04912 0.14 +1.0
368,565 + MPMX19_04912 0.14 -1.0
368,565 + MPMX19_04912 0.14 -1.5
368,565 + MPMX19_04912 0.14 +0.7
368,565 + MPMX19_04912 0.14 -0.0
368,565 + MPMX19_04912 0.14 +0.0
368,566 - MPMX19_04912 0.14 -0.4
368,566 - MPMX19_04912 0.14 -2.1
368,566 - MPMX19_04912 0.14 -0.5
368,566 - MPMX19_04912 0.14 -1.5
368,566 - MPMX19_04912 0.14 -0.5
368,781 + MPMX19_04912 0.34 -1.3
368,781 + MPMX19_04912 0.34 -2.7
368,781 + MPMX19_04912 0.34 -1.5
368,781 + MPMX19_04912 0.34 +0.0
368,781 + MPMX19_04912 0.34 -0.1
368,782 - MPMX19_04912 0.34 +0.2
368,782 - MPMX19_04912 0.34 -0.4
368,782 - MPMX19_04912 0.34 -0.4
368,782 - MPMX19_04912 0.34 +0.1
368,782 - MPMX19_04912 0.34 -0.1
368,931 + MPMX19_04912 0.47 +0.4
368,931 + MPMX19_04912 0.47 +0.1
368,931 + MPMX19_04912 0.47 -0.3
368,932 - MPMX19_04912 0.47 -0.1
368,932 - MPMX19_04912 0.47 -1.1
369,119 + MPMX19_04912 0.64 +0.0
369,119 + MPMX19_04912 0.64 +0.6
369,119 + MPMX19_04912 0.64 +0.2
369,119 + MPMX19_04912 0.64 +0.6
369,119 + MPMX19_04912 0.64 -1.5
369,119 + MPMX19_04912 0.64 -1.0
369,119 + MPMX19_04912 0.64 -1.1
369,119 + MPMX19_04912 0.64 +0.6
369,119 + MPMX19_04912 0.64 -0.5
369,119 + MPMX19_04912 0.64 -0.1
369,119 + MPMX19_04912 0.64 -0.6
369,119 + MPMX19_04912 0.64 -1.4
369,119 + MPMX19_04912 0.64 +1.9
369,119 + MPMX19_04912 0.64 -0.5
369,119 + MPMX19_04912 0.64 -0.2
369,119 + MPMX19_04912 0.64 -1.0
369,120 - MPMX19_04912 0.64 -0.6
369,120 - MPMX19_04912 0.64 -1.0
369,120 - MPMX19_04912 0.64 -0.4
369,120 - MPMX19_04912 0.64 -0.3
369,120 - MPMX19_04912 0.64 -0.7
369,120 - MPMX19_04912 0.64 -0.2
369,120 - MPMX19_04912 0.64 +0.2
369,120 - MPMX19_04912 0.64 -0.5
369,120 - MPMX19_04912 0.64 +0.0
369,120 - MPMX19_04912 0.64 -0.4
369,120 - MPMX19_04912 0.64 +0.1
369,120 - MPMX19_04912 0.64 +0.2
369,120 - MPMX19_04912 0.64 -1.7
369,120 - MPMX19_04912 0.64 -0.7
369,120 - MPMX19_04912 0.64 +1.8
369,120 - MPMX19_04912 0.64 -0.3
369,264 + MPMX19_04912 0.77 +0.2
369,264 + MPMX19_04912 0.77 +0.0
369,264 + MPMX19_04912 0.77 +0.6
369,265 - MPMX19_04912 0.78 -0.2
369,265 - MPMX19_04912 0.78 +0.7
369,265 - MPMX19_04912 0.78 -0.1
369,265 - MPMX19_04912 0.78 +0.9
369,306 + MPMX19_04912 0.81 -1.5
369,306 + MPMX19_04912 0.81 -0.9
369,307 - MPMX19_04912 0.81 -0.7
369,435 + -0.6
369,435 + -1.8
369,435 + -0.0
369,435 + -0.1
369,435 + -0.2
369,435 + -0.7
369,435 + -1.7
369,436 - -0.5
369,436 - -1.5
369,436 - -2.0
369,436 - +0.5
369,436 - -0.5
369,436 - +1.3
370,096 + MPMX19_04913 0.45 +0.7
370,096 + MPMX19_04913 0.45 +0.3
370,097 - MPMX19_04913 0.45 +0.7
370,097 - MPMX19_04913 0.45 +0.5

Or see this region's nucleotide sequence