Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04158

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04157 and MPMX19_04158 overlap by 4 nucleotidesMPMX19_04158 and MPMX19_04159 are separated by 55 nucleotides MPMX19_04157: MPMX19_04157 - D-inositol-3-phosphate glycosyltransferase, at 471,847 to 473,235 _04157 MPMX19_04158: MPMX19_04158 - hypothetical protein, at 473,232 to 475,439 _04158 MPMX19_04159: MPMX19_04159 - D-inositol-3-phosphate glycosyltransferase, at 475,495 to 476,808 _04159 Position (kb) 473 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 472.271 kb on + strand, within MPMX19_04157at 472.272 kb on - strand, within MPMX19_04157at 472.321 kb on + strand, within MPMX19_04157at 472.321 kb on + strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.339 kb on + strand, within MPMX19_04157at 472.552 kb on + strand, within MPMX19_04157at 472.552 kb on + strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.670 kb on - strand, within MPMX19_04157at 472.780 kb on + strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.859 kb on - strand, within MPMX19_04157at 473.177 kb on - strandat 473.211 kb on + strandat 473.211 kb on + strandat 473.211 kb on + strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 474.099 kb on + strand, within MPMX19_04158at 474.099 kb on + strand, within MPMX19_04158at 474.099 kb on + strand, within MPMX19_04158at 474.100 kb on - strand, within MPMX19_04158at 474.811 kb on - strand, within MPMX19_04158at 474.811 kb on - strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.102 kb on - strand, within MPMX19_04158at 475.102 kb on - strand, within MPMX19_04158at 475.237 kb on - strandat 475.295 kb on + strandat 475.295 kb on + strandat 475.296 kb on - strandat 475.296 kb on - strandat 475.437 kb on + strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.709 kb on - strand, within MPMX19_04159at 475.709 kb on - strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.104 kb on + strand, within MPMX19_04159at 476.105 kb on - strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.357 kb on - strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.411 kb on - strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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472,271 + MPMX19_04157 0.31 -0.6
472,272 - MPMX19_04157 0.31 +0.6
472,321 + MPMX19_04157 0.34 +0.2
472,321 + MPMX19_04157 0.34 -0.4
472,322 - MPMX19_04157 0.34 -0.8
472,322 - MPMX19_04157 0.34 -1.2
472,322 - MPMX19_04157 0.34 -1.5
472,322 - MPMX19_04157 0.34 -1.8
472,336 + MPMX19_04157 0.35 +0.9
472,336 + MPMX19_04157 0.35 +0.5
472,336 + MPMX19_04157 0.35 -0.7
472,336 + MPMX19_04157 0.35 -0.0
472,336 + MPMX19_04157 0.35 -1.2
472,336 + MPMX19_04157 0.35 -0.2
472,336 + MPMX19_04157 0.35 -0.5
472,336 + MPMX19_04157 0.35 -0.8
472,336 + MPMX19_04157 0.35 -1.4
472,337 - MPMX19_04157 0.35 +0.4
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 -1.5
472,337 - MPMX19_04157 0.35 -0.2
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 +0.1
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 -0.1
472,337 - MPMX19_04157 0.35 -2.3
472,337 - MPMX19_04157 0.35 -0.4
472,337 - MPMX19_04157 0.35 -0.2
472,337 - MPMX19_04157 0.35 +0.6
472,337 - MPMX19_04157 0.35 -2.7
472,337 - MPMX19_04157 0.35 -2.1
472,339 + MPMX19_04157 0.35 -0.0
472,552 + MPMX19_04157 0.51 -0.4
472,552 + MPMX19_04157 0.51 -0.1
472,553 - MPMX19_04157 0.51 -0.3
472,553 - MPMX19_04157 0.51 +0.2
472,553 - MPMX19_04157 0.51 -0.4
472,553 - MPMX19_04157 0.51 -1.2
472,553 - MPMX19_04157 0.51 +0.1
472,553 - MPMX19_04157 0.51 -1.0
472,669 + MPMX19_04157 0.59 -0.4
472,669 + MPMX19_04157 0.59 +0.6
472,669 + MPMX19_04157 0.59 -1.4
472,670 - MPMX19_04157 0.59 +1.6
472,780 + MPMX19_04157 0.67 -0.2
472,781 - MPMX19_04157 0.67 +0.8
472,781 - MPMX19_04157 0.67 +1.0
472,781 - MPMX19_04157 0.67 -0.8
472,859 - MPMX19_04157 0.73 -0.8
473,177 - -0.8
473,211 + -1.0
473,211 + -0.6
473,211 + +0.8
473,212 - -0.0
473,212 - -0.8
473,212 - -1.0
473,212 - -1.6
473,212 - +0.3
473,212 - +1.4
473,212 - -1.3
474,099 + MPMX19_04158 0.39 +0.5
474,099 + MPMX19_04158 0.39 -0.2
474,099 + MPMX19_04158 0.39 -0.8
474,100 - MPMX19_04158 0.39 -0.1
474,811 - MPMX19_04158 0.72 -0.3
474,811 - MPMX19_04158 0.72 -0.9
475,035 + MPMX19_04158 0.82 -0.0
475,035 + MPMX19_04158 0.82 -0.3
475,035 + MPMX19_04158 0.82 -2.6
475,035 + MPMX19_04158 0.82 +0.8
475,035 + MPMX19_04158 0.82 -0.7
475,035 + MPMX19_04158 0.82 +1.6
475,035 + MPMX19_04158 0.82 +0.4
475,035 + MPMX19_04158 0.82 -0.4
475,036 - MPMX19_04158 0.82 -0.0
475,036 - MPMX19_04158 0.82 -0.3
475,036 - MPMX19_04158 0.82 -0.2
475,036 - MPMX19_04158 0.82 -1.1
475,036 - MPMX19_04158 0.82 +0.8
475,036 - MPMX19_04158 0.82 -0.4
475,036 - MPMX19_04158 0.82 -0.3
475,036 - MPMX19_04158 0.82 -0.2
475,036 - MPMX19_04158 0.82 +0.6
475,036 - MPMX19_04158 0.82 +0.4
475,101 + MPMX19_04158 0.85 +0.2
475,101 + MPMX19_04158 0.85 -1.0
475,101 + MPMX19_04158 0.85 -0.2
475,101 + MPMX19_04158 0.85 +1.6
475,102 - MPMX19_04158 0.85 +1.2
475,102 - MPMX19_04158 0.85 +0.1
475,237 - -0.3
475,295 + -0.8
475,295 + +0.3
475,296 - +0.6
475,296 - -1.7
475,437 + -0.4
475,438 - +0.2
475,438 - +0.2
475,438 - -0.2
475,438 - -0.4
475,573 + +0.3
475,573 + -0.4
475,573 + +0.2
475,573 + -0.4
475,573 + -0.4
475,573 + -0.2
475,574 - -1.6
475,574 - +1.3
475,574 - -0.4
475,574 - -0.0
475,574 - +0.3
475,574 - -0.0
475,574 - +0.6
475,574 - +0.4
475,574 - -1.5
475,574 - +0.2
475,621 + -0.4
475,621 + +0.5
475,621 + -0.2
475,621 + -0.7
475,621 + +0.6
475,622 - -0.0
475,622 - -0.8
475,622 - -0.9
475,622 - -0.6
475,622 - -0.1
475,622 - +0.7
475,622 - +0.3
475,622 - -0.7
475,622 - -0.9
475,622 - -0.4
475,705 + MPMX19_04159 0.16 -0.5
475,705 + MPMX19_04159 0.16 -2.0
475,705 + MPMX19_04159 0.16 -0.7
475,705 + MPMX19_04159 0.16 -0.3
475,705 + MPMX19_04159 0.16 +0.2
475,705 + MPMX19_04159 0.16 -0.4
475,705 + MPMX19_04159 0.16 +0.6
475,706 - MPMX19_04159 0.16 -1.3
475,706 - MPMX19_04159 0.16 +0.2
475,706 - MPMX19_04159 0.16 +0.6
475,706 - MPMX19_04159 0.16 -0.3
475,706 - MPMX19_04159 0.16 +0.4
475,708 + MPMX19_04159 0.16 -0.7
475,708 + MPMX19_04159 0.16 +0.0
475,708 + MPMX19_04159 0.16 +0.6
475,708 + MPMX19_04159 0.16 +0.7
475,708 + MPMX19_04159 0.16 -1.3
475,709 - MPMX19_04159 0.16 +0.2
475,709 - MPMX19_04159 0.16 +0.8
475,720 + MPMX19_04159 0.17 +0.1
475,720 + MPMX19_04159 0.17 -0.2
475,720 + MPMX19_04159 0.17 -0.4
475,720 + MPMX19_04159 0.17 -1.2
475,720 + MPMX19_04159 0.17 -0.0
475,720 + MPMX19_04159 0.17 +0.7
475,721 - MPMX19_04159 0.17 -0.1
475,721 - MPMX19_04159 0.17 -1.4
475,721 - MPMX19_04159 0.17 +0.2
475,780 + MPMX19_04159 0.22 +1.2
475,780 + MPMX19_04159 0.22 -1.3
475,780 + MPMX19_04159 0.22 -1.0
475,781 - MPMX19_04159 0.22 -0.5
475,781 - MPMX19_04159 0.22 -1.9
475,781 - MPMX19_04159 0.22 -0.7
475,781 - MPMX19_04159 0.22 -1.6
475,781 - MPMX19_04159 0.22 +1.0
475,781 - MPMX19_04159 0.22 -0.3
475,903 + MPMX19_04159 0.31 -0.3
475,903 + MPMX19_04159 0.31 +1.1
475,903 + MPMX19_04159 0.31 -0.6
475,903 + MPMX19_04159 0.31 -1.0
475,903 + MPMX19_04159 0.31 -0.0
475,903 + MPMX19_04159 0.31 -0.6
475,903 + MPMX19_04159 0.31 +1.0
475,903 + MPMX19_04159 0.31 -0.7
475,903 + MPMX19_04159 0.31 -1.4
475,903 + MPMX19_04159 0.31 -0.9
475,903 + MPMX19_04159 0.31 +0.2
475,903 + MPMX19_04159 0.31 +0.2
475,903 + MPMX19_04159 0.31 -0.2
475,903 + MPMX19_04159 0.31 +1.6
475,903 + MPMX19_04159 0.31 -1.6
475,904 - MPMX19_04159 0.31 +0.6
475,904 - MPMX19_04159 0.31 -0.8
475,904 - MPMX19_04159 0.31 -0.2
475,904 - MPMX19_04159 0.31 -0.9
475,904 - MPMX19_04159 0.31 -0.0
475,904 - MPMX19_04159 0.31 +0.3
475,904 - MPMX19_04159 0.31 +0.6
475,904 - MPMX19_04159 0.31 +1.2
475,904 - MPMX19_04159 0.31 -2.4
475,904 - MPMX19_04159 0.31 +0.1
475,904 - MPMX19_04159 0.31 -0.0
475,904 - MPMX19_04159 0.31 +0.2
475,904 - MPMX19_04159 0.31 +1.8
475,904 - MPMX19_04159 0.31 -0.0
475,904 - MPMX19_04159 0.31 -0.5
475,904 - MPMX19_04159 0.31 -1.2
475,904 - MPMX19_04159 0.31 +0.7
476,071 + MPMX19_04159 0.44 +0.2
476,071 + MPMX19_04159 0.44 -0.8
476,071 + MPMX19_04159 0.44 -1.8
476,071 + MPMX19_04159 0.44 -0.6
476,071 + MPMX19_04159 0.44 +1.0
476,071 + MPMX19_04159 0.44 -0.2
476,072 - MPMX19_04159 0.44 +2.4
476,072 - MPMX19_04159 0.44 -0.2
476,072 - MPMX19_04159 0.44 -0.2
476,072 - MPMX19_04159 0.44 +0.3
476,072 - MPMX19_04159 0.44 +0.5
476,072 - MPMX19_04159 0.44 -0.7
476,104 + MPMX19_04159 0.46 -1.4
476,105 - MPMX19_04159 0.46 +0.3
476,356 + MPMX19_04159 0.66 -0.6
476,356 + MPMX19_04159 0.66 -2.0
476,356 + MPMX19_04159 0.66 -0.9
476,357 - MPMX19_04159 0.66 -0.9
476,410 + MPMX19_04159 0.70 -2.5
476,410 + MPMX19_04159 0.70 +0.2
476,411 - MPMX19_04159 0.70 -0.6
476,419 + MPMX19_04159 0.70 -0.1
476,419 + MPMX19_04159 0.70 -0.4
476,419 + MPMX19_04159 0.70 -0.0
476,419 + MPMX19_04159 0.70 -0.6
476,420 - MPMX19_04159 0.70 -0.3
476,420 - MPMX19_04159 0.70 +0.2

Or see this region's nucleotide sequence