Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04101 and MPMX19_04102 are separated by 174 nucleotides MPMX19_04102 and MPMX19_04103 are separated by 80 nucleotides MPMX19_04103 and MPMX19_04104 are separated by 198 nucleotides
MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565
_04101
MPMX19_04102: MPMX19_04102 - hypothetical protein, at 408,740 to 409,972
_04102
MPMX19_04103: MPMX19_04103 - hypothetical protein, at 410,053 to 410,313
_04103
MPMX19_04104: MPMX19_04104 - hypothetical protein, at 410,512 to 411,090
_04104
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.997 kb on - strand, within MPMX19_04101 at 407.997 kb on - strand, within MPMX19_04101 at 408.209 kb on + strand, within MPMX19_04101 at 408.209 kb on + strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.587 kb on + strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.621 kb on - strand at 408.621 kb on - strand at 408.621 kb on - strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.869 kb on + strand, within MPMX19_04102 at 408.869 kb on + strand, within MPMX19_04102 at 408.870 kb on - strand, within MPMX19_04102 at 408.870 kb on - strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.012 kb on - strand, within MPMX19_04102 at 409.012 kb on - strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.793 kb on + strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.825 kb on - strand, within MPMX19_04102 at 409.825 kb on - strand, within MPMX19_04102 at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.971 kb on - strand at 410.367 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.493 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.581 kb on + strand, within MPMX19_04104 at 410.581 kb on + strand, within MPMX19_04104 at 410.582 kb on - strand, within MPMX19_04104 at 410.582 kb on - strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.692 kb on + strand, within MPMX19_04104 at 410.767 kb on + strand, within MPMX19_04104 at 410.767 kb on + strand, within MPMX19_04104
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 407,997 - MPMX19_04101 0.56 -1.6 407,997 - MPMX19_04101 0.56 -0.5 408,209 + MPMX19_04101 0.73 -0.0 408,209 + MPMX19_04101 0.73 -0.1 408,210 - MPMX19_04101 0.73 -0.0 408,210 - MPMX19_04101 0.73 -0.3 408,210 - MPMX19_04101 0.73 -0.3 408,210 - MPMX19_04101 0.73 -0.8 408,587 + -0.0 408,588 - -0.5 408,588 - +0.9 408,588 - +0.2 408,595 + -0.4 408,595 + -1.2 408,595 + -0.0 408,595 + -0.3 408,596 - -0.4 408,596 - +1.2 408,596 - -1.0 408,596 - -0.6 408,620 + -1.8 408,620 + +0.6 408,620 + +0.2 408,620 + -0.5 408,620 + -1.2 408,620 + -0.9 408,621 - -0.6 408,621 - -0.6 408,621 - -1.6 408,649 + -0.8 408,649 + -0.8 408,649 + -0.6 408,649 + -0.4 408,649 + -0.5 408,649 + -2.0 408,650 - -0.8 408,650 - +0.1 408,650 - -0.4 408,650 - +0.2 408,650 - -0.8 408,650 - -1.3 408,650 - -1.4 408,869 + MPMX19_04102 0.10 -2.5 408,869 + MPMX19_04102 0.10 -0.2 408,870 - MPMX19_04102 0.11 -0.6 408,870 - MPMX19_04102 0.11 +0.8 409,011 + MPMX19_04102 0.22 -0.2 409,011 + MPMX19_04102 0.22 -0.4 409,011 + MPMX19_04102 0.22 +0.3 409,011 + MPMX19_04102 0.22 +0.2 409,012 - MPMX19_04102 0.22 -0.2 409,012 - MPMX19_04102 0.22 +0.3 409,091 + MPMX19_04102 0.28 +0.7 409,091 + MPMX19_04102 0.28 -0.7 409,091 + MPMX19_04102 0.28 -0.3 409,091 + MPMX19_04102 0.28 -0.0 409,457 + MPMX19_04102 0.58 -3.1 409,457 + MPMX19_04102 0.58 -0.3 409,457 + MPMX19_04102 0.58 -1.2 409,457 + MPMX19_04102 0.58 -0.5 409,457 + MPMX19_04102 0.58 -1.6 409,457 + MPMX19_04102 0.58 -0.9 409,457 + MPMX19_04102 0.58 +0.2 409,457 + MPMX19_04102 0.58 +0.1 409,457 + MPMX19_04102 0.58 -0.2 409,458 - MPMX19_04102 0.58 -0.7 409,458 - MPMX19_04102 0.58 -0.4 409,458 - MPMX19_04102 0.58 +0.2 409,458 - MPMX19_04102 0.58 -0.4 409,458 - MPMX19_04102 0.58 -2.2 409,458 - MPMX19_04102 0.58 +0.2 409,458 - MPMX19_04102 0.58 -1.5 409,458 - MPMX19_04102 0.58 +1.0 409,611 + MPMX19_04102 0.71 +0.4 409,611 + MPMX19_04102 0.71 -0.7 409,611 + MPMX19_04102 0.71 -2.5 409,611 + MPMX19_04102 0.71 -0.6 409,612 - MPMX19_04102 0.71 -0.6 409,612 - MPMX19_04102 0.71 -0.9 409,612 - MPMX19_04102 0.71 -0.8 409,612 - MPMX19_04102 0.71 -0.2 409,715 + MPMX19_04102 0.79 -0.8 409,715 + MPMX19_04102 0.79 -0.0 409,715 + MPMX19_04102 0.79 -1.0 409,715 + MPMX19_04102 0.79 -0.4 409,716 - MPMX19_04102 0.79 -1.8 409,716 - MPMX19_04102 0.79 -0.9 409,716 - MPMX19_04102 0.79 -1.0 409,716 - MPMX19_04102 0.79 +0.6 409,716 - MPMX19_04102 0.79 +0.3 409,716 - MPMX19_04102 0.79 -1.2 409,716 - MPMX19_04102 0.79 -0.1 409,716 - MPMX19_04102 0.79 -0.3 409,716 - MPMX19_04102 0.79 -0.8 409,716 - MPMX19_04102 0.79 -1.2 409,716 - MPMX19_04102 0.79 -1.5 409,793 + MPMX19_04102 0.85 +0.6 409,794 - MPMX19_04102 0.85 -0.9 409,794 - MPMX19_04102 0.85 -0.6 409,794 - MPMX19_04102 0.85 -0.3 409,794 - MPMX19_04102 0.85 -1.5 409,794 - MPMX19_04102 0.85 -0.2 409,824 + MPMX19_04102 0.88 -1.2 409,824 + MPMX19_04102 0.88 -1.0 409,824 + MPMX19_04102 0.88 -2.0 409,824 + MPMX19_04102 0.88 -1.0 409,824 + MPMX19_04102 0.88 +1.6 409,825 - MPMX19_04102 0.88 -0.0 409,825 - MPMX19_04102 0.88 +0.1 409,907 + -0.8 409,907 + -0.7 409,907 + +0.2 409,907 + -2.8 409,907 + -0.2 409,908 - +1.3 409,908 - -0.8 409,908 - -1.8 409,908 - +1.0 409,971 - -0.0 410,367 + -2.4 410,423 + -1.5 410,423 + -1.0 410,423 + -1.4 410,423 + -0.4 410,423 + -0.8 410,423 + +0.6 410,423 + -0.3 410,423 + -0.7 410,423 + -0.3 410,423 + +2.2 410,423 + -0.4 410,423 + -1.8 410,423 + -0.8 410,423 + +1.4 410,423 + -0.4 410,423 + +0.4 410,423 + +0.1 410,423 + -1.8 410,423 + -0.5 410,423 + -0.2 410,423 + -1.4 410,423 + -0.4 410,423 + -0.1 410,423 + +0.2 410,423 + -0.2 410,423 + -1.2 410,423 + -0.5 410,424 - -1.1 410,424 - +0.5 410,424 - +0.8 410,424 - -0.8 410,424 - +0.3 410,424 - -0.3 410,424 - -2.1 410,424 - +0.2 410,424 - -1.0 410,424 - -1.2 410,424 - -0.4 410,424 - -1.3 410,424 - -1.0 410,424 - +0.2 410,424 - -2.1 410,424 - -0.6 410,424 - +0.6 410,424 - +0.2 410,424 - -0.3 410,424 - -0.7 410,424 - -1.8 410,424 - -0.4 410,493 + -0.4 410,511 + +0.2 410,511 + -1.4 410,511 + +0.0 410,511 + +0.7 410,511 + -0.9 410,511 + -1.7 410,511 + +0.5 410,511 + -0.9 410,511 + -0.2 410,511 + -0.0 410,511 + -0.5 410,512 - +1.6 410,512 - -2.2 410,512 - +0.2 410,512 - -0.5 410,512 - -0.7 410,512 - -0.4 410,512 - +0.8 410,512 - -1.3 410,512 - +1.0 410,581 + MPMX19_04104 0.12 -0.3 410,581 + MPMX19_04104 0.12 -0.8 410,582 - MPMX19_04104 0.12 -0.8 410,582 - MPMX19_04104 0.12 +1.3 410,596 + MPMX19_04104 0.15 -0.9 410,596 + MPMX19_04104 0.15 -1.0 410,596 + MPMX19_04104 0.15 -0.5 410,596 + MPMX19_04104 0.15 +0.5 410,596 + MPMX19_04104 0.15 -1.0 410,639 + MPMX19_04104 0.22 -1.8 410,639 + MPMX19_04104 0.22 -0.5 410,639 + MPMX19_04104 0.22 -1.4 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 +1.0 410,639 + MPMX19_04104 0.22 -0.9 410,639 + MPMX19_04104 0.22 -0.9 410,639 + MPMX19_04104 0.22 -0.8 410,639 + MPMX19_04104 0.22 -0.8 410,639 + MPMX19_04104 0.22 -1.5 410,639 + MPMX19_04104 0.22 -0.4 410,639 + MPMX19_04104 0.22 -1.0 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 -0.1 410,639 + MPMX19_04104 0.22 -1.2 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 -0.0 410,639 + MPMX19_04104 0.22 -0.5 410,639 + MPMX19_04104 0.22 -0.4 410,639 + MPMX19_04104 0.22 +0.4 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 -0.3 410,639 + MPMX19_04104 0.22 -0.4 410,692 + MPMX19_04104 0.31 -1.2 410,767 + MPMX19_04104 0.44 -2.1 410,767 + MPMX19_04104 0.44 -0.4
Or see this region's nucleotide sequence