Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03899 and MPMX19_03900 are separated by 314 nucleotides MPMX19_03900 and MPMX19_03901 are separated by 131 nucleotides
MPMX19_03899: MPMX19_03899 - Ferrichrome receptor FcuA, at 172,429 to 174,945
_03899
MPMX19_03900: MPMX19_03900 - Hca operon transcriptional activator HcaR, at 175,260 to 176,150
_03900
MPMX19_03901: MPMX19_03901 - Glyoxylate/hydroxypyruvate reductase B, at 176,282 to 177,295
_03901
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.408 kb on - strand, within MPMX19_03899 at 174.555 kb on - strand, within MPMX19_03899 at 174.937 kb on + strand at 174.938 kb on - strand at 174.938 kb on - strand at 174.938 kb on - strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.948 kb on + strand at 174.949 kb on - strand at 175.031 kb on + strand at 175.032 kb on - strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand at 175.035 kb on + strand at 175.035 kb on + strand at 175.035 kb on + strand at 175.036 kb on - strand at 175.142 kb on - strand at 175.226 kb on + strand at 175.226 kb on + strand at 175.227 kb on - strand at 175.227 kb on - strand at 175.227 kb on - strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 176.026 kb on - strand, within MPMX19_03900 at 176.073 kb on + strand at 176.235 kb on + strand at 176.666 kb on + strand, within MPMX19_03901 at 176.667 kb on - strand, within MPMX19_03901 at 176.667 kb on - strand, within MPMX19_03901 at 176.970 kb on + strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.006 kb on - strand, within MPMX19_03901 at 177.057 kb on - strand, within MPMX19_03901 at 177.057 kb on - strand, within MPMX19_03901 at 177.063 kb on - strand, within MPMX19_03901
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 174,320 + MPMX19_03899 0.75 -0.4 174,320 + MPMX19_03899 0.75 +0.1 174,320 + MPMX19_03899 0.75 -0.3 174,320 + MPMX19_03899 0.75 +0.3 174,320 + MPMX19_03899 0.75 +0.2 174,320 + MPMX19_03899 0.75 -0.2 174,320 + MPMX19_03899 0.75 -0.4 174,320 + MPMX19_03899 0.75 +0.3 174,320 + MPMX19_03899 0.75 -2.2 174,321 - MPMX19_03899 0.75 -0.3 174,321 - MPMX19_03899 0.75 +0.5 174,321 - MPMX19_03899 0.75 -0.8 174,321 - MPMX19_03899 0.75 -1.6 174,321 - MPMX19_03899 0.75 -0.4 174,321 - MPMX19_03899 0.75 -0.0 174,321 - MPMX19_03899 0.75 +0.2 174,321 - MPMX19_03899 0.75 -0.0 174,321 - MPMX19_03899 0.75 -1.8 174,321 - MPMX19_03899 0.75 -0.7 174,321 - MPMX19_03899 0.75 +0.6 174,321 - MPMX19_03899 0.75 -1.6 174,407 + MPMX19_03899 0.79 -0.1 174,407 + MPMX19_03899 0.79 +0.2 174,407 + MPMX19_03899 0.79 +0.2 174,407 + MPMX19_03899 0.79 -0.3 174,408 - MPMX19_03899 0.79 +0.2 174,555 - MPMX19_03899 0.84 -1.2 174,937 + +0.2 174,938 - -1.6 174,938 - +0.6 174,938 - -1.8 174,945 + +0.6 174,945 + -1.2 174,945 + +0.3 174,945 + +0.0 174,945 + -1.9 174,945 + +0.2 174,945 + -0.7 174,945 + +0.1 174,945 + -1.0 174,945 + -1.0 174,946 - -0.4 174,946 - -1.7 174,946 - -1.6 174,946 - +0.4 174,946 - -0.8 174,946 - -0.0 174,946 - -0.0 174,946 - -0.8 174,946 - -1.5 174,946 - -1.8 174,948 + +0.2 174,949 - -0.2 175,031 + -0.3 175,032 - +0.2 175,033 + -0.2 175,033 + -0.2 175,034 - -0.8 175,035 + -0.3 175,035 + -0.9 175,035 + +0.4 175,036 - -0.4 175,142 - +0.6 175,226 + -0.3 175,226 + +0.2 175,227 - +0.3 175,227 - +0.7 175,227 - +0.2 175,244 + +0.7 175,244 + -1.8 175,244 + -1.0 175,244 + -1.8 175,244 + -1.9 175,244 + -0.8 175,244 + -1.4 175,244 + -0.2 175,244 + +0.3 175,244 + -0.4 175,244 + +1.2 175,244 + +0.7 175,244 + +0.3 175,244 + -0.1 175,244 + -0.2 175,244 + -1.6 175,244 + +0.6 175,245 - -0.1 175,245 - -0.6 175,245 - -0.7 175,245 - +1.2 175,245 - -0.4 175,245 - -0.8 175,245 - +0.2 175,245 - +0.5 175,245 - -0.9 175,245 - +0.3 175,245 - -2.4 175,245 - +0.9 175,248 + -2.5 175,248 + -0.2 175,248 + -2.5 175,248 + -0.5 175,248 + +0.4 175,248 + +0.7 175,248 + -0.1 175,249 - -0.3 175,249 - -0.4 175,249 - +0.6 175,249 - +0.1 175,249 - -0.2 175,249 - -1.6 175,249 - -0.0 175,249 - +0.4 175,249 - -0.1 175,566 + MPMX19_03900 0.34 -2.5 175,566 + MPMX19_03900 0.34 -0.2 175,566 + MPMX19_03900 0.34 +0.2 175,566 + MPMX19_03900 0.34 -0.4 175,566 + MPMX19_03900 0.34 +0.6 175,566 + MPMX19_03900 0.34 -0.4 175,566 + MPMX19_03900 0.34 +0.6 175,566 + MPMX19_03900 0.34 +0.2 175,566 + MPMX19_03900 0.34 -0.8 175,566 + MPMX19_03900 0.34 -0.0 175,567 - MPMX19_03900 0.34 -0.0 175,567 - MPMX19_03900 0.34 +0.4 175,567 - MPMX19_03900 0.34 +0.4 175,567 - MPMX19_03900 0.34 -2.0 175,567 - MPMX19_03900 0.34 -0.2 175,866 + MPMX19_03900 0.68 +0.2 175,866 + MPMX19_03900 0.68 +0.8 175,866 + MPMX19_03900 0.68 -0.2 175,866 + MPMX19_03900 0.68 -0.4 175,866 + MPMX19_03900 0.68 +1.6 176,026 - MPMX19_03900 0.86 +0.8 176,073 + -1.1 176,235 + +1.2 176,666 + MPMX19_03901 0.38 -0.5 176,667 - MPMX19_03901 0.38 +0.4 176,667 - MPMX19_03901 0.38 -0.4 176,970 + MPMX19_03901 0.68 -0.9 176,971 - MPMX19_03901 0.68 -0.3 176,971 - MPMX19_03901 0.68 +0.7 176,971 - MPMX19_03901 0.68 +0.9 176,971 - MPMX19_03901 0.68 +0.7 176,971 - MPMX19_03901 0.68 -0.0 176,971 - MPMX19_03901 0.68 -0.6 177,005 + MPMX19_03901 0.71 -0.6 177,005 + MPMX19_03901 0.71 -0.0 177,005 + MPMX19_03901 0.71 -1.0 177,006 - MPMX19_03901 0.71 -0.1 177,057 - MPMX19_03901 0.76 -2.1 177,057 - MPMX19_03901 0.76 -0.2 177,063 - MPMX19_03901 0.77 +1.1
Or see this region's nucleotide sequence